RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 ROCK1Q13464 1354 aa15.25■□□□□ 0.03
LIG3-203ENST00000585370 RSPH4AQ5TD94 716 aa15.25■□□□□ 0.03
LIG3-203ENST00000585370 PTPRTO14522 1441 aa15.25■□□□□ 0.03
LIG3-203ENST00000585370 NPATQ14207 1427 aa15.25■□□□□ 0.03
LIG3-203ENST00000585370 MROH2AA6NES4 1674 aa15.23■□□□□ 0.03
LIG3-203ENST00000585370 DAPK1P53355 1430 aa15.22■□□□□ 0.03
LIG3-203ENST00000585370 NAIPQ13075 1403 aa15.22■□□□□ 0.03
LIG3-203ENST00000585370 NCOA1Q15788 1441 aa15.22■□□□□ 0.03
LIG3-203ENST00000585370 ABCC5O15440 1437 aa15.21■□□□□ 0.03
LIG3-203ENST00000585370 PPP6R1Q9UPN7 881 aa15.21■□□□□ 0.03
LIG3-203ENST00000585370 CLTCQ00610 1675 aaKnown RBP15.21■□□□□ 0.03
LIG3-203ENST00000585370 RTEL1-TNFRSF6BF6WH68 1400 aa15.2■□□□□ 0.02
LIG3-203ENST00000585370 DNMT1P26358 1616 aaKnown RBP15.2■□□□□ 0.02
LIG3-203ENST00000585370 CAMSAP2Q08AD1 1489 aa15.2■□□□□ 0.02
LIG3-203ENST00000585370 NCKAP5LQ9HCH0 1330 aa15.19■□□□□ 0.02
LIG3-203ENST00000585370 CAMSAP1Q5T5Y3 1602 aa15.19■□□□□ 0.02
LIG3-203ENST00000585370 DHX29Q7Z478 1369 aaKnown RBP15.19■□□□□ 0.02
LIG3-203ENST00000585370 ADGBQ8N7X0 1667 aa15.19■□□□□ 0.02
LIG3-203ENST00000585370 CHIC2Q9UKJ5 165 aa15.17■□□□□ 0.02
LIG3-203ENST00000585370 LTBP4Q8N2S1 1624 aa15.17■□□□□ 0.02
LIG3-203ENST00000585370 TSPY4P0CV99 314 aa15.16■□□□□ 0.02
LIG3-203ENST00000585370 TSPY10P0CW01 314 aa15.16■□□□□ 0.02
LIG3-203ENST00000585370 RRP7BPQ9NSQ0 103 aa15.16■□□□□ 0.02
LIG3-203ENST00000585370 KIF3BO15066 747 aa15.15■□□□□ 0.02
LIG3-203ENST00000585370 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
LIG3-203ENST00000585370 CCDC141Q6ZP82 1450 aa15.14■□□□□ 0.01
LIG3-203ENST00000585370 ANKRD30AQ9BXX3 1397 aa15.14■□□□□ 0.01
LIG3-203ENST00000585370 ADGRL2O95490 1459 aa15.14■□□□□ 0.01
LIG3-203ENST00000585370 SHANK2Q9UPX8 1470 aa15.14■□□□□ 0.01
LIG3-203ENST00000585370 PKD2Q13563 968 aa15.13■□□□□ 0.01
LIG3-203ENST00000585370 FBXO31Q5XUX0 539 aaPredicted RBP15.13■□□□□ 0.01
LIG3-203ENST00000585370 MYO3AQ8NEV4 1616 aa15.13■□□□□ 0.01
LIG3-203ENST00000585370 GCC2Q8IWJ2 1684 aa15.12■□□□□ 0.01
LIG3-203ENST00000585370 ARHGEF5Q12774 1597 aa15.12■□□□□ 0.01
LIG3-203ENST00000585370 CEP170BQ9Y4F5 1589 aaPredicted RBP15.12■□□□□ 0.01
LIG3-203ENST00000585370 PLA2R1Q13018 1463 aa15.11■□□□□ 0.01
LIG3-203ENST00000585370 ZNF142P52746 1687 aaPredicted RBP15.11■□□□□ 0.01
LIG3-203ENST00000585370 ZNF335Q9H4Z2 1342 aaPredicted RBP15.11■□□□□ 0.01
LIG3-203ENST00000585370 WASHC2CQ9Y4E1 1318 aa15.1■□□□□ 0.01
LIG3-203ENST00000585370 A2ML1A8K2U0 1454 aa15.08■□□□□ 0.01
LIG3-203ENST00000585370 IQSEC2Q5JU85 1478 aa15.08■□□□□ 0
LIG3-203ENST00000585370 TRIM52Q96A61 297 aa15.07■□□□□ 0
LIG3-203ENST00000585370 TNRQ92752 1358 aa15.07■□□□□ 0
LIG3-203ENST00000585370 PZPP20742 1482 aa15.06■□□□□ 0
LIG3-203ENST00000585370 KDM5DQ9BY66 1539 aa15.06■□□□□ 0
LIG3-203ENST00000585370 CROCC2H7BZ55 1655 aa15.06■□□□□ 0
LIG3-203ENST00000585370 FAM135AQ9P2D6 1515 aa15.03■□□□□ -0
LIG3-203ENST00000585370 MPHOSPH9Q99550 1183 aa15.03■□□□□ -0
LIG3-203ENST00000585370 DISP3Q9P2K9 1392 aa15.02■□□□□ -0
LIG3-203ENST00000585370 MAST1Q9Y2H9 1570 aa15.02□□□□□ -0.01
LIG3-203ENST00000585370 ANKRD50Q9ULJ7 1429 aa15.01□□□□□ -0.01
LIG3-203ENST00000585370 UBAP1LF5GYI3 381 aa15.01□□□□□ -0.01
LIG3-203ENST00000585370 ILDR2Q71H61 639 aa15.01□□□□□ -0.01
LIG3-203ENST00000585370 THEMISQ8N1K5 641 aaPredicted RBP15.01□□□□□ -0.01
LIG3-203ENST00000585370 ANKLE2Q86XL3 938 aa15□□□□□ -0.01
LIG3-203ENST00000585370 KIF15Q9NS87 1388 aa14.98□□□□□ -0.01
LIG3-203ENST00000585370 NEURL4Q96JN8 1562 aa14.98□□□□□ -0.01
LIG3-203ENST00000585370 NLRP1Q9C000 1473 aa14.98□□□□□ -0.01
LIG3-203ENST00000585370 ZNF316A6NFI3 1004 aaPredicted RBP14.98□□□□□ -0.01
LIG3-203ENST00000585370 RNF17Q9BXT8 1623 aaKnown RBP14.98□□□□□ -0.01
LIG3-203ENST00000585370 ABCC3O15438 1527 aa14.97□□□□□ -0.01
LIG3-203ENST00000585370 SIN3AQ96ST3 1273 aa14.97□□□□□ -0.01
LIG3-203ENST00000585370 NEUROD1Q13562 356 aa14.96□□□□□ -0.01
LIG3-203ENST00000585370 SLC4A1APQ9BWU0 796 aaKnown RBP14.96□□□□□ -0.01
LIG3-203ENST00000585370 UGGT1Q9NYU2 1555 aa14.96□□□□□ -0.01
LIG3-203ENST00000585370 POLR1AO95602 1720 aaPredicted RBP14.95□□□□□ -0.02
LIG3-203ENST00000585370 MROH1Q8NDA8 1641 aa14.95□□□□□ -0.02
LIG3-203ENST00000585370 EIF2AK4Q9P2K8 1649 aaKnown RBP14.94□□□□□ -0.02
LIG3-203ENST00000585370 MED14O60244 1454 aa14.94□□□□□ -0.02
LIG3-203ENST00000585370 SPATA31D1Q6ZQQ2 1576 aa14.94□□□□□ -0.02
LIG3-203ENST00000585370 DUOX2Q9NRD8 1548 aa14.93□□□□□ -0.02
LIG3-203ENST00000585370 TONSLQ96HA7 1378 aa14.93□□□□□ -0.02
LIG3-203ENST00000585370 ERVK-7P63135 1459 aa14.93□□□□□ -0.02
LIG3-203ENST00000585370 NPHP4O75161 1426 aaPredicted RBP14.92□□□□□ -0.02
LIG3-203ENST00000585370 CFAP65Q6ZU64 1925 aaKnown RBP14.92□□□□□ -0.02
LIG3-203ENST00000585370 PPP1R15AO75807 674 aaPredicted RBP14.92□□□□□ -0.02
LIG3-203ENST00000585370 ZC3H13Q5T200 1668 aaKnown RBP14.92□□□□□ -0.02
LIG3-203ENST00000585370 CPS1P31327 1500 aa14.92□□□□□ -0.02
LIG3-203ENST00000585370 VWDEQ8N2E2 1590 aa14.91□□□□□ -0.02
LIG3-203ENST00000585370 DEPDC5O75140 1603 aa14.91□□□□□ -0.02
LIG3-203ENST00000585370 NUP155O75694 1391 aa14.9□□□□□ -0.02
LIG3-203ENST00000585370 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
LIG3-203ENST00000585370 CEP152O94986 1710 aa14.89□□□□□ -0.03
LIG3-203ENST00000585370 TOM1O60784 492 aa14.89□□□□□ -0.03
LIG3-203ENST00000585370 PIP4K2BP78356 416 aa14.89□□□□□ -0.03
LIG3-203ENST00000585370 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.89□□□□□ -0.03
LIG3-203ENST00000585370 ERBINQ96RT1 1412 aa14.89□□□□□ -0.03
LIG3-203ENST00000585370 SOCS7O14512 581 aa14.88□□□□□ -0.03
LIG3-203ENST00000585370 HSPA1LP34931 641 aa14.88□□□□□ -0.03
LIG3-203ENST00000585370 ARHGAP31Q2M1Z3 1444 aa14.87□□□□□ -0.03
LIG3-203ENST00000585370 LTKP29376 864 aa14.87□□□□□ -0.03
LIG3-203ENST00000585370 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
LIG3-203ENST00000585370 IQGAP1P46940 1657 aa14.87□□□□□ -0.03
LIG3-203ENST00000585370 PRDM15P57071 1507 aaPredicted RBP14.86□□□□□ -0.03
LIG3-203ENST00000585370 TXNDC2Q86VQ3 553 aa14.85□□□□□ -0.03
LIG3-203ENST00000585370 UBR1Q8IWV7 1749 aa14.85□□□□□ -0.03
LIG3-203ENST00000585370 STRCP1A6NGW2 1772 aa14.83□□□□□ -0.03
LIG3-203ENST00000585370 ALKQ9UM73 1620 aa14.83□□□□□ -0.04
LIG3-203ENST00000585370 RPRD2Q5VT52 1461 aaKnown RBP14.82□□□□□ -0.04
LIG3-203ENST00000585370 SCAF11Q99590 1463 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms