RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 COL17A1Q9UMD9 1497 aaPredicted RBP9.7□□□□□ -0.86
VPS53-219ENST00000576019 MED1Q15648 1581 aaPredicted RBP9.7□□□□□ -0.86
VPS53-219ENST00000576019 FLIIQ13045 1269 aa9.69□□□□□ -0.86
VPS53-219ENST00000576019 PPRC1Q5VV67 1664 aaKnown RBP9.68□□□□□ -0.86
VPS53-219ENST00000576019 MROH2BQ7Z745 1585 aa9.68□□□□□ -0.86
VPS53-219ENST00000576019 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
VPS53-219ENST00000576019 SRCAPQ6ZRS2 3230 aa9.68□□□□□ -0.86
VPS53-219ENST00000576019 PTPRMP28827 1452 aa9.67□□□□□ -0.86
VPS53-219ENST00000576019 CRISPLD2Q9H0B8 497 aa9.67□□□□□ -0.86
VPS53-219ENST00000576019 CABP2Q9NPB3 220 aa9.67□□□□□ -0.86
VPS53-219ENST00000576019 CEP170Q5SW79 1584 aa9.67□□□□□ -0.86
VPS53-219ENST00000576019 CAMK2BQ13554 666 aa9.66□□□□□ -0.86
VPS53-219ENST00000576019 KIF12Q96FN5 646 aa9.66□□□□□ -0.86
VPS53-219ENST00000576019 SOX12O15370 315 aa9.65□□□□□ -0.86
VPS53-219ENST00000576019 CLUAP1Q96AJ1 413 aa9.65□□□□□ -0.86
VPS53-219ENST00000576019 DDRGK1Q96HY6 314 aa9.63□□□□□ -0.87
VPS53-219ENST00000576019 ABCC8Q09428 1581 aa9.63□□□□□ -0.87
VPS53-219ENST00000576019 GALR2O43603 387 aaPredicted RBP9.62□□□□□ -0.87
VPS53-219ENST00000576019 WDR97A6NE52 1622 aa9.61□□□□□ -0.87
VPS53-219ENST00000576019 TRAK2O60296 914 aa9.61□□□□□ -0.87
VPS53-219ENST00000576019 ONECUT3O60422 494 aaPredicted RBP9.61□□□□□ -0.87
VPS53-219ENST00000576019 IFFO2Q5TF58 517 aa9.61□□□□□ -0.87
VPS53-219ENST00000576019 MS4A3Q96HJ5 214 aa9.61□□□□□ -0.87
VPS53-219ENST00000576019 PRDM2Q13029 1718 aa9.61□□□□□ -0.87
VPS53-219ENST00000576019 SHROOM2Q13796 1616 aa9.6□□□□□ -0.87
VPS53-219ENST00000576019 GPR37O15354 613 aa9.6□□□□□ -0.87
VPS53-219ENST00000576019 MAP3K13O43283 966 aa9.6□□□□□ -0.87
VPS53-219ENST00000576019 KCTD17Q8N5Z5 321 aa9.6□□□□□ -0.87
VPS53-219ENST00000576019 DNMBPQ6XZF7 1577 aa9.59□□□□□ -0.87
VPS53-219ENST00000576019 A6NJR5 290 aa9.59□□□□□ -0.87
VPS53-219ENST00000576019 ADAMTSL3P82987 1691 aa9.58□□□□□ -0.88
VPS53-219ENST00000576019 HSPA2P54652 639 aa9.58□□□□□ -0.88
VPS53-219ENST00000576019 PARP9Q8IXQ6 854 aa9.58□□□□□ -0.88
VPS53-219ENST00000576019 CCDC102AQ96A19 550 aa9.58□□□□□ -0.88
VPS53-219ENST00000576019 TDRD9Q8NDG6 1382 aaKnown RBP9.58□□□□□ -0.88
VPS53-219ENST00000576019 IQSEC2Q5JU85 1478 aa9.58□□□□□ -0.88
VPS53-219ENST00000576019 MS4A4AQ96JQ5 239 aa9.57□□□□□ -0.88
VPS53-219ENST00000576019 POLA1P09884 1462 aaPredicted RBP9.56□□□□□ -0.88
VPS53-219ENST00000576019 IFNL1Q8IU54 200 aa9.56□□□□□ -0.88
VPS53-219ENST00000576019 DPYSL4O14531 572 aa9.55□□□□□ -0.88
VPS53-219ENST00000576019 POTEIP0CG38 1075 aa9.55□□□□□ -0.88
VPS53-219ENST00000576019 KIF21BO75037 1637 aa9.55□□□□□ -0.88
VPS53-219ENST00000576019 ADCY10Q96PN6 1610 aa9.55□□□□□ -0.88
VPS53-219ENST00000576019 GRIN2BQ13224 1484 aa9.54□□□□□ -0.88
VPS53-219ENST00000576019 DCBLD2Q96PD2 775 aa9.54□□□□□ -0.88
VPS53-219ENST00000576019 GLI2P10070 1586 aa9.54□□□□□ -0.88
VPS53-219ENST00000576019 MINK1Q8N4C8 1332 aaPredicted RBP9.54□□□□□ -0.88
VPS53-219ENST00000576019 MAP2K5Q13163 448 aa9.53□□□□□ -0.88
VPS53-219ENST00000576019 AMHR2Q16671 573 aa9.53□□□□□ -0.88
VPS53-219ENST00000576019 PPP1R15BQ5SWA1 713 aa9.52□□□□□ -0.89
VPS53-219ENST00000576019 AEBP1Q8IUX7 1158 aa9.52□□□□□ -0.89
VPS53-219ENST00000576019 TRAIPQ9BWF2 469 aa9.52□□□□□ -0.89
VPS53-219ENST00000576019 RAD21O60216 631 aa9.51□□□□□ -0.89
VPS53-219ENST00000576019 ZNF777Q9ULD5 760 aaPredicted RBP9.51□□□□□ -0.89
VPS53-219ENST00000576019 RAD54L2Q9Y4B4 1467 aa9.51□□□□□ -0.89
VPS53-219ENST00000576019 MCM6Q14566 821 aa9.5□□□□□ -0.89
VPS53-219ENST00000576019 PDIA6Q15084 440 aa9.5□□□□□ -0.89
VPS53-219ENST00000576019 GOPCQ9HD26 462 aa9.5□□□□□ -0.89
VPS53-219ENST00000576019 IRF6O14896 467 aa9.49□□□□□ -0.89
VPS53-219ENST00000576019 TIE1P35590 1138 aa9.49□□□□□ -0.89
VPS53-219ENST00000576019 TTLL12Q14166 644 aaPredicted RBP9.49□□□□□ -0.89
VPS53-219ENST00000576019 ASTLQ6HA08 431 aaPredicted RBP9.49□□□□□ -0.89
VPS53-219ENST00000576019 PCMTD1Q96MG8 357 aaPredicted RBP9.49□□□□□ -0.89
VPS53-219ENST00000576019 EMILIN3Q9NT22 766 aa9.49□□□□□ -0.89
VPS53-219ENST00000576019 TRPC6Q9Y210 931 aa9.49□□□□□ -0.89
VPS53-219ENST00000576019 NUTM2FA1L443 756 aa9.48□□□□□ -0.89
VPS53-219ENST00000576019 PROSER2Q86WR7 435 aaPredicted RBP9.48□□□□□ -0.89
VPS53-219ENST00000576019 CCDC97Q96F63 343 aaPredicted RBP9.48□□□□□ -0.89
VPS53-219ENST00000576019 LTBP4Q8N2S1 1624 aa9.48□□□□□ -0.89
VPS53-219ENST00000576019 NUP160Q12769 1436 aa9.48□□□□□ -0.89
VPS53-219ENST00000576019 SPDYE16A6NNV3 312 aaPredicted RBP9.47□□□□□ -0.89
VPS53-219ENST00000576019 ATMINO43313 823 aaPredicted RBP9.47□□□□□ -0.89
VPS53-219ENST00000576019 TEX14Q8IWB6 1497 aa9.47□□□□□ -0.89
VPS53-219ENST00000576019 BMP2KQ9NSY1 1161 aaPredicted RBP9.46□□□□□ -0.9
VPS53-219ENST00000576019 MADDQ8WXG6 1647 aa9.45□□□□□ -0.9
VPS53-219ENST00000576019 POM121Q96HA1 1249 aa9.44□□□□□ -0.9
VPS53-219ENST00000576019 SERPINA10Q9UK55 444 aa9.44□□□□□ -0.9
VPS53-219ENST00000576019 SOGA1O94964 1423 aa9.44□□□□□ -0.9
VPS53-219ENST00000576019 MAP3K4Q9Y6R4 1608 aa9.43□□□□□ -0.9
VPS53-219ENST00000576019 GRIN2AQ12879 1464 aa9.43□□□□□ -0.9
VPS53-219ENST00000576019 PRG4Q92954 1404 aaPredicted RBP9.43□□□□□ -0.9
VPS53-219ENST00000576019 FECHP22830 423 aa9.43□□□□□ -0.9
VPS53-219ENST00000576019 RGS22Q8NE09 1264 aa9.43□□□□□ -0.9
VPS53-219ENST00000576019 PTPRTO14522 1441 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 GRXCR2A6NFK2 248 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 TTLL13PA6NNM8 815 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 MS4A1P11836 297 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 TMCO4Q5TGY1 634 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 GIGYF2Q6Y7W6 1299 aaKnown RBP9.42□□□□□ -0.9
VPS53-219ENST00000576019 PELP1Q8IZL8 1130 aaKnown RBP9.42□□□□□ -0.9
VPS53-219ENST00000576019 RETREG2Q8NC44 543 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 GPHNQ9NQX3 736 aaPredicted RBP9.42□□□□□ -0.9
VPS53-219ENST00000576019 MTMR7Q9Y216 660 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 STRCQ7RTU9 1775 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 PBRM1Q86U86 1689 aa9.42□□□□□ -0.9
VPS53-219ENST00000576019 YEATS2Q9ULM3 1422 aa9.41□□□□□ -0.9
VPS53-219ENST00000576019 GNPATO15228 680 aa9.41□□□□□ -0.9
VPS53-219ENST00000576019 ATN1P54259 1190 aaPredicted RBP9.41□□□□□ -0.9
VPS53-219ENST00000576019 BCORL1Q5H9F3 1711 aa9.4□□□□□ -0.9
VPS53-219ENST00000576019 FNBP4Q8N3X1 1017 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms