RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 MIA2Q96PC5 1412 aa22.54■■□□□ 1.2
VMP1-206ENST00000587945 MYO3AQ8NEV4 1616 aa22.49■■□□□ 1.19
VMP1-206ENST00000587945 KDM5DQ9BY66 1539 aa22.49■■□□□ 1.19
VMP1-206ENST00000587945 CEP170BQ9Y4F5 1589 aaPredicted RBP22.49■■□□□ 1.19
VMP1-206ENST00000587945 TNRQ92752 1358 aa22.49■■□□□ 1.19
VMP1-206ENST00000587945 PKD2Q13563 968 aa22.47■■□□□ 1.19
VMP1-206ENST00000587945 PZPP20742 1482 aa22.46■■□□□ 1.19
VMP1-206ENST00000587945 MAST1Q9Y2H9 1570 aa22.46■■□□□ 1.19
VMP1-206ENST00000587945 A2ML1A8K2U0 1454 aa22.45■■□□□ 1.18
VMP1-206ENST00000587945 PLA2R1Q13018 1463 aa22.45■■□□□ 1.18
VMP1-206ENST00000587945 ABCC5O15440 1437 aa22.43■■□□□ 1.18
VMP1-206ENST00000587945 ZNF142P52746 1687 aaPredicted RBP22.42■■□□□ 1.18
VMP1-206ENST00000587945 LTBP4Q8N2S1 1624 aa22.42■■□□□ 1.18
VMP1-206ENST00000587945 FAM135AQ9P2D6 1515 aa22.42■■□□□ 1.18
VMP1-206ENST00000587945 TCOF1Q13428 1488 aaKnown RBP22.42■■□□□ 1.18
VMP1-206ENST00000587945 ZNF335Q9H4Z2 1342 aaPredicted RBP22.42■■□□□ 1.18
VMP1-206ENST00000587945 RRP7BPQ9NSQ0 103 aa22.42■■□□□ 1.18
VMP1-206ENST00000587945 KIF15Q9NS87 1388 aa22.39■■□□□ 1.18
VMP1-206ENST00000587945 FGD6Q6ZV73 1430 aa22.39■■□□□ 1.17
VMP1-206ENST00000587945 DNMT1P26358 1616 aaKnown RBP22.39■■□□□ 1.17
VMP1-206ENST00000587945 ABCC3O15438 1527 aa22.38■■□□□ 1.17
VMP1-206ENST00000587945 PTPN23Q9H3S7 1636 aa22.37■■□□□ 1.17
VMP1-206ENST00000587945 RNF17Q9BXT8 1623 aaKnown RBP22.36■■□□□ 1.17
VMP1-206ENST00000587945 CHIC2Q9UKJ5 165 aa22.36■■□□□ 1.17
VMP1-206ENST00000587945 DAPK1P53355 1430 aa22.36■■□□□ 1.17
VMP1-206ENST00000587945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.36■■□□□ 1.17
VMP1-206ENST00000587945 DUOX2Q9NRD8 1548 aa22.36■■□□□ 1.17
VMP1-206ENST00000587945 SHANK2Q9UPX8 1470 aa22.34■■□□□ 1.17
VMP1-206ENST00000587945 THEMISQ8N1K5 641 aaPredicted RBP22.34■■□□□ 1.17
VMP1-206ENST00000587945 MROH1Q8NDA8 1641 aa22.33■■□□□ 1.17
VMP1-206ENST00000587945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.33■■□□□ 1.171e-6■□□□□ 10.3
VMP1-206ENST00000587945 NLRP1Q9C000 1473 aa22.33■■□□□ 1.16
VMP1-206ENST00000587945 ANKLE2Q86XL3 938 aa22.32■■□□□ 1.16
VMP1-206ENST00000587945 EIF2AK4Q9P2K8 1649 aaKnown RBP22.31■■□□□ 1.16
VMP1-206ENST00000587945 ERBINQ96RT1 1412 aa22.3■■□□□ 1.16
VMP1-206ENST00000587945 ERVK-7P63135 1459 aa22.29■■□□□ 1.16
VMP1-206ENST00000587945 FAM50AQ14320 339 aaKnown RBP22.29■■□□□ 1.16
VMP1-206ENST00000587945 UGGT1Q9NYU2 1555 aa22.29■■□□□ 1.16
VMP1-206ENST00000587945 IQSEC2Q5JU85 1478 aa22.28■■□□□ 1.16
VMP1-206ENST00000587945 ANKRD30AQ9BXX3 1397 aa22.27■■□□□ 1.16
VMP1-206ENST00000587945 SPATA31D1Q6ZQQ2 1576 aa22.27■■□□□ 1.16
VMP1-206ENST00000587945 NEURL4Q96JN8 1562 aa22.26■■□□□ 1.15
VMP1-206ENST00000587945 UBAP1LF5GYI3 381 aa22.25■■□□□ 1.15
VMP1-206ENST00000587945 CROCC2H7BZ55 1655 aa22.25■■□□□ 1.15
VMP1-206ENST00000587945 ZC3H13Q5T200 1668 aaKnown RBP22.25■■□□□ 1.15
VMP1-206ENST00000587945 NPHP4O75161 1426 aaPredicted RBP22.23■■□□□ 1.15
VMP1-206ENST00000587945 PRDM15P57071 1507 aaPredicted RBP22.22■■□□□ 1.15
VMP1-206ENST00000587945 CEP152O94986 1710 aa22.22■■□□□ 1.15
VMP1-206ENST00000587945 KANK1Q14678 1352 aa22.21■■□□□ 1.15
VMP1-206ENST00000587945 ARHGAP31Q2M1Z3 1444 aa22.21■■□□□ 1.15
VMP1-206ENST00000587945 MED14O60244 1454 aa22.18■■□□□ 1.14
VMP1-206ENST00000587945 POLR1AO95602 1720 aaPredicted RBP22.17■■□□□ 1.14
VMP1-206ENST00000587945 ADGRL2O95490 1459 aa22.15■■□□□ 1.14
VMP1-206ENST00000587945 LTKP29376 864 aa22.15■■□□□ 1.14
VMP1-206ENST00000587945 PPARGC1BQ86YN6 1023 aaKnown RBP22.15■■□□□ 1.14
VMP1-206ENST00000587945 TXNDC2Q86VQ3 553 aa22.14■■□□□ 1.13
VMP1-206ENST00000587945 DEPDC5O75140 1603 aa22.13■■□□□ 1.13
VMP1-206ENST00000587945 VWDEQ8N2E2 1590 aa22.13■■□□□ 1.13
VMP1-206ENST00000587945 CPS1P31327 1500 aa22.12■■□□□ 1.13
VMP1-206ENST00000587945 ANKRD50Q9ULJ7 1429 aa22.12■■□□□ 1.13
VMP1-206ENST00000587945 DISP3Q9P2K9 1392 aa22.12■■□□□ 1.13
VMP1-206ENST00000587945 LMTK2Q8IWU2 1503 aa22.11■■□□□ 1.13
VMP1-206ENST00000587945 IDI1Q13907 227 aa22.11■■□□□ 1.13
VMP1-206ENST00000587945 STAG3Q9UJ98 1225 aa22.11■■□□□ 1.13
VMP1-206ENST00000587945 CFAP65Q6ZU64 1925 aaKnown RBP22.11■■□□□ 1.13
VMP1-206ENST00000587945 PIP4K2BP78356 416 aa22.1■■□□□ 1.13
VMP1-206ENST00000587945 SCAF11Q99590 1463 aaKnown RBP22.09■■□□□ 1.13
VMP1-206ENST00000587945 SCAF1Q9H7N4 1312 aaKnown RBP22.09■■□□□ 1.13
VMP1-206ENST00000587945 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
VMP1-206ENST00000587945 UBR1Q8IWV7 1749 aa22.09■■□□□ 1.13
VMP1-206ENST00000587945 EID1Q9Y6B2 187 aa22.08■■□□□ 1.13
VMP1-206ENST00000587945 TOM1O60784 492 aa22.07■■□□□ 1.12
VMP1-206ENST00000587945 IQGAP1P46940 1657 aa22.07■■□□□ 1.12
VMP1-206ENST00000587945 ITGAEP38570 1179 aa22.06■■□□□ 1.12
VMP1-206ENST00000587945 TMEM2Q9UHN6 1383 aa22.06■■□□□ 1.12
VMP1-206ENST00000587945 SLIT1O75093 1534 aa22.06■■□□□ 1.12
VMP1-206ENST00000587945 NOS1P29475 1434 aa22.05■■□□□ 1.12
VMP1-206ENST00000587945 PIK3C2BO00750 1634 aa22.03■■□□□ 1.12
VMP1-206ENST00000587945 EFCAB6Q5THR3 1501 aa22.03■■□□□ 1.12
VMP1-206ENST00000587945 HSPA1LP34931 641 aa22.02■■□□□ 1.12
VMP1-206ENST00000587945 ILDR2Q71H61 639 aa22.02■■□□□ 1.12
VMP1-206ENST00000587945 SYNMO15061 1565 aa22.02■■□□□ 1.12
VMP1-206ENST00000587945 LRRC7Q96NW7 1537 aa22.01■■□□□ 1.11
VMP1-206ENST00000587945 SLC52A1Q9NWF4 448 aa22■■□□□ 1.11
VMP1-206ENST00000587945 ROCK1Q13464 1354 aa21.99■■□□□ 1.11
VMP1-206ENST00000587945 SLC26A8Q96RN1 970 aa21.96■■□□□ 1.11
VMP1-206ENST00000587945 SENP3Q9H4L4 574 aaPredicted RBP21.96■■□□□ 1.11
VMP1-206ENST00000587945 STRCP1A6NGW2 1772 aa21.96■■□□□ 1.11
VMP1-206ENST00000587945 RPRD2Q5VT52 1461 aaKnown RBP21.95■■□□□ 1.1
VMP1-206ENST00000587945 ALKQ9UM73 1620 aa21.94■■□□□ 1.1
VMP1-206ENST00000587945 ADGRB3O60242 1522 aa21.93■■□□□ 1.1
VMP1-206ENST00000587945 BCANQ96GW7 911 aa21.92■■□□□ 1.1
VMP1-206ENST00000587945 NUP155O75694 1391 aa21.91■■□□□ 1.1
VMP1-206ENST00000587945 CHGAP10645 457 aaKnown RBP21.91■■□□□ 1.1
VMP1-206ENST00000587945 UNC13BO14795 1591 aa21.9■■□□□ 1.1
VMP1-206ENST00000587945 TET3O43151 1660 aa21.89■■□□□ 1.1
VMP1-206ENST00000587945 KCNA6P17658 529 aa21.89■■□□□ 1.09
VMP1-206ENST00000587945 RBM33Q96EV2 1170 aaKnown RBP21.88■■□□□ 1.09
VMP1-206ENST00000587945 KDM5AP29375 1690 aaKnown RBP21.88■■□□□ 1.09
VMP1-206ENST00000587945 PPP1R15AO75807 674 aaPredicted RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms