RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 KIF3BO15066 747 aa35.14■■■■□ 3.22
SHMT1-210ENST00000583780 TNRQ92752 1358 aa35.08■■■■□ 3.21
SHMT1-210ENST00000583780 RSPH4AQ5TD94 716 aa35.06■■■■□ 3.2
SHMT1-210ENST00000583780 NEURL4Q96JN8 1562 aa35.05■■■■□ 3.2
SHMT1-210ENST00000583780 PZPP20742 1482 aa35.04■■■■□ 3.2
SHMT1-210ENST00000583780 CCDC141Q6ZP82 1450 aa35.04■■■■□ 3.2
SHMT1-210ENST00000583780 POLR1AO95602 1720 aaPredicted RBP35.03■■■■□ 3.2
SHMT1-210ENST00000583780 WASHC2CQ9Y4E1 1318 aa35.03■■■■□ 3.2
SHMT1-210ENST00000583780 NCOA2Q15596 1464 aa35.03■■■■□ 3.2
SHMT1-210ENST00000583780 CAMSAP2Q08AD1 1489 aa35.01■■■■□ 3.19
SHMT1-210ENST00000583780 KDM5DQ9BY66 1539 aa35.01■■■■□ 3.19
SHMT1-210ENST00000583780 SHANK2Q9UPX8 1470 aa34.98■■■■□ 3.19
SHMT1-210ENST00000583780 FAM135AQ9P2D6 1515 aa34.98■■■■□ 3.19
SHMT1-210ENST00000583780 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.98■■■■□ 3.19
SHMT1-210ENST00000583780 MIA2Q96PC5 1412 aa34.98■■■■□ 3.19
SHMT1-210ENST00000583780 HSPA1LP34931 641 aa34.97■■■■□ 3.19
SHMT1-210ENST00000583780 ANKLE2Q86XL3 938 aa34.97■■■■□ 3.19
SHMT1-210ENST00000583780 THEMISQ8N1K5 641 aaPredicted RBP34.96■■■■□ 3.19
SHMT1-210ENST00000583780 CPS1P31327 1500 aa34.95■■■■□ 3.19
SHMT1-210ENST00000583780 TOM1O60784 492 aa34.93■■■■□ 3.18
SHMT1-210ENST00000583780 PIP4K2BP78356 416 aa34.92■■■■□ 3.18
SHMT1-210ENST00000583780 TSPY4P0CV99 314 aa34.91■■■■□ 3.18
SHMT1-210ENST00000583780 TSPY10P0CW01 314 aa34.91■■■■□ 3.18
SHMT1-210ENST00000583780 ARHGEF5Q12774 1597 aa34.91■■■■□ 3.18
SHMT1-210ENST00000583780 VWDEQ8N2E2 1590 aa34.9■■■■□ 3.18
SHMT1-210ENST00000583780 NLRP1Q9C000 1473 aa34.89■■■■□ 3.18
SHMT1-210ENST00000583780 SCAF1Q9H7N4 1312 aaKnown RBP34.88■■■■□ 3.17
SHMT1-210ENST00000583780 MED14O60244 1454 aa34.88■■■■□ 3.17
SHMT1-210ENST00000583780 UGGT1Q9NYU2 1555 aa34.87■■■■□ 3.17
SHMT1-210ENST00000583780 DEPDC5O75140 1603 aa34.84■■■■□ 3.17
SHMT1-210ENST00000583780 NPHP4O75161 1426 aaPredicted RBP34.84■■■■□ 3.17
SHMT1-210ENST00000583780 ALKQ9UM73 1620 aa34.81■■■■□ 3.16
SHMT1-210ENST00000583780 RNF17Q9BXT8 1623 aaKnown RBP34.78■■■■□ 3.16
SHMT1-210ENST00000583780 MED1Q15648 1581 aaPredicted RBP34.78■■■■□ 3.16
SHMT1-210ENST00000583780 STRCP1A6NGW2 1772 aa34.77■■■■□ 3.16
SHMT1-210ENST00000583780 ABCC3O15438 1527 aa34.76■■■■□ 3.16
SHMT1-210ENST00000583780 CFAP65Q6ZU64 1925 aaKnown RBP34.76■■■■□ 3.15
SHMT1-210ENST00000583780 MAST1Q9Y2H9 1570 aa34.75■■■■□ 3.15
SHMT1-210ENST00000583780 LRRC9Q6ZRR7 1453 aa34.75■■■■□ 3.15
SHMT1-210ENST00000583780 IQGAP1P46940 1657 aa34.74■■■■□ 3.15
SHMT1-210ENST00000583780 KANK4Q5T7N3 995 aaPredicted RBP34.7■■■■□ 3.15
SHMT1-210ENST00000583780 MROH1Q8NDA8 1641 aa34.7■■■■□ 3.14
SHMT1-210ENST00000583780 ZC3H13Q5T200 1668 aaKnown RBP34.7■■■■□ 3.14
SHMT1-210ENST00000583780 ERVK-7P63135 1459 aa34.69■■■■□ 3.14
SHMT1-210ENST00000583780 EIF2AK4Q9P2K8 1649 aaKnown RBP34.67■■■■□ 3.14
SHMT1-210ENST00000583780 LRRC7Q96NW7 1537 aa34.67■■■■□ 3.14
SHMT1-210ENST00000583780 VPS8Q8N3P4 1428 aa34.64■■■■□ 3.14
SHMT1-210ENST00000583780 CEP152O94986 1710 aa34.64■■■■□ 3.14
SHMT1-210ENST00000583780 UBR1Q8IWV7 1749 aa34.63■■■■□ 3.13
SHMT1-210ENST00000583780 LOC105371045A0A1W2PR82 267 aa34.61■■■■□ 3.13
SHMT1-210ENST00000583780 LTKP29376 864 aa34.6■■■■□ 3.13
SHMT1-210ENST00000583780 MYOM3Q5VTT5 1437 aa34.57■■■■□ 3.13
SHMT1-210ENST00000583780 MAP3K1Q13233 1512 aa34.56■■■■□ 3.12
SHMT1-210ENST00000583780 DUOX2Q9NRD8 1548 aa34.55■■■■□ 3.12
SHMT1-210ENST00000583780 ARHGAP23Q9P227 1491 aa34.53■■■■□ 3.12
SHMT1-210ENST00000583780 TXNDC2Q86VQ3 553 aa34.53■■■■□ 3.12
SHMT1-210ENST00000583780 SCAF11Q99590 1463 aaKnown RBP34.52■■■■□ 3.12
SHMT1-210ENST00000583780 SENP3Q9H4L4 574 aaPredicted RBP34.52■■■■□ 3.12
SHMT1-210ENST00000583780 SYNMO15061 1565 aa34.52■■■■□ 3.12
SHMT1-210ENST00000583780 ARHGAP31Q2M1Z3 1444 aa34.51■■■■□ 3.12
SHMT1-210ENST00000583780 SLIT1O75093 1534 aa34.5■■■■□ 3.11
SHMT1-210ENST00000583780 PHF23Q9BUL5 403 aaPredicted RBP34.49■■■■□ 3.11
SHMT1-210ENST00000583780 XIRP1Q702N8 1843 aaKnown RBP34.48■■■■□ 3.11
SHMT1-210ENST00000583780 RRP7BPQ9NSQ0 103 aa34.46■■■■□ 3.11
SHMT1-210ENST00000583780 ABCC5O15440 1437 aa34.46■■■■□ 3.11
SHMT1-210ENST00000583780 KIF15Q9NS87 1388 aa34.45■■■■□ 3.11
SHMT1-210ENST00000583780 PRDM15P57071 1507 aaPredicted RBP34.45■■■■□ 3.1
SHMT1-210ENST00000583780 ERBINQ96RT1 1412 aa34.4■■■■□ 3.1
SHMT1-210ENST00000583780 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.4■■■■□ 3.1
SHMT1-210ENST00000583780 RGS17Q9UGC6 210 aaPredicted RBP34.39■■■■□ 3.1
SHMT1-210ENST00000583780 EID1Q9Y6B2 187 aa34.39■■■■□ 3.1
SHMT1-210ENST00000583780 PIK3C2BO00750 1634 aa34.39■■■■□ 3.1
SHMT1-210ENST00000583780 CROCC2H7BZ55 1655 aa34.38■■■■□ 3.09
SHMT1-210ENST00000583780 TMEM2Q9UHN6 1383 aa34.37■■■■□ 3.09
SHMT1-210ENST00000583780 IDI1Q13907 227 aa34.35■■■■□ 3.09
SHMT1-210ENST00000583780 PTPN23Q9H3S7 1636 aa34.33■■■■□ 3.09
SHMT1-210ENST00000583780 DAPK1P53355 1430 aa34.31■■■■□ 3.08
SHMT1-210ENST00000583780 STAG3Q9UJ98 1225 aa34.29■■■■□ 3.08
SHMT1-210ENST00000583780 FAM135BQ49AJ0 1406 aa34.29■■■■□ 3.08
SHMT1-210ENST00000583780 KANK1Q14678 1352 aa34.27■■■■□ 3.08
SHMT1-210ENST00000583780 KCNA6P17658 529 aa34.27■■■■□ 3.08
SHMT1-210ENST00000583780 TET3O43151 1660 aa34.27■■■■□ 3.08
SHMT1-210ENST00000583780 KDM5AP29375 1690 aaKnown RBP34.27■■■■□ 3.08
SHMT1-210ENST00000583780 LMTK2Q8IWU2 1503 aa34.25■■■■□ 3.07
SHMT1-210ENST00000583780 CHIC2Q9UKJ5 165 aa34.25■■■■□ 3.07
SHMT1-210ENST00000583780 EFCAB6Q5THR3 1501 aa34.25■■■■□ 3.07
SHMT1-210ENST00000583780 TMEM94Q12767 1356 aa34.24■■■■□ 3.07
SHMT1-210ENST00000583780 SLC26A8Q96RN1 970 aa34.23■■■■□ 3.07
SHMT1-210ENST00000583780 NOS1P29475 1434 aa34.21■■■■□ 3.07
SHMT1-210ENST00000583780 FGD6Q6ZV73 1430 aa34.21■■■■□ 3.07
SHMT1-210ENST00000583780 RBM33Q96EV2 1170 aaKnown RBP34.2■■■■□ 3.07
SHMT1-210ENST00000583780 PROSER2Q86WR7 435 aaPredicted RBP34.19■■■■□ 3.06
SHMT1-210ENST00000583780 ANKRD30AQ9BXX3 1397 aa34.19■■■■□ 3.06
SHMT1-210ENST00000583780 APLP2Q06481 763 aa34.16■■■■□ 3.06
SHMT1-210ENST00000583780 POTEAQ6S8J7 498 aa34.12■■■■□ 3.05
SHMT1-210ENST00000583780 SLC52A1Q9NWF4 448 aa34.12■■■■□ 3.05
SHMT1-210ENST00000583780 ROBO1Q9Y6N7 1651 aa34.12■■■■□ 3.05
SHMT1-210ENST00000583780 ADGRB3O60242 1522 aa34.09■■■■□ 3.05
SHMT1-210ENST00000583780 NWD1Q149M9 1564 aa34.06■■■■□ 3.04
SHMT1-210ENST00000583780 ADGRL2O95490 1459 aa34.04■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms