RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 CEP162Q5TB80 1403 aa21.51■■□□□ 1.03
COPS3-214ENST00000577246 CPS1P31327 1500 aa21.5■■□□□ 1.03
COPS3-214ENST00000577246 RSPH4AQ5TD94 716 aa21.5■■□□□ 1.03
COPS3-214ENST00000577246 KIF3BO15066 747 aa21.49■■□□□ 1.03
COPS3-214ENST00000577246 TOM1O60784 492 aa21.49■■□□□ 1.03
COPS3-214ENST00000577246 KDM5DQ9BY66 1539 aa21.49■■□□□ 1.03
COPS3-214ENST00000577246 PZPP20742 1482 aa21.48■■□□□ 1.03
COPS3-214ENST00000577246 SCAF1Q9H7N4 1312 aaKnown RBP21.48■■□□□ 1.03
COPS3-214ENST00000577246 CCDC141Q6ZP82 1450 aa21.47■■□□□ 1.03
COPS3-214ENST00000577246 WASHC2CQ9Y4E1 1318 aa21.47■■□□□ 1.03
COPS3-214ENST00000577246 ANKLE2Q86XL3 938 aa21.46■■□□□ 1.03
COPS3-214ENST00000577246 THEMISQ8N1K5 641 aaPredicted RBP21.45■■□□□ 1.02
COPS3-214ENST00000577246 SHANK2Q9UPX8 1470 aa21.45■■□□□ 1.02
COPS3-214ENST00000577246 NLRP1Q9C000 1473 aa21.44■■□□□ 1.02
COPS3-214ENST00000577246 PIP4K2BP78356 416 aa21.43■■□□□ 1.02
COPS3-214ENST00000577246 FBXO31Q5XUX0 539 aaPredicted RBP21.43■■□□□ 1.02
COPS3-214ENST00000577246 POLR1AO95602 1720 aaPredicted RBP21.43■■□□□ 1.02
COPS3-214ENST00000577246 NEURL4Q96JN8 1562 aa21.42■■□□□ 1.02
COPS3-214ENST00000577246 MIA2Q96PC5 1412 aa21.41■■□□□ 1.02
COPS3-214ENST00000577246 HSPA1LP34931 641 aa21.41■■□□□ 1.02
COPS3-214ENST00000577246 CAMSAP2Q08AD1 1489 aa21.4■■□□□ 1.02
COPS3-214ENST00000577246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.39■■□□□ 1.02
COPS3-214ENST00000577246 TSPY4P0CV99 314 aa21.39■■□□□ 1.01
COPS3-214ENST00000577246 TSPY10P0CW01 314 aa21.39■■□□□ 1.01
COPS3-214ENST00000577246 UGGT1Q9NYU2 1555 aa21.38■■□□□ 1.01
COPS3-214ENST00000577246 NCOA2Q15596 1464 aa21.38■■□□□ 1.01
COPS3-214ENST00000577246 MED14O60244 1454 aa21.37■■□□□ 1.01
COPS3-214ENST00000577246 NPHP4O75161 1426 aaPredicted RBP21.37■■□□□ 1.01
COPS3-214ENST00000577246 MED1Q15648 1581 aaPredicted RBP21.36■■□□□ 1.01
COPS3-214ENST00000577246 DEPDC5O75140 1603 aa21.35■■□□□ 1.01
COPS3-214ENST00000577246 ARHGEF5Q12774 1597 aa21.34■■□□□ 1.01
COPS3-214ENST00000577246 VWDEQ8N2E2 1590 aa21.34■■□□□ 1.01
COPS3-214ENST00000577246 PHF23Q9BUL5 403 aaPredicted RBP21.31■■□□□ 1
COPS3-214ENST00000577246 ZC3H13Q5T200 1668 aaKnown RBP21.28■■□□□ 1
COPS3-214ENST00000577246 IQGAP1P46940 1657 aa21.28■■□□□ 1
COPS3-214ENST00000577246 RNF17Q9BXT8 1623 aaKnown RBP21.27■■□□□ 1
COPS3-214ENST00000577246 ABCC3O15438 1527 aa21.26■□□□□ 0.99
COPS3-214ENST00000577246 SYNMO15061 1565 aa21.24■□□□□ 0.99
COPS3-214ENST00000577246 ERVK-7P63135 1459 aa21.24■□□□□ 0.99
COPS3-214ENST00000577246 MAST1Q9Y2H9 1570 aa21.23■□□□□ 0.99
COPS3-214ENST00000577246 EIF2AK4Q9P2K8 1649 aaKnown RBP21.23■□□□□ 0.99
COPS3-214ENST00000577246 LRRC7Q96NW7 1537 aa21.22■□□□□ 0.99
COPS3-214ENST00000577246 ALKQ9UM73 1620 aa21.2■□□□□ 0.98
COPS3-214ENST00000577246 LRRC9Q6ZRR7 1453 aa21.2■□□□□ 0.98
COPS3-214ENST00000577246 SCAF11Q99590 1463 aaKnown RBP21.19■□□□□ 0.98
COPS3-214ENST00000577246 DUOX2Q9NRD8 1548 aa21.16■□□□□ 0.98
COPS3-214ENST00000577246 MYOM3Q5VTT5 1437 aa21.15■□□□□ 0.98
COPS3-214ENST00000577246 VPS8Q8N3P4 1428 aa21.15■□□□□ 0.98
COPS3-214ENST00000577246 EID1Q9Y6B2 187 aa21.15■□□□□ 0.98
COPS3-214ENST00000577246 MROH1Q8NDA8 1641 aa21.14■□□□□ 0.97
COPS3-214ENST00000577246 ARHGAP31Q2M1Z3 1444 aa21.13■□□□□ 0.97
COPS3-214ENST00000577246 TXNDC2Q86VQ3 553 aa21.13■□□□□ 0.97
COPS3-214ENST00000577246 SLIT1O75093 1534 aa21.13■□□□□ 0.97
COPS3-214ENST00000577246 UBR1Q8IWV7 1749 aa21.12■□□□□ 0.97
COPS3-214ENST00000577246 SENP3Q9H4L4 574 aaPredicted RBP21.12■□□□□ 0.97
COPS3-214ENST00000577246 ARHGAP23Q9P227 1491 aa21.12■□□□□ 0.97
COPS3-214ENST00000577246 STRCP1A6NGW2 1772 aa21.11■□□□□ 0.97
COPS3-214ENST00000577246 MAP3K1Q13233 1512 aa21.11■□□□□ 0.97
COPS3-214ENST00000577246 ERBINQ96RT1 1412 aa21.1■□□□□ 0.97
COPS3-214ENST00000577246 PRDM15P57071 1507 aaPredicted RBP21.09■□□□□ 0.97
COPS3-214ENST00000577246 KIF15Q9NS87 1388 aa21.09■□□□□ 0.97
COPS3-214ENST00000577246 CEP152O94986 1710 aa21.08■□□□□ 0.97
COPS3-214ENST00000577246 LTKP29376 864 aa21.08■□□□□ 0.97
COPS3-214ENST00000577246 STAG3Q9UJ98 1225 aa21.07■□□□□ 0.96
COPS3-214ENST00000577246 KANK1Q14678 1352 aa21.07■□□□□ 0.96
COPS3-214ENST00000577246 TMEM2Q9UHN6 1383 aa21.05■□□□□ 0.96
COPS3-214ENST00000577246 KANK4Q5T7N3 995 aaPredicted RBP21.04■□□□□ 0.96
COPS3-214ENST00000577246 FAM135BQ49AJ0 1406 aa21.04■□□□□ 0.96
COPS3-214ENST00000577246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.02■□□□□ 0.96
COPS3-214ENST00000577246 RRP7BPQ9NSQ0 103 aa21.02■□□□□ 0.96
COPS3-214ENST00000577246 EFCAB6Q5THR3 1501 aa20.99■□□□□ 0.95
COPS3-214ENST00000577246 ABCC5O15440 1437 aa20.99■□□□□ 0.95
COPS3-214ENST00000577246 PIK3C2BO00750 1634 aa20.99■□□□□ 0.95
COPS3-214ENST00000577246 TMEM94Q12767 1356 aa20.98■□□□□ 0.95
COPS3-214ENST00000577246 KCNA6P17658 529 aa20.98■□□□□ 0.95
COPS3-214ENST00000577246 KDM5AP29375 1690 aaKnown RBP20.98■□□□□ 0.95
COPS3-214ENST00000577246 RGS17Q9UGC6 210 aaPredicted RBP20.97■□□□□ 0.95
COPS3-214ENST00000577246 CROCC2H7BZ55 1655 aa20.96■□□□□ 0.95
COPS3-214ENST00000577246 LMTK2Q8IWU2 1503 aa20.96■□□□□ 0.95
COPS3-214ENST00000577246 APLP2Q06481 763 aa20.96■□□□□ 0.95
COPS3-214ENST00000577246 ANKRD30AQ9BXX3 1397 aa20.96■□□□□ 0.95
COPS3-214ENST00000577246 DAPK1P53355 1430 aa20.95■□□□□ 0.95
COPS3-214ENST00000577246 CFAP65Q6ZU64 1925 aaKnown RBP20.95■□□□□ 0.94
COPS3-214ENST00000577246 PTPN23Q9H3S7 1636 aa20.94■□□□□ 0.94
COPS3-214ENST00000577246 IDI1Q13907 227 aa20.94■□□□□ 0.94
COPS3-214ENST00000577246 PROSER2Q86WR7 435 aaPredicted RBP20.94■□□□□ 0.94
COPS3-214ENST00000577246 XIRP1Q702N8 1843 aaKnown RBP20.93■□□□□ 0.94
COPS3-214ENST00000577246 NKTRP30414 1462 aaKnown RBP20.93■□□□□ 0.94
COPS3-214ENST00000577246 SLC26A8Q96RN1 970 aa20.91■□□□□ 0.94
COPS3-214ENST00000577246 SLC52A1Q9NWF4 448 aa20.91■□□□□ 0.94
COPS3-214ENST00000577246 MSH6P52701 1360 aa20.9■□□□□ 0.94
COPS3-214ENST00000577246 TET3O43151 1660 aa20.89■□□□□ 0.94
COPS3-214ENST00000577246 ADGRB3O60242 1522 aa20.89■□□□□ 0.94
COPS3-214ENST00000577246 FGD6Q6ZV73 1430 aa20.89■□□□□ 0.94
COPS3-214ENST00000577246 BCANQ96GW7 911 aa20.89■□□□□ 0.93
COPS3-214ENST00000577246 NOS1P29475 1434 aa20.88■□□□□ 0.93
COPS3-214ENST00000577246 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
COPS3-214ENST00000577246 ROBO1Q9Y6N7 1651 aa20.88■□□□□ 0.93
COPS3-214ENST00000577246 HDGFP51858 240 aaKnown RBP20.87■□□□□ 0.93
COPS3-214ENST00000577246 NWD1Q149M9 1564 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms