RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ABCC1P33527 1531 aa12.77□□□□□ -0.37
VPS53-214ENST00000572607 LTBP4Q8N2S1 1624 aa12.76□□□□□ -0.37
VPS53-214ENST00000572607 TIAM1Q13009 1591 aa12.75□□□□□ -0.37
VPS53-214ENST00000572607 CDC42BPAQ5VT25 1732 aa12.75□□□□□ -0.37
VPS53-214ENST00000572607 PLEKHH2Q8IVE3 1493 aa12.75□□□□□ -0.37
VPS53-214ENST00000572607 ZNF692Q9BU19 519 aaPredicted RBP12.75□□□□□ -0.37
VPS53-214ENST00000572607 SSUH2Q9Y2M2 353 aa12.74□□□□□ -0.37
VPS53-214ENST00000572607 TRAPPC8Q9Y2L5 1435 aa12.73□□□□□ -0.37
VPS53-214ENST00000572607 MLH3Q9UHC1 1453 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 KIDINS220Q9ULH0 1771 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 HAX1O00165 279 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 SPDYE1Q8NFV5 336 aaPredicted RBP12.72□□□□□ -0.37
VPS53-214ENST00000572607 ITSN2Q9NZM3 1697 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 SAMD9LQ8IVG5 1584 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 NCOA2Q15596 1464 aa12.72□□□□□ -0.37
VPS53-214ENST00000572607 KIAA1107Q9UPP5 1409 aa12.71□□□□□ -0.37
VPS53-214ENST00000572607 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.37
VPS53-214ENST00000572607 SPATA31D1Q6ZQQ2 1576 aa12.71□□□□□ -0.37
VPS53-214ENST00000572607 AGLP35573 1532 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 MAP3K1Q13233 1512 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 SYCP2Q9BX26 1530 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 LRRC9Q6ZRR7 1453 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 PTPRTO14522 1441 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 UHRF1BP1Q6BDS2 1440 aa12.71□□□□□ -0.38
VPS53-214ENST00000572607 SPAG9O60271 1321 aaKnown RBP12.7□□□□□ -0.38
VPS53-214ENST00000572607 HNRNPMP52272 730 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS53-214ENST00000572607 DISP3Q9P2K9 1392 aa12.69□□□□□ -0.38
VPS53-214ENST00000572607 SOCS7O14512 581 aa12.69□□□□□ -0.38
VPS53-214ENST00000572607 CLEC11AQ9Y240 323 aa12.67□□□□□ -0.38
VPS53-214ENST00000572607 NCOA1Q15788 1441 aa12.67□□□□□ -0.38
VPS53-214ENST00000572607 ZNF644Q9H582 1327 aaPredicted RBP12.65□□□□□ -0.38
VPS53-214ENST00000572607 MROH2AA6NES4 1674 aa12.65□□□□□ -0.38
VPS53-214ENST00000572607 KANK4Q5T7N3 995 aaPredicted RBP12.65□□□□□ -0.38
VPS53-214ENST00000572607 RSPH4AQ5TD94 716 aa12.65□□□□□ -0.38
VPS53-214ENST00000572607 ESF1Q9H501 851 aaKnown RBP12.65□□□□□ -0.38
VPS53-214ENST00000572607 IQSEC2Q5JU85 1478 aa12.65□□□□□ -0.38
VPS53-214ENST00000572607 ATP7AQ04656 1500 aa12.64□□□□□ -0.39
VPS53-214ENST00000572607 CAMSAP2Q08AD1 1489 aa12.64□□□□□ -0.39
VPS53-214ENST00000572607 CAMSAP1Q5T5Y3 1602 aa12.62□□□□□ -0.39
VPS53-214ENST00000572607 ZNF142P52746 1687 aaPredicted RBP12.62□□□□□ -0.39
VPS53-214ENST00000572607 CCDC141Q6ZP82 1450 aa12.62□□□□□ -0.39
VPS53-214ENST00000572607 MBD5Q9P267 1494 aa12.62□□□□□ -0.39
VPS53-214ENST00000572607 INO80Q9ULG1 1556 aaPredicted RBP12.61□□□□□ -0.39
VPS53-214ENST00000572607 TSPY4P0CV99 314 aa12.61□□□□□ -0.39
VPS53-214ENST00000572607 TSPY10P0CW01 314 aa12.61□□□□□ -0.39
VPS53-214ENST00000572607 PRKAR2AP13861 404 aaKnown RBP12.61□□□□□ -0.39
VPS53-214ENST00000572607 MYOM3Q5VTT5 1437 aa12.61□□□□□ -0.39
VPS53-214ENST00000572607 MIA2Q96PC5 1412 aa12.61□□□□□ -0.39
VPS53-214ENST00000572607 PLXNC1O60486 1568 aa12.6□□□□□ -0.39
VPS53-214ENST00000572607 A2MP01023 1474 aa12.6□□□□□ -0.39
VPS53-214ENST00000572607 RTEL1-TNFRSF6BF6WH68 1400 aa12.6□□□□□ -0.39
VPS53-214ENST00000572607 MYO3AQ8NEV4 1616 aa12.59□□□□□ -0.39
VPS53-214ENST00000572607 CLTCQ00610 1675 aaKnown RBP12.59□□□□□ -0.39
VPS53-214ENST00000572607 NPATQ14207 1427 aa12.58□□□□□ -0.4
VPS53-214ENST00000572607 CNTLNQ9NXG0 1405 aa12.58□□□□□ -0.4
VPS53-214ENST00000572607 ARHGEF5Q12774 1597 aa12.57□□□□□ -0.4
VPS53-214ENST00000572607 EVX2Q03828 476 aa12.56□□□□□ -0.4
VPS53-214ENST00000572607 TCOF1Q13428 1488 aaKnown RBP12.56□□□□□ -0.4
VPS53-214ENST00000572607 CEP170BQ9Y4F5 1589 aaPredicted RBP12.55□□□□□ -0.4
VPS53-214ENST00000572607 ADGBQ8N7X0 1667 aa12.54□□□□□ -0.4
VPS53-214ENST00000572607 PLA2R1Q13018 1463 aa12.54□□□□□ -0.4
VPS53-214ENST00000572607 GGT6Q6P531 493 aa12.54□□□□□ -0.4
VPS53-214ENST00000572607 ZNF335Q9H4Z2 1342 aaPredicted RBP12.54□□□□□ -0.4
VPS53-214ENST00000572607 ZMYM3Q14202 1370 aa12.54□□□□□ -0.4
VPS53-214ENST00000572607 DHX29Q7Z478 1369 aaKnown RBP12.54□□□□□ -0.4
VPS53-214ENST00000572607 PTPRKQ15262 1439 aa12.54□□□□□ -0.4
VPS53-214ENST00000572607 NCKAP5LQ9HCH0 1330 aa12.53□□□□□ -0.4
VPS53-214ENST00000572607 FGD6Q6ZV73 1430 aa12.52□□□□□ -0.41
VPS53-214ENST00000572607 NEURL4Q96JN8 1562 aa12.51□□□□□ -0.41
VPS53-214ENST00000572607 PTPN23Q9H3S7 1636 aa12.51□□□□□ -0.41
VPS53-214ENST00000572607 KIF3BO15066 747 aa12.5□□□□□ -0.41
VPS53-214ENST00000572607 MAST1Q9Y2H9 1570 aa12.5□□□□□ -0.41
VPS53-214ENST00000572607 DNMT1P26358 1616 aaKnown RBP12.5□□□□□ -0.41
VPS53-214ENST00000572607 ALKQ9UM73 1620 aa12.5□□□□□ -0.41
VPS53-214ENST00000572607 POLR1AO95602 1720 aaPredicted RBP12.48□□□□□ -0.41
VPS53-214ENST00000572607 SHANK2Q9UPX8 1470 aa12.48□□□□□ -0.41
VPS53-214ENST00000572607 PRR29P0C7W0 189 aa12.48□□□□□ -0.41
VPS53-214ENST00000572607 FAM50AQ14320 339 aaKnown RBP12.47□□□□□ -0.41
VPS53-214ENST00000572607 MED1Q15648 1581 aaPredicted RBP12.47□□□□□ -0.41
VPS53-214ENST00000572607 ABCC5O15440 1437 aa12.46□□□□□ -0.41
VPS53-214ENST00000572607 DAPK1P53355 1430 aa12.46□□□□□ -0.41
VPS53-214ENST00000572607 WASHC2CQ9Y4E1 1318 aa12.46□□□□□ -0.41
VPS53-214ENST00000572607 C19orf67A6NJJ6 358 aa12.46□□□□□ -0.41
VPS53-214ENST00000572607 UBAP1LF5GYI3 381 aa12.45□□□□□ -0.42
VPS53-214ENST00000572607 FAM135AQ9P2D6 1515 aa12.45□□□□□ -0.42
VPS53-214ENST00000572607 A2ML1A8K2U0 1454 aa12.45□□□□□ -0.42
VPS53-214ENST00000572607 KIF15Q9NS87 1388 aa12.44□□□□□ -0.42
VPS53-214ENST00000572607 KDM5DQ9BY66 1539 aa12.44□□□□□ -0.42
VPS53-214ENST00000572607 DUOX2Q9NRD8 1548 aa12.44□□□□□ -0.42
VPS53-214ENST00000572607 PKD2Q13563 968 aa12.44□□□□□ -0.42
VPS53-214ENST00000572607 ANKRD30AQ9BXX3 1397 aa12.43□□□□□ -0.42
VPS53-214ENST00000572607 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
VPS53-214ENST00000572607 STRCP1A6NGW2 1772 aa12.43□□□□□ -0.42
VPS53-214ENST00000572607 CHADLQ6NUI6 762 aa12.43□□□□□ -0.42
VPS53-214ENST00000572607 RRP7BPQ9NSQ0 103 aa12.43□□□□□ -0.42
VPS53-214ENST00000572607 CROCC2H7BZ55 1655 aa12.42□□□□□ -0.42
VPS53-214ENST00000572607 EIF2AK4Q9P2K8 1649 aaKnown RBP12.42□□□□□ -0.42
VPS53-214ENST00000572607 CHIC2Q9UKJ5 165 aa12.42□□□□□ -0.42
VPS53-214ENST00000572607 ERBINQ96RT1 1412 aa12.42□□□□□ -0.42
VPS53-214ENST00000572607 HSPA1LP34931 641 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms