RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 EN1Q05925 392 aaPredicted RBP10.68□□□□□ -0.7
SMCHD1-204ENST00000581226 NUTM2FA1L443 756 aa10.67□□□□□ -0.7
SMCHD1-204ENST00000581226 MAP3K7O43318 606 aa10.67□□□□□ -0.7
SMCHD1-204ENST00000581226 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
SMCHD1-204ENST00000581226 TPRNQ4KMQ1 711 aa10.65□□□□□ -0.7
SMCHD1-204ENST00000581226 GPIHBP1Q8IV16 184 aa10.65□□□□□ -0.7
SMCHD1-204ENST00000581226 ADAM33Q9BZ11 813 aa10.65□□□□□ -0.7
SMCHD1-204ENST00000581226 TSR1Q2NL82 804 aaKnown RBP10.63□□□□□ -0.71
SMCHD1-204ENST00000581226 C6orf132Q5T0Z8 1188 aa10.62□□□□□ -0.71
SMCHD1-204ENST00000581226 ZC3H15Q8WU90 426 aaKnown RBP10.61□□□□□ -0.71
SMCHD1-204ENST00000581226 BCL2L12Q9HB09 334 aa10.61□□□□□ -0.71
SMCHD1-204ENST00000581226 CDHR5Q9HBB8 845 aa10.6□□□□□ -0.71
SMCHD1-204ENST00000581226 PTPREP23469 700 aa10.59□□□□□ -0.71
SMCHD1-204ENST00000581226 FCHSD2O94868 740 aa10.58□□□□□ -0.72
SMCHD1-204ENST00000581226 PRKCSHP14314 528 aaPredicted RBP10.58□□□□□ -0.72
SMCHD1-204ENST00000581226 PTGDRQ13258 359 aa10.57□□□□□ -0.72
SMCHD1-204ENST00000581226 ZNF687Q8N1G0 1237 aa10.56□□□□□ -0.72
SMCHD1-204ENST00000581226 KCNH8Q96L42 1107 aa10.56□□□□□ -0.72
SMCHD1-204ENST00000581226 KCNK17Q96T54 332 aa10.56□□□□□ -0.72
SMCHD1-204ENST00000581226 NPDC1Q9NQX5 325 aaPredicted RBP10.56□□□□□ -0.72
SMCHD1-204ENST00000581226 GPR37O15354 613 aa10.55□□□□□ -0.72
SMCHD1-204ENST00000581226 RNF166Q96A37 237 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-204ENST00000581226 ARHGAP33O14559 1287 aa10.54□□□□□ -0.72
SMCHD1-204ENST00000581226 ZMYND10O75800 440 aa10.54□□□□□ -0.72
SMCHD1-204ENST00000581226 COL9A1P20849 921 aa10.54□□□□□ -0.72
SMCHD1-204ENST00000581226 CERKQ8TCT0 537 aa10.54□□□□□ -0.72
SMCHD1-204ENST00000581226 PSEN2P49810 448 aa10.53□□□□□ -0.72
SMCHD1-204ENST00000581226 HIC1Q14526 733 aa10.53□□□□□ -0.72
SMCHD1-204ENST00000581226 AXIN2Q9Y2T1 843 aa10.53□□□□□ -0.72
SMCHD1-204ENST00000581226 PPP1R3GB7ZBB8 358 aa10.52□□□□□ -0.73
SMCHD1-204ENST00000581226 GNPATO15228 680 aa10.52□□□□□ -0.73
SMCHD1-204ENST00000581226 PBX2P40425 430 aa10.52□□□□□ -0.73
SMCHD1-204ENST00000581226 POTEEQ6S8J3 1075 aa10.51□□□□□ -0.73
SMCHD1-204ENST00000581226 BARGINQ6ZT62 677 aa10.5□□□□□ -0.73
SMCHD1-204ENST00000581226 KRI1Q8N9T8 703 aaKnown RBP10.5□□□□□ -0.73
SMCHD1-204ENST00000581226 MYT1LQ9UL68 1186 aa10.49□□□□□ -0.73
SMCHD1-204ENST00000581226 FECHP22830 423 aa10.48□□□□□ -0.73
SMCHD1-204ENST00000581226 PRSS12P56730 875 aa10.48□□□□□ -0.73
SMCHD1-204ENST00000581226 CDCA7LQ96GN5 454 aa10.48□□□□□ -0.73
SMCHD1-204ENST00000581226 DMRTA1Q5VZB9 504 aa10.47□□□□□ -0.73
SMCHD1-204ENST00000581226 PADI6Q6TGC4 694 aa10.46□□□□□ -0.73
SMCHD1-204ENST00000581226 SLC24A3Q9HC58 644 aa10.45□□□□□ -0.74
SMCHD1-204ENST00000581226 RBM27Q9P2N5 1060 aaKnown RBP10.45□□□□□ -0.74
SMCHD1-204ENST00000581226 MAP2K5Q13163 448 aa10.44□□□□□ -0.74
SMCHD1-204ENST00000581226 PROX2Q3B8N5 592 aa10.44□□□□□ -0.74
SMCHD1-204ENST00000581226 ZBED2Q9BTP6 218 aa10.44□□□□□ -0.74
SMCHD1-204ENST00000581226 MINK1Q8N4C8 1332 aaPredicted RBP10.43□□□□□ -0.74
SMCHD1-204ENST00000581226 TRIM6-TRIM34B2RNG4 842 aa10.42□□□□□ -0.74
SMCHD1-204ENST00000581226 IRF6O14896 467 aa10.42□□□□□ -0.74
SMCHD1-204ENST00000581226 TTC13Q8NBP0 860 aa10.42□□□□□ -0.74
SMCHD1-204ENST00000581226 TSKSQ9UJT2 592 aa10.42□□□□□ -0.74
SMCHD1-204ENST00000581226 LSM11P83369 360 aaKnown RBP eCLIP10.41□□□□□ -0.748e-8■■■■■ 38.9
SMCHD1-204ENST00000581226 PACS2Q86VP3 889 aa10.41□□□□□ -0.74
SMCHD1-204ENST00000581226 SLC4A5Q9BY07 1137 aa10.41□□□□□ -0.74
SMCHD1-204ENST00000581226 FAM198AQ9UFP1 575 aa10.41□□□□□ -0.74
SMCHD1-204ENST00000581226 ONECUT3O60422 494 aaPredicted RBP10.4□□□□□ -0.74
SMCHD1-204ENST00000581226 ANKRD13DQ6ZTN6 518 aa10.4□□□□□ -0.74
SMCHD1-204ENST00000581226 AK7Q96M32 723 aa10.4□□□□□ -0.74
SMCHD1-204ENST00000581226 FAM161AQ3B820 660 aa10.39□□□□□ -0.75
SMCHD1-204ENST00000581226 CCDC102AQ96A19 550 aa10.39□□□□□ -0.75
SMCHD1-204ENST00000581226 KIAA1468Q9P260 1216 aa10.39□□□□□ -0.75
SMCHD1-204ENST00000581226 VPS9D1Q9Y2B5 631 aa10.39□□□□□ -0.75
SMCHD1-204ENST00000581226 ADGRG1Q9Y653 693 aa10.38□□□□□ -0.75
SMCHD1-204ENST00000581226 TK2O00142 265 aa10.37□□□□□ -0.75
SMCHD1-204ENST00000581226 ADGRD1Q6QNK2 874 aa10.37□□□□□ -0.75
SMCHD1-204ENST00000581226 RABGEF1Q9UJ41 708 aa10.37□□□□□ -0.75
SMCHD1-204ENST00000581226 NBPF26B4DH59 902 aa10.36□□□□□ -0.75
SMCHD1-204ENST00000581226 OATP04181 439 aa10.36□□□□□ -0.75
SMCHD1-204ENST00000581226 NUDT18Q6ZVK8 323 aa10.36□□□□□ -0.75
SMCHD1-204ENST00000581226 TATDN2Q93075 761 aa10.36□□□□□ -0.75
SMCHD1-204ENST00000581226 PNMA3Q9UL41 463 aa10.36□□□□□ -0.75
SMCHD1-204ENST00000581226 C3orf80F5H4A9 247 aa10.34□□□□□ -0.75
SMCHD1-204ENST00000581226 SMAPO00193 183 aa10.34□□□□□ -0.75
SMCHD1-204ENST00000581226 RBM46Q8TBY0 533 aaKnown RBP10.34□□□□□ -0.75
SMCHD1-204ENST00000581226 TRIM66O15016 1216 aa10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 METTL3Q86U44 580 aaKnown RBP10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 PXYLP1Q8TE99 480 aa10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 STAC3Q96MF2 364 aa10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 EYA1Q99502 592 aa10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 NBPF3Q9H094 633 aa10.32□□□□□ -0.76
SMCHD1-204ENST00000581226 BHMG1C9JSJ3 638 aaPredicted RBP10.31□□□□□ -0.76
SMCHD1-204ENST00000581226 SEPT9Q9UHD8 586 aaPredicted RBP10.31□□□□□ -0.76
SMCHD1-204ENST00000581226 PHOX2BQ99453 314 aa10.3□□□□□ -0.76
SMCHD1-204ENST00000581226 HRO43593 1189 aa10.29□□□□□ -0.76
SMCHD1-204ENST00000581226 MRPL50Q8N5N7 158 aaKnown RBP10.29□□□□□ -0.76
SMCHD1-204ENST00000581226 RCCD1A6NED2 376 aa10.28□□□□□ -0.76
SMCHD1-204ENST00000581226 PDE4DQ08499 809 aa10.27□□□□□ -0.77
SMCHD1-204ENST00000581226 FAM98CQ17RN3 349 aaKnown RBP10.27□□□□□ -0.77
SMCHD1-204ENST00000581226 NLRP7Q8WX94 980 aa10.27□□□□□ -0.77
SMCHD1-204ENST00000581226 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.26□□□□□ -0.77
SMCHD1-204ENST00000581226 DNAJB2P25686 324 aa10.26□□□□□ -0.77
SMCHD1-204ENST00000581226 LAPTM4BQ86VI4 370 aa10.26□□□□□ -0.77
SMCHD1-204ENST00000581226 MDM2Q00987 491 aaPredicted RBP10.25□□□□□ -0.77
SMCHD1-204ENST00000581226 AMHR2Q16671 573 aa10.25□□□□□ -0.77
SMCHD1-204ENST00000581226 GOLGA8CPA6NN73 597 aa10.24□□□□□ -0.77
SMCHD1-204ENST00000581226 TTLL12Q14166 644 aaPredicted RBP10.24□□□□□ -0.77
SMCHD1-204ENST00000581226 CLCN1P35523 988 aa10.23□□□□□ -0.77
SMCHD1-204ENST00000581226 HDGFP51858 240 aaKnown RBP10.23□□□□□ -0.77
SMCHD1-204ENST00000581226 NEUROD2Q15784 382 aa10.23□□□□□ -0.77
SMCHD1-204ENST00000581226 ZFRQ96KR1 1074 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms