RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 GTPBP6O43824 516 aaPredicted RBP8.34□□□□□ -1.07
LIG3-210ENST00000588109 FMN1Q68DA7 1419 aa8.34□□□□□ -1.07
LIG3-210ENST00000588109 ERCC6L2Q5T890 1561 aa8.33□□□□□ -1.08
LIG3-210ENST00000588109 VPS8Q8N3P4 1428 aa8.33□□□□□ -1.08
LIG3-210ENST00000588109 MS4A4AQ96JQ5 239 aa8.33□□□□□ -1.08
LIG3-210ENST00000588109 BOLA1Q9Y3E2 137 aa8.33□□□□□ -1.08
LIG3-210ENST00000588109 C3orf67Q6ZVT6 689 aa8.32□□□□□ -1.08
LIG3-210ENST00000588109 SCUBE2Q9NQ36 999 aa8.32□□□□□ -1.08
LIG3-210ENST00000588109 ATP1B4Q9UN42 357 aaPredicted RBP8.32□□□□□ -1.08
LIG3-210ENST00000588109 PTPRGP23470 1445 aa8.31□□□□□ -1.08
LIG3-210ENST00000588109 ARHGEF11O15085 1522 aa8.3□□□□□ -1.08
LIG3-210ENST00000588109 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.3□□□□□ -1.08
LIG3-210ENST00000588109 PCF11O94913 1555 aaKnown RBP8.3□□□□□ -1.08
LIG3-210ENST00000588109 POTEB2H3BUK9 544 aa8.29□□□□□ -1.08
LIG3-210ENST00000588109 CASKIN1Q8WXD9 1431 aa8.29□□□□□ -1.08
LIG3-210ENST00000588109 FYCO1Q9BQS8 1478 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 PPP1R37O75864 691 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 MICALL2Q8IY33 904 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 RIMBP3CA6NJZ7 1639 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 RIMBP3BA6NNM3 1639 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 HECW1Q76N89 1606 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 RAPGEF6Q8TEU7 1601 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 RIMBP3Q9UFD9 1639 aa8.28□□□□□ -1.08
LIG3-210ENST00000588109 PLB1Q6P1J6 1458 aa8.27□□□□□ -1.09
LIG3-210ENST00000588109 ARID3CA6NKF2 412 aa8.26□□□□□ -1.09
LIG3-210ENST00000588109 UACAQ9BZF9 1416 aa8.26□□□□□ -1.09
LIG3-210ENST00000588109 ABCA8O94911 1581 aa8.26□□□□□ -1.09
LIG3-210ENST00000588109 CCDC18Q5T9S5 1454 aa8.25□□□□□ -1.09
LIG3-210ENST00000588109 ABCC2Q92887 1545 aa8.24□□□□□ -1.09
LIG3-210ENST00000588109 PLCB2Q00722 1185 aa8.24□□□□□ -1.09
LIG3-210ENST00000588109 CYB5RLQ6IPT4 315 aa8.24□□□□□ -1.09
LIG3-210ENST00000588109 NUP153P49790 1475 aaKnown RBP8.24□□□□□ -1.09
LIG3-210ENST00000588109 POTEJP0CG39 1038 aa8.23□□□□□ -1.09
LIG3-210ENST00000588109 SLAIN1Q8ND83 568 aa8.23□□□□□ -1.09
LIG3-210ENST00000588109 TMEM121BQ9BXQ6 578 aaPredicted RBP8.23□□□□□ -1.09
LIG3-210ENST00000588109 EPRSP07814 1512 aaKnown RBP8.23□□□□□ -1.09
LIG3-210ENST00000588109 TIAM1Q13009 1591 aa8.22□□□□□ -1.09
LIG3-210ENST00000588109 CFAP43Q8NDM7 1665 aa8.22□□□□□ -1.09
LIG3-210ENST00000588109 UHRF1BP1LA0JNW5 1464 aa8.22□□□□□ -1.09
LIG3-210ENST00000588109 TMC2Q8TDI7 906 aa8.22□□□□□ -1.09
LIG3-210ENST00000588109 LRRIQ1Q96JM4 1722 aa8.22□□□□□ -1.09
LIG3-210ENST00000588109 CDK13Q14004 1512 aaKnown RBP8.22□□□□□ -1.09
LIG3-210ENST00000588109 ADCY10Q96PN6 1610 aa8.21□□□□□ -1.09
LIG3-210ENST00000588109 PPARGC1BQ86YN6 1023 aaKnown RBP8.21□□□□□ -1.1
LIG3-210ENST00000588109 CDK11AQ9UQ88 783 aaPredicted RBP8.21□□□□□ -1.1
LIG3-210ENST00000588109 MAP3K1Q13233 1512 aa8.2□□□□□ -1.1
LIG3-210ENST00000588109 ATP10BO94823 1461 aa8.19□□□□□ -1.1
LIG3-210ENST00000588109 ZCCHC11Q5TAX3 1644 aaKnown RBP8.19□□□□□ -1.1
LIG3-210ENST00000588109 HAP1P54257 671 aaPredicted RBP8.19□□□□□ -1.1
LIG3-210ENST00000588109 OTUD5Q96G74 571 aa8.19□□□□□ -1.1
LIG3-210ENST00000588109 MTUS2Q5JR59 1369 aa8.19□□□□□ -1.1
LIG3-210ENST00000588109 PLEKHD1A6NEE1 506 aa8.18□□□□□ -1.1
LIG3-210ENST00000588109 PDE4AP27815 886 aa8.18□□□□□ -1.1
LIG3-210ENST00000588109 LRRC9Q6ZRR7 1453 aa8.18□□□□□ -1.1
LIG3-210ENST00000588109 KDM5BQ9UGL1 1544 aa8.18□□□□□ -1.1
LIG3-210ENST00000588109 KANK4Q5T7N3 995 aaPredicted RBP8.17□□□□□ -1.1
LIG3-210ENST00000588109 EHBP1L1Q8N3D4 1523 aa8.17□□□□□ -1.1
LIG3-210ENST00000588109 MAGI3Q5TCQ9 1506 aa8.15□□□□□ -1.1
LIG3-210ENST00000588109 TROQ12816 1431 aaPredicted RBP8.15□□□□□ -1.1
LIG3-210ENST00000588109 TSHZ2Q9NRE2 1034 aa8.15□□□□□ -1.1
LIG3-210ENST00000588109 WDR70Q9NW82 654 aa8.15□□□□□ -1.1
LIG3-210ENST00000588109 SUPT6HQ7KZ85 1726 aaKnown RBP8.15□□□□□ -1.11
LIG3-210ENST00000588109 C2orf72A6NCS6 295 aa8.14□□□□□ -1.11
LIG3-210ENST00000588109 SNPHO15079 494 aa8.14□□□□□ -1.11
LIG3-210ENST00000588109 KCNH8Q96L42 1107 aa8.14□□□□□ -1.11
LIG3-210ENST00000588109 LARP6Q9BRS8 491 aaKnown RBP8.14□□□□□ -1.11
LIG3-210ENST00000588109 KIF14Q15058 1648 aa8.14□□□□□ -1.11
LIG3-210ENST00000588109 WDR7Q9Y4E6 1490 aa8.13□□□□□ -1.11
LIG3-210ENST00000588109 ASXL2Q76L83 1435 aa8.13□□□□□ -1.11
LIG3-210ENST00000588109 GPHNQ9NQX3 736 aaPredicted RBP8.13□□□□□ -1.11
LIG3-210ENST00000588109 NCOA2Q15596 1464 aa8.12□□□□□ -1.11
LIG3-210ENST00000588109 TMEM92Q6UXU6 159 aa8.11□□□□□ -1.11
LIG3-210ENST00000588109 MAPKBP1O60336 1514 aa8.11□□□□□ -1.11
LIG3-210ENST00000588109 CADPS2Q86UW7 1296 aa8.1□□□□□ -1.11
LIG3-210ENST00000588109 CCNB3Q8WWL7 1395 aa8.1□□□□□ -1.11
LIG3-210ENST00000588109 DDX27Q96GQ7 796 aaKnown RBP8.09□□□□□ -1.11
LIG3-210ENST00000588109 CRISPLD2Q9H0B8 497 aa8.09□□□□□ -1.11
LIG3-210ENST00000588109 PHLDB1Q86UU1 1377 aa8.09□□□□□ -1.12
LIG3-210ENST00000588109 RIMBP2O15034 1052 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 FOXK1P85037 733 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 DOK7Q18PE1 504 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 PLPP6Q8IY26 295 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 TTC37Q6PGP7 1564 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIG3-210ENST00000588109 ITSN2Q9NZM3 1697 aa8.08□□□□□ -1.12
LIG3-210ENST00000588109 NCKAP5LQ9HCH0 1330 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 MYOM3Q5VTT5 1437 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 KIF3CO14782 793 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 DSG2Q14126 1118 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 PPP1R15BQ5SWA1 713 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 ZNF710Q8N1W2 664 aa8.07□□□□□ -1.12
LIG3-210ENST00000588109 ABCC10Q5T3U5 1492 aa8.06□□□□□ -1.12
LIG3-210ENST00000588109 MYO5CQ9NQX4 1742 aa8.06□□□□□ -1.12
LIG3-210ENST00000588109 TRIM26Q12899 539 aaPredicted RBP8.06□□□□□ -1.12
LIG3-210ENST00000588109 CFDP1Q9UEE9 299 aaPredicted RBP8.06□□□□□ -1.12
LIG3-210ENST00000588109 GPATCH8Q9UKJ3 1502 aaKnown RBP8.06□□□□□ -1.12
LIG3-210ENST00000588109 ABCA9Q8IUA7 1624 aa8.06□□□□□ -1.12
LIG3-210ENST00000588109 DIP2BQ9P265 1576 aa8.05□□□□□ -1.12
LIG3-210ENST00000588109 ARHGAP5Q13017 1502 aa8.05□□□□□ -1.12
LIG3-210ENST00000588109 PREX2Q70Z35 1606 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms