RNA–Protein interactions for RNA: ENST00000582892.1

NF1-222, Transcript of neurofibromin 1, human

TSL 4

Gene NF1, Length 462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-222	ENST00000582892	ALK	Q9UM73	1620 aa		12.15	□□□□□ -0.46
NF1-222	ENST00000582892	CDC42BPB	Q9Y5S2	1711 aa		12.15	□□□□□ -0.46
NF1-222	ENST00000582892	PLEKHG5	O94827	1062 aa		12.15	□□□□□ -0.46
NF1-222	ENST00000582892	KIDINS220	Q9ULH0	1771 aa		12.15	□□□□□ -0.46
NF1-222	ENST00000582892	AGL	P35573	1532 aa		12.14	□□□□□ -0.47
NF1-222	ENST00000582892	ARHGAP5	Q13017	1502 aa		12.14	□□□□□ -0.47
NF1-222	ENST00000582892	MROH2A	A6NES4	1674 aa		12.13	□□□□□ -0.47
NF1-222	ENST00000582892	FXR2	P51116	673 aa	Known RBP eCLIP	12.13	□□□□□ -0.47	4e-6	■■□□□ 13.5
NF1-222	ENST00000582892	EFCAB2	Q5VUJ9	269 aa		12.13	□□□□□ -0.47
NF1-222	ENST00000582892	MYT1L	Q9UL68	1186 aa		12.13	□□□□□ -0.47
NF1-222	ENST00000582892	LRRIQ1	Q96JM4	1722 aa		12.13	□□□□□ -0.47
NF1-222	ENST00000582892	TCOF1	Q13428	1488 aa	Known RBP	12.13	□□□□□ -0.47
NF1-222	ENST00000582892	CLTC	Q00610	1675 aa	Known RBP	12.13	□□□□□ -0.47
NF1-222	ENST00000582892	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	12.12	□□□□□ -0.47
NF1-222	ENST00000582892	ITSN2	Q9NZM3	1697 aa		12.12	□□□□□ -0.47
NF1-222	ENST00000582892	MLH3	Q9UHC1	1453 aa		12.1	□□□□□ -0.47
NF1-222	ENST00000582892	PIP4P2	Q8N4L2	257 aa		12.09	□□□□□ -0.47
NF1-222	ENST00000582892	ESF1	Q9H501	851 aa	Known RBP	12.09	□□□□□ -0.47
NF1-222	ENST00000582892	ABCC1	P33527	1531 aa		12.09	□□□□□ -0.47
NF1-222	ENST00000582892	NPAT	Q14207	1427 aa		12.09	□□□□□ -0.47
NF1-222	ENST00000582892	POLR1A	O95602	1720 aa	Predicted RBP	12.08	□□□□□ -0.47
NF1-222	ENST00000582892	PLA2R1	Q13018	1463 aa		12.08	□□□□□ -0.47
NF1-222	ENST00000582892	NEURL4	Q96JN8	1562 aa		12.08	□□□□□ -0.48
NF1-222	ENST00000582892	CNTLN	Q9NXG0	1405 aa		12.07	□□□□□ -0.48
NF1-222	ENST00000582892	PREX2	Q70Z35	1606 aa		12.07	□□□□□ -0.48
NF1-222	ENST00000582892	ZMYM3	Q14202	1370 aa		12.06	□□□□□ -0.48
NF1-222	ENST00000582892	RGS17	Q9UGC6	210 aa	Predicted RBP	12.06	□□□□□ -0.48
NF1-222	ENST00000582892	SETD1A	O15047	1707 aa	Known RBP	12.06	□□□□□ -0.48
NF1-222	ENST00000582892	PRKAR2A	P13861	404 aa	Known RBP	12.05	□□□□□ -0.48
NF1-222	ENST00000582892	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.05	□□□□□ -0.48
NF1-222	ENST00000582892	DNMT1	P26358	1616 aa	Known RBP	12.04	□□□□□ -0.48
NF1-222	ENST00000582892	PTPRK	Q15262	1439 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	PKD2	Q13563	968 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	MIER1	Q8N108	512 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	PLCD3	Q8N3E9	789 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	STRCP1	A6NGW2	1772 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	SRCAP	Q6ZRS2	3230 aa		12.04	□□□□□ -0.48
NF1-222	ENST00000582892	CDC42BPA	Q5VT25	1732 aa		12.03	□□□□□ -0.48
NF1-222	ENST00000582892	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.03	□□□□□ -0.48
NF1-222	ENST00000582892	SAMD9L	Q8IVG5	1584 aa		12.03	□□□□□ -0.48
NF1-222	ENST00000582892	VWDE	Q8N2E2	1590 aa		12.03	□□□□□ -0.48
NF1-222	ENST00000582892	TRO	Q12816	1431 aa	Predicted RBP	12.03	□□□□□ -0.48
NF1-222	ENST00000582892	SHANK2	Q9UPX8	1470 aa		12.02	□□□□□ -0.48
NF1-222	ENST00000582892	CPS1	P31327	1500 aa		12.01	□□□□□ -0.49
NF1-222	ENST00000582892	TOM1	O60784	492 aa		12.01	□□□□□ -0.49
NF1-222	ENST00000582892	VASP	P50552	380 aa	Predicted RBP	12	□□□□□ -0.49
NF1-222	ENST00000582892	PLXNC1	O60486	1568 aa		12	□□□□□ -0.49
NF1-222	ENST00000582892	A2ML1	A8K2U0	1454 aa		11.99	□□□□□ -0.49
NF1-222	ENST00000582892	SYCP2	Q9BX26	1530 aa		11.98	□□□□□ -0.49
NF1-222	ENST00000582892	CREBZF	Q9NS37	354 aa		11.98	□□□□□ -0.49
NF1-222	ENST00000582892	INO80	Q9ULG1	1556 aa	Predicted RBP	11.96	□□□□□ -0.49
NF1-222	ENST00000582892	CHADL	Q6NUI6	762 aa		11.96	□□□□□ -0.49
NF1-222	ENST00000582892	POTEA	Q6S8J7	498 aa		11.96	□□□□□ -0.49
NF1-222	ENST00000582892	ATP7A	Q04656	1500 aa		11.96	□□□□□ -0.5
NF1-222	ENST00000582892	ARHGAP35	Q9NRY4	1499 aa		11.95	□□□□□ -0.5
NF1-222	ENST00000582892	SP7	Q8TDD2	431 aa	Predicted RBP	11.95	□□□□□ -0.5
NF1-222	ENST00000582892	CLIP1	P30622	1438 aa		11.94	□□□□□ -0.5
NF1-222	ENST00000582892	RNF17	Q9BXT8	1623 aa	Known RBP	11.94	□□□□□ -0.5
NF1-222	ENST00000582892	GGT6	Q6P531	493 aa		11.94	□□□□□ -0.5
NF1-222	ENST00000582892	XIRP1	Q702N8	1843 aa	Known RBP	11.94	□□□□□ -0.5
NF1-222	ENST00000582892	LRRC7	Q96NW7	1537 aa		11.93	□□□□□ -0.5
NF1-222	ENST00000582892	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
NF1-222	ENST00000582892	A2M	P01023	1474 aa		11.92	□□□□□ -0.5
NF1-222	ENST00000582892	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.92	□□□□□ -0.5
NF1-222	ENST00000582892	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.92	□□□□□ -0.5
NF1-222	ENST00000582892	FMN1	Q68DA7	1419 aa		11.92	□□□□□ -0.5
NF1-222	ENST00000582892	IQGAP1	P46940	1657 aa		11.91	□□□□□ -0.5
NF1-222	ENST00000582892	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
NF1-222	ENST00000582892	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.91	□□□□□ -0.5
NF1-222	ENST00000582892	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.91	□□□□□ -0.5
NF1-222	ENST00000582892	SPAG9	O60271	1321 aa	Known RBP	11.9	□□□□□ -0.5
NF1-222	ENST00000582892	SYNM	O15061	1565 aa		11.89	□□□□□ -0.51
NF1-222	ENST00000582892	NPHP4	O75161	1426 aa	Predicted RBP	11.89	□□□□□ -0.51
NF1-222	ENST00000582892	ADGB	Q8N7X0	1667 aa		11.89	□□□□□ -0.51
NF1-222	ENST00000582892	DEPDC5	O75140	1603 aa		11.89	□□□□□ -0.51
NF1-222	ENST00000582892	TNR	Q92752	1358 aa		11.88	□□□□□ -0.51
NF1-222	ENST00000582892	ZC3H13	Q5T200	1668 aa	Known RBP	11.87	□□□□□ -0.51
NF1-222	ENST00000582892	KLHL34	Q8N239	644 aa		11.87	□□□□□ -0.51
NF1-222	ENST00000582892	MED14	O60244	1454 aa		11.87	□□□□□ -0.51
NF1-222	ENST00000582892	UGGT1	Q9NYU2	1555 aa		11.85	□□□□□ -0.51
NF1-222	ENST00000582892	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.85	□□□□□ -0.51
NF1-222	ENST00000582892	ANKLE2	Q86XL3	938 aa		11.84	□□□□□ -0.51
NF1-222	ENST00000582892	EEA1	Q15075	1411 aa		11.84	□□□□□ -0.51
NF1-222	ENST00000582892	PZP	P20742	1482 aa		11.83	□□□□□ -0.52
NF1-222	ENST00000582892	MNX1	P50219	401 aa	Predicted RBP	11.82	□□□□□ -0.52
NF1-222	ENST00000582892	ROBO1	Q9Y6N7	1651 aa		11.81	□□□□□ -0.52
NF1-222	ENST00000582892	KDM5D	Q9BY66	1539 aa		11.81	□□□□□ -0.52
NF1-222	ENST00000582892	CFAP65	Q6ZU64	1925 aa	Known RBP	11.8	□□□□□ -0.52
NF1-222	ENST00000582892	CCDC18	Q5T9S5	1454 aa		11.8	□□□□□ -0.52
NF1-222	ENST00000582892	FAM135A	Q9P2D6	1515 aa		11.8	□□□□□ -0.52
NF1-222	ENST00000582892	MIA2	Q96PC5	1412 aa		11.79	□□□□□ -0.52
NF1-222	ENST00000582892	HAX1	O00165	279 aa		11.79	□□□□□ -0.52
NF1-222	ENST00000582892	PAK3	O75914	559 aa	Predicted RBP	11.79	□□□□□ -0.52
NF1-222	ENST00000582892	UBTF	P17480	764 aa	Known RBP	11.79	□□□□□ -0.52
NF1-222	ENST00000582892	ZNF644	Q9H582	1327 aa	Predicted RBP	11.79	□□□□□ -0.52
NF1-222	ENST00000582892	CASKIN1	Q8WXD9	1431 aa		11.78	□□□□□ -0.52
NF1-222	ENST00000582892	NLRP1	Q9C000	1473 aa		11.78	□□□□□ -0.52
NF1-222	ENST00000582892	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.78	□□□□□ -0.52
NF1-222	ENST00000582892	KIAA1107	Q9UPP5	1409 aa		11.77	□□□□□ -0.52
NF1-222	ENST00000582892	UBR1	Q8IWV7	1749 aa		11.77	□□□□□ -0.52

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