RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 PKD2Q13563 968 aa29.6■■■□□ 2.33
CCDC43-204ENST00000588687 NEURL4Q96JN8 1562 aa29.6■■■□□ 2.33
CCDC43-204ENST00000588687 POLR1AO95602 1720 aaPredicted RBP29.59■■■□□ 2.33
CCDC43-204ENST00000588687 SPATA31D1Q6ZQQ2 1576 aa29.56■■■□□ 2.32
CCDC43-204ENST00000588687 LRRC9Q6ZRR7 1453 aa29.56■■■□□ 2.32
CCDC43-204ENST00000588687 VPS8Q8N3P4 1428 aa29.56■■■□□ 2.32
CCDC43-204ENST00000588687 RNF17Q9BXT8 1623 aaKnown RBP29.55■■■□□ 2.32
CCDC43-204ENST00000588687 MAST1Q9Y2H9 1570 aa29.55■■■□□ 2.32
CCDC43-204ENST00000588687 TNRQ92752 1358 aa29.53■■■□□ 2.32
CCDC43-204ENST00000588687 KIF3BO15066 747 aa29.53■■■□□ 2.32
CCDC43-204ENST00000588687 DISP3Q9P2K9 1392 aa29.52■■■□□ 2.32
CCDC43-204ENST00000588687 RSPH4AQ5TD94 716 aa29.52■■■□□ 2.32
CCDC43-204ENST00000588687 FBXO31Q5XUX0 539 aaPredicted RBP29.5■■■□□ 2.31
CCDC43-204ENST00000588687 ILDR2Q71H61 639 aa29.49■■■□□ 2.31
CCDC43-204ENST00000588687 MAP3K1Q13233 1512 aa29.48■■■□□ 2.31
CCDC43-204ENST00000588687 ZC3H13Q5T200 1668 aaKnown RBP29.47■■■□□ 2.31
CCDC43-204ENST00000588687 MROH1Q8NDA8 1641 aa29.47■■■□□ 2.31
CCDC43-204ENST00000588687 EIF2AK4Q9P2K8 1649 aaKnown RBP29.47■■■□□ 2.31
CCDC43-204ENST00000588687 ABCC3O15438 1527 aa29.45■■■□□ 2.31
CCDC43-204ENST00000588687 NLRP1Q9C000 1473 aa29.45■■■□□ 2.31
CCDC43-204ENST00000588687 MIA2Q96PC5 1412 aa29.43■■■□□ 2.3
CCDC43-204ENST00000588687 WASHC2CQ9Y4E1 1318 aa29.43■■■□□ 2.3
CCDC43-204ENST00000588687 DEPDC5O75140 1603 aa29.42■■■□□ 2.3
CCDC43-204ENST00000588687 VWDEQ8N2E2 1590 aa29.4■■■□□ 2.3
CCDC43-204ENST00000588687 UGGT1Q9NYU2 1555 aa29.4■■■□□ 2.3
CCDC43-204ENST00000588687 MYOM3Q5VTT5 1437 aa29.39■■■□□ 2.3
CCDC43-204ENST00000588687 CPS1P31327 1500 aa29.39■■■□□ 2.3
CCDC43-204ENST00000588687 MED14O60244 1454 aa29.38■■■□□ 2.29
CCDC43-204ENST00000588687 KANK4Q5T7N3 995 aaPredicted RBP29.37■■■□□ 2.29
CCDC43-204ENST00000588687 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.37■■■□□ 2.29
CCDC43-204ENST00000588687 UBAP1LF5GYI3 381 aa29.36■■■□□ 2.29
CCDC43-204ENST00000588687 TSPY4P0CV99 314 aa29.36■■■□□ 2.29
CCDC43-204ENST00000588687 TSPY10P0CW01 314 aa29.36■■■□□ 2.29
CCDC43-204ENST00000588687 SHANK2Q9UPX8 1470 aa29.36■■■□□ 2.29
CCDC43-204ENST00000588687 CEP152O94986 1710 aa29.35■■■□□ 2.29
CCDC43-204ENST00000588687 CROCC2H7BZ55 1655 aa29.34■■■□□ 2.29
CCDC43-204ENST00000588687 LOC105371045A0A1W2PR82 267 aa29.34■■■□□ 2.29
CCDC43-204ENST00000588687 ERVK-7P63135 1459 aa29.34■■■□□ 2.29
CCDC43-204ENST00000588687 IQGAP1P46940 1657 aa29.32■■■□□ 2.28
CCDC43-204ENST00000588687 DUOX2Q9NRD8 1548 aa29.3■■■□□ 2.28
CCDC43-204ENST00000588687 ALKQ9UM73 1620 aa29.3■■■□□ 2.28
CCDC43-204ENST00000588687 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
CCDC43-204ENST00000588687 NPHP4O75161 1426 aaPredicted RBP29.29■■■□□ 2.28
CCDC43-204ENST00000588687 SOCS7O14512 581 aa29.28■■■□□ 2.28
CCDC43-204ENST00000588687 STRCP1A6NGW2 1772 aa29.27■■■□□ 2.28
CCDC43-204ENST00000588687 THEMISQ8N1K5 641 aaPredicted RBP29.27■■■□□ 2.28
CCDC43-204ENST00000588687 UBR1Q8IWV7 1749 aa29.27■■■□□ 2.28
CCDC43-204ENST00000588687 ANKLE2Q86XL3 938 aa29.26■■■□□ 2.27
CCDC43-204ENST00000588687 PTPN23Q9H3S7 1636 aa29.23■■■□□ 2.27
CCDC43-204ENST00000588687 ABCC5O15440 1437 aa29.21■■■□□ 2.27
CCDC43-204ENST00000588687 ERBINQ96RT1 1412 aa29.2■■■□□ 2.27
CCDC43-204ENST00000588687 SYNMO15061 1565 aa29.19■■■□□ 2.26
CCDC43-204ENST00000588687 KIF15Q9NS87 1388 aa29.19■■■□□ 2.26
CCDC43-204ENST00000588687 ARHGAP31Q2M1Z3 1444 aa29.19■■■□□ 2.26
CCDC43-204ENST00000588687 CFAP65Q6ZU64 1925 aaKnown RBP29.17■■■□□ 2.26
CCDC43-204ENST00000588687 ARHGAP23Q9P227 1491 aa29.17■■■□□ 2.26
CCDC43-204ENST00000588687 SLIT1O75093 1534 aa29.15■■■□□ 2.26
CCDC43-204ENST00000588687 MED1Q15648 1581 aaPredicted RBP29.14■■■□□ 2.26
CCDC43-204ENST00000588687 DAPK1P53355 1430 aa29.14■■■□□ 2.26
CCDC43-204ENST00000588687 LRRC7Q96NW7 1537 aa29.14■■■□□ 2.25
CCDC43-204ENST00000588687 HSPA1LP34931 641 aa29.13■■■□□ 2.25
CCDC43-204ENST00000588687 SCAF11Q99590 1463 aaKnown RBP29.12■■■□□ 2.25
CCDC43-204ENST00000588687 FGD6Q6ZV73 1430 aa29.11■■■□□ 2.25
CCDC43-204ENST00000588687 TOM1O60784 492 aa29.1■■■□□ 2.25
CCDC43-204ENST00000588687 PIK3C2BO00750 1634 aa29.09■■■□□ 2.25
CCDC43-204ENST00000588687 PIP4K2BP78356 416 aa29.09■■■□□ 2.25
CCDC43-204ENST00000588687 LMTK2Q8IWU2 1503 aa29.08■■■□□ 2.25
CCDC43-204ENST00000588687 KDM5AP29375 1690 aaKnown RBP29.05■■■□□ 2.24
CCDC43-204ENST00000588687 SCAF1Q9H7N4 1312 aaKnown RBP29.05■■■□□ 2.24
CCDC43-204ENST00000588687 XIRP1Q702N8 1843 aaKnown RBP29.04■■■□□ 2.24
CCDC43-204ENST00000588687 RRP7BPQ9NSQ0 103 aa29.04■■■□□ 2.24
CCDC43-204ENST00000588687 LTKP29376 864 aa29.02■■■□□ 2.24
CCDC43-204ENST00000588687 EFCAB6Q5THR3 1501 aa28.99■■■□□ 2.23
CCDC43-204ENST00000588687 ADGRL2O95490 1459 aa28.97■■■□□ 2.23
CCDC43-204ENST00000588687 TMEM2Q9UHN6 1383 aa28.96■■■□□ 2.23
CCDC43-204ENST00000588687 ANKRD30AQ9BXX3 1397 aa28.95■■■□□ 2.22
CCDC43-204ENST00000588687 NOS1P29475 1434 aa28.94■■■□□ 2.22
CCDC43-204ENST00000588687 KANK1Q14678 1352 aa28.92■■■□□ 2.22
CCDC43-204ENST00000588687 TXNDC2Q86VQ3 553 aa28.92■■■□□ 2.22
CCDC43-204ENST00000588687 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.92■■■□□ 2.222e-6■□□□□ 10.7
CCDC43-204ENST00000588687 ADGRB3O60242 1522 aa28.91■■■□□ 2.22
CCDC43-204ENST00000588687 TET3O43151 1660 aa28.9■■■□□ 2.22
CCDC43-204ENST00000588687 APLP2Q06481 763 aa28.89■■■□□ 2.22
CCDC43-204ENST00000588687 CHIC2Q9UKJ5 165 aa28.87■■■□□ 2.21
CCDC43-204ENST00000588687 IDI1Q13907 227 aa28.85■■■□□ 2.21
CCDC43-204ENST00000588687 EID1Q9Y6B2 187 aa28.84■■■□□ 2.21
CCDC43-204ENST00000588687 NWD1Q149M9 1564 aa28.84■■■□□ 2.21
CCDC43-204ENST00000588687 RPRD2Q5VT52 1461 aaKnown RBP28.82■■■□□ 2.2
CCDC43-204ENST00000588687 ANKRD50Q9ULJ7 1429 aa28.78■■■□□ 2.2
CCDC43-204ENST00000588687 UNC13BO14795 1591 aa28.78■■■□□ 2.2
CCDC43-204ENST00000588687 MYO5BQ9ULV0 1848 aa28.78■■■□□ 2.2
CCDC43-204ENST00000588687 NKTRP30414 1462 aaKnown RBP28.76■■■□□ 2.19
CCDC43-204ENST00000588687 GCC2Q8IWJ2 1684 aa28.76■■■□□ 2.19
CCDC43-204ENST00000588687 ZFYVE9O95405 1425 aa28.76■■■□□ 2.19
CCDC43-204ENST00000588687 TMEM94Q12767 1356 aa28.75■■■□□ 2.19
CCDC43-204ENST00000588687 STAG3Q9UJ98 1225 aa28.74■■■□□ 2.19
CCDC43-204ENST00000588687 TMEM131LA2VDJ0 1609 aa28.73■■■□□ 2.19
CCDC43-204ENST00000588687 FAM135BQ49AJ0 1406 aa28.73■■■□□ 2.19
CCDC43-204ENST00000588687 SENP3Q9H4L4 574 aaPredicted RBP28.72■■■□□ 2.19
CCDC43-204ENST00000588687 KCNA6P17658 529 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms