RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 ZNF316A6NFI3 1004 aaPredicted RBP9.81□□□□□ -0.84
SMAD4-208ENST00000589706 DDRGK1Q96HY6 314 aa9.81□□□□□ -0.84
SMAD4-208ENST00000589706 ARHGEF11O15085 1522 aa9.81□□□□□ -0.84
SMAD4-208ENST00000589706 ZMYND15Q9H091 742 aa9.8□□□□□ -0.84
SMAD4-208ENST00000589706 SMARCA4P51532 1647 aa9.8□□□□□ -0.84
SMAD4-208ENST00000589706 EVI5O60447 810 aa9.79□□□□□ -0.84
SMAD4-208ENST00000589706 FECHP22830 423 aa9.79□□□□□ -0.84
SMAD4-208ENST00000589706 PARP9Q8IXQ6 854 aa9.79□□□□□ -0.84
SMAD4-208ENST00000589706 PLEKHG3A1L390 1219 aa9.78□□□□□ -0.84
SMAD4-208ENST00000589706 CADPSQ9ULU8 1353 aa9.77□□□□□ -0.84
SMAD4-208ENST00000589706 PRIM1P49642 420 aaKnown RBP9.77□□□□□ -0.85
SMAD4-208ENST00000589706 SEC24BO95487 1268 aa9.76□□□□□ -0.85
SMAD4-208ENST00000589706 PTGDRQ13258 359 aa9.75□□□□□ -0.85
SMAD4-208ENST00000589706 TTLL12Q14166 644 aaPredicted RBP9.74□□□□□ -0.85
SMAD4-208ENST00000589706 PTCD2Q8WV60 388 aaKnown RBP9.74□□□□□ -0.85
SMAD4-208ENST00000589706 RSPH6AQ9H0K4 717 aa9.74□□□□□ -0.85
SMAD4-208ENST00000589706 COLQQ9Y215 455 aaPredicted RBP9.74□□□□□ -0.85
SMAD4-208ENST00000589706 ANO8Q9HCE9 1232 aaPredicted RBP9.71□□□□□ -0.86
SMAD4-208ENST00000589706 GOPCQ9HD26 462 aa9.7□□□□□ -0.86
SMAD4-208ENST00000589706 CEP164Q9UPV0 1460 aa9.7□□□□□ -0.86
SMAD4-208ENST00000589706 PEG3Q9GZU2 1588 aa9.7□□□□□ -0.86
SMAD4-208ENST00000589706 GABBR2O75899 941 aa9.68□□□□□ -0.86
SMAD4-208ENST00000589706 SLC34A2O95436 690 aa9.68□□□□□ -0.86
SMAD4-208ENST00000589706 GIGYF2Q6Y7W6 1299 aaKnown RBP9.68□□□□□ -0.86
SMAD4-208ENST00000589706 SLC39A7Q92504 469 aa9.68□□□□□ -0.86
SMAD4-208ENST00000589706 DCBLD2Q96PD2 775 aa9.68□□□□□ -0.86
SMAD4-208ENST00000589706 EPAS1Q99814 870 aa9.68□□□□□ -0.86
SMAD4-208ENST00000589706 ARAP1Q96P48 1450 aa9.67□□□□□ -0.86
SMAD4-208ENST00000589706 PHF14O94880 888 aa9.67□□□□□ -0.86
SMAD4-208ENST00000589706 EN1Q05925 392 aaPredicted RBP9.67□□□□□ -0.86
SMAD4-208ENST00000589706 C3orf67Q6ZVT6 689 aa9.67□□□□□ -0.86
SMAD4-208ENST00000589706 POTEFA5A3E0 1075 aa9.66□□□□□ -0.86
SMAD4-208ENST00000589706 MS4A1P11836 297 aa9.66□□□□□ -0.86
SMAD4-208ENST00000589706 FLIIQ13045 1269 aa9.66□□□□□ -0.86
SMAD4-208ENST00000589706 REPIN1Q9BWE0 567 aaKnown RBP9.66□□□□□ -0.86
SMAD4-208ENST00000589706 CDHR5Q9HBB8 845 aa9.66□□□□□ -0.86
SMAD4-208ENST00000589706 NPDC1Q9NQX5 325 aaPredicted RBP9.66□□□□□ -0.86
SMAD4-208ENST00000589706 FANCD2Q9BXW9 1451 aa9.65□□□□□ -0.87
SMAD4-208ENST00000589706 TTBK1Q5TCY1 1321 aaPredicted RBP9.64□□□□□ -0.87
SMAD4-208ENST00000589706 MAP3K7O43318 606 aa9.64□□□□□ -0.87
SMAD4-208ENST00000589706 C7P10643 843 aa9.64□□□□□ -0.87
SMAD4-208ENST00000589706 PCMTD1Q96MG8 357 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-208ENST00000589706 TMUB1Q9BVT8 246 aa9.63□□□□□ -0.87
SMAD4-208ENST00000589706 CLCN1P35523 988 aa9.62□□□□□ -0.87
SMAD4-208ENST00000589706 RBM33Q96EV2 1170 aaKnown RBP9.62□□□□□ -0.87
SMAD4-208ENST00000589706 SLAIN1Q8ND83 568 aa9.61□□□□□ -0.87
SMAD4-208ENST00000589706 PCDHGA10Q9Y5H3 936 aa9.61□□□□□ -0.87
SMAD4-208ENST00000589706 URB2Q14146 1524 aaKnown RBP9.61□□□□□ -0.87
SMAD4-208ENST00000589706 TYW1BQ6NUM6 668 aa9.6□□□□□ -0.87
SMAD4-208ENST00000589706 GPCPD1Q9NPB8 672 aa9.6□□□□□ -0.87
SMAD4-208ENST00000589706 METRNQ9UJH8 293 aa9.6□□□□□ -0.87
SMAD4-208ENST00000589706 UBTFP17480 764 aaKnown RBP9.59□□□□□ -0.87
SMAD4-208ENST00000589706 MDM2Q00987 491 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-208ENST00000589706 TSR1Q2NL82 804 aaKnown RBP9.59□□□□□ -0.87
SMAD4-208ENST00000589706 ZNF608Q9ULD9 1512 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-208ENST00000589706 ONECUT3O60422 494 aaPredicted RBP9.58□□□□□ -0.88
SMAD4-208ENST00000589706 SH3D19Q5HYK7 790 aa9.58□□□□□ -0.88
SMAD4-208ENST00000589706 PHOX2BQ99453 314 aa9.58□□□□□ -0.88
SMAD4-208ENST00000589706 PCDHGA4Q9Y5G9 962 aa9.58□□□□□ -0.88
SMAD4-208ENST00000589706 MROH2BQ7Z745 1585 aa9.58□□□□□ -0.88
SMAD4-208ENST00000589706 SSTR3P32745 418 aaPredicted RBP9.57□□□□□ -0.88
SMAD4-208ENST00000589706 FBXW7Q969H0 707 aa9.57□□□□□ -0.88
SMAD4-208ENST00000589706 RSF1Q96T23 1441 aaPredicted RBP9.56□□□□□ -0.88
SMAD4-208ENST00000589706 C1orf115Q9H7X2 142 aa9.55□□□□□ -0.88
SMAD4-208ENST00000589706 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.55□□□□□ -0.88
SMAD4-208ENST00000589706 OATP04181 439 aa9.54□□□□□ -0.88
SMAD4-208ENST00000589706 SKIV2LQ15477 1246 aaKnown RBP9.54□□□□□ -0.88
SMAD4-208ENST00000589706 JPH4Q96JJ6 628 aa9.54□□□□□ -0.88
SMAD4-208ENST00000589706 ARID3AQ99856 593 aa9.54□□□□□ -0.88
SMAD4-208ENST00000589706 CERKQ8TCT0 537 aa9.53□□□□□ -0.88
SMAD4-208ENST00000589706 BEGAINQ9BUH8 593 aa9.53□□□□□ -0.88
SMAD4-208ENST00000589706 CFTRP13569 1480 aa9.53□□□□□ -0.88
SMAD4-208ENST00000589706 IFT140Q96RY7 1462 aa9.53□□□□□ -0.88
SMAD4-208ENST00000589706 KDM4FA0A1W2PPD8 638 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 A6NJR5 290 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 ARID3CA6NKF2 412 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 APBB1O00213 710 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 CHD1O14646 1710 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 FAM161AQ3B820 660 aa9.52□□□□□ -0.89
SMAD4-208ENST00000589706 METTL3Q86U44 580 aaKnown RBP9.52□□□□□ -0.89
SMAD4-208ENST00000589706 FOSBP53539 338 aa9.51□□□□□ -0.89
SMAD4-208ENST00000589706 PADI6Q6TGC4 694 aa9.51□□□□□ -0.89
SMAD4-208ENST00000589706 FAM217BQ9NTX9 383 aaPredicted RBP9.51□□□□□ -0.89
SMAD4-208ENST00000589706 C6orf132Q5T0Z8 1188 aa9.5□□□□□ -0.89
SMAD4-208ENST00000589706 CLUAP1Q96AJ1 413 aa9.5□□□□□ -0.89
SMAD4-208ENST00000589706 ADGRG1Q9Y653 693 aa9.5□□□□□ -0.89
SMAD4-208ENST00000589706 POTEIP0CG38 1075 aa9.49□□□□□ -0.89
SMAD4-208ENST00000589706 PXYLP1Q8TE99 480 aa9.49□□□□□ -0.89
SMAD4-208ENST00000589706 MCM6Q14566 821 aa9.48□□□□□ -0.89
SMAD4-208ENST00000589706 PROCA1Q8NCQ7 364 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-208ENST00000589706 NLRP7Q8WX94 980 aa9.48□□□□□ -0.89
SMAD4-208ENST00000589706 ZDHHC16Q969W1 377 aa9.48□□□□□ -0.89
SMAD4-208ENST00000589706 ATP1B4Q9UN42 357 aaPredicted RBP9.48□□□□□ -0.89
SMAD4-208ENST00000589706 EIF4G3O43432 1585 aaKnown RBP9.47□□□□□ -0.89
SMAD4-208ENST00000589706 TRAK2O60296 914 aa9.47□□□□□ -0.89
SMAD4-208ENST00000589706 TTC13Q8NBP0 860 aa9.47□□□□□ -0.89
SMAD4-208ENST00000589706 POLR3EQ9NVU0 708 aa9.47□□□□□ -0.89
SMAD4-208ENST00000589706 RBM27Q9P2N5 1060 aaKnown RBP9.47□□□□□ -0.89
SMAD4-208ENST00000589706 ZNF454Q8N9F8 522 aa9.46□□□□□ -0.9
SMAD4-208ENST00000589706 AQRO60306 1485 aaKnown RBP eCLIP9.45□□□□□ -0.91e-7■■■■□ 24.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms