RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 PLEKHH2Q8IVE3 1493 aa21.64■■□□□ 1.06
CCDC40-208ENST00000572270 NPHP4O75161 1426 aaPredicted RBP21.63■■□□□ 1.05
CCDC40-208ENST00000572270 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.63■■□□□ 1.05
CCDC40-208ENST00000572270 DEPDC5O75140 1603 aa21.63■■□□□ 1.05
CCDC40-208ENST00000572270 SYNMO15061 1565 aa21.63■■□□□ 1.05
CCDC40-208ENST00000572270 KIAA1107Q9UPP5 1409 aa21.63■■□□□ 1.05
CCDC40-208ENST00000572270 IQGAP1P46940 1657 aa21.62■■□□□ 1.05
CCDC40-208ENST00000572270 MED14O60244 1454 aa21.61■■□□□ 1.05
CCDC40-208ENST00000572270 THEMISQ8N1K5 641 aaPredicted RBP21.61■■□□□ 1.05
CCDC40-208ENST00000572270 CASKIN1Q8WXD9 1431 aa21.6■■□□□ 1.05
CCDC40-208ENST00000572270 GPATCH8Q9UKJ3 1502 aaKnown RBP21.6■■□□□ 1.05
CCDC40-208ENST00000572270 LRRC7Q96NW7 1537 aa21.59■■□□□ 1.05
CCDC40-208ENST00000572270 FAM135AQ9P2D6 1515 aa21.59■■□□□ 1.05
CCDC40-208ENST00000572270 PZPP20742 1482 aa21.58■■□□□ 1.05
CCDC40-208ENST00000572270 UGGT1Q9NYU2 1555 aa21.58■■□□□ 1.05
CCDC40-208ENST00000572270 STRCP1A6NGW2 1772 aa21.57■■□□□ 1.04
CCDC40-208ENST00000572270 FBXO31Q5XUX0 539 aaPredicted RBP21.57■■□□□ 1.04
CCDC40-208ENST00000572270 NLRP1Q9C000 1473 aa21.57■■□□□ 1.04
CCDC40-208ENST00000572270 KDM5DQ9BY66 1539 aa21.55■■□□□ 1.04
CCDC40-208ENST00000572270 CFDP1Q9UEE9 299 aaPredicted RBP21.55■■□□□ 1.04
CCDC40-208ENST00000572270 POTEAQ6S8J7 498 aa21.52■■□□□ 1.04
CCDC40-208ENST00000572270 MIA2Q96PC5 1412 aa21.51■■□□□ 1.03
CCDC40-208ENST00000572270 CCNB3Q8WWL7 1395 aa21.5■■□□□ 1.03
CCDC40-208ENST00000572270 DHX29Q7Z478 1369 aaKnown RBP21.49■■□□□ 1.03
CCDC40-208ENST00000572270 FYCO1Q9BQS8 1478 aa21.49■■□□□ 1.03
CCDC40-208ENST00000572270 SETD1AO15047 1707 aaKnown RBP21.48■■□□□ 1.03
CCDC40-208ENST00000572270 WASHC2CQ9Y4E1 1318 aa21.48■■□□□ 1.03
CCDC40-208ENST00000572270 KIF3BO15066 747 aa21.47■■□□□ 1.03
CCDC40-208ENST00000572270 RTEL1-TNFRSF6BF6WH68 1400 aa21.46■■□□□ 1.03
CCDC40-208ENST00000572270 ZC3H13Q5T200 1668 aaKnown RBP21.43■■□□□ 1.02
CCDC40-208ENST00000572270 FAM135BQ49AJ0 1406 aa21.4■■□□□ 1.02
CCDC40-208ENST00000572270 XIRP1Q702N8 1843 aaKnown RBP21.4■■□□□ 1.02
CCDC40-208ENST00000572270 MBD5Q9P267 1494 aa21.39■■□□□ 1.01
CCDC40-208ENST00000572270 ZNF644Q9H582 1327 aaPredicted RBP21.36■■□□□ 1.01
CCDC40-208ENST00000572270 SCAF11Q99590 1463 aaKnown RBP21.36■■□□□ 1.01
CCDC40-208ENST00000572270 MTUS2Q5JR59 1369 aa21.36■■□□□ 1.01
CCDC40-208ENST00000572270 TIAM1Q13009 1591 aa21.35■■□□□ 1.01
CCDC40-208ENST00000572270 ROBO1Q9Y6N7 1651 aa21.34■■□□□ 1.01
CCDC40-208ENST00000572270 CCDC141Q6ZP82 1450 aa21.32■■□□□ 1
CCDC40-208ENST00000572270 UBR1Q8IWV7 1749 aa21.32■■□□□ 1
CCDC40-208ENST00000572270 CHIC1Q5VXU3 224 aa21.31■■□□□ 1
CCDC40-208ENST00000572270 ERVK-7P63135 1459 aa21.3■■□□□ 1
CCDC40-208ENST00000572270 LRRC9Q6ZRR7 1453 aa21.28■■□□□ 1
CCDC40-208ENST00000572270 UPF1Q92900 1129 aaKnown RBP eCLIP21.28■■□□□ 1
CCDC40-208ENST00000572270 ABCC3O15438 1527 aa21.27■■□□□ 1
CCDC40-208ENST00000572270 TXNDC2Q86VQ3 553 aa21.26■□□□□ 0.99
CCDC40-208ENST00000572270 SLIT1O75093 1534 aa21.25■□□□□ 0.99
CCDC40-208ENST00000572270 EID1Q9Y6B2 187 aa21.25■□□□□ 0.99
CCDC40-208ENST00000572270 EHBP1L1Q8N3D4 1523 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 TMEM94Q12767 1356 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 PHLPP1O60346 1717 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 LTKP29376 864 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 RSPH4AQ5TD94 716 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 ARHGAP23Q9P227 1491 aa21.24■□□□□ 0.99
CCDC40-208ENST00000572270 JCADQ9P266 1359 aa21.23■□□□□ 0.99
CCDC40-208ENST00000572270 NCOA2Q15596 1464 aa21.23■□□□□ 0.99
CCDC40-208ENST00000572270 CFAP65Q6ZU64 1925 aaKnown RBP21.21■□□□□ 0.99
CCDC40-208ENST00000572270 CAMSAP2Q08AD1 1489 aa21.21■□□□□ 0.99
CCDC40-208ENST00000572270 TRIM52Q96A61 297 aa21.2■□□□□ 0.98
CCDC40-208ENST00000572270 MAP3K1Q13233 1512 aa21.19■□□□□ 0.98
CCDC40-208ENST00000572270 CEP152O94986 1710 aa21.19■□□□□ 0.98
CCDC40-208ENST00000572270 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
CCDC40-208ENST00000572270 TSPY4P0CV99 314 aa21.18■□□□□ 0.98
CCDC40-208ENST00000572270 TSPY10P0CW01 314 aa21.18■□□□□ 0.98
CCDC40-208ENST00000572270 ZNF772Q68DY9 489 aaPredicted RBP21.18■□□□□ 0.98
CCDC40-208ENST00000572270 EIF2AK4Q9P2K8 1649 aaKnown RBP21.18■□□□□ 0.98
CCDC40-208ENST00000572270 MEX3CQ5U5Q3 659 aaKnown RBP21.17■□□□□ 0.98
CCDC40-208ENST00000572270 PROSER2Q86WR7 435 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-208ENST00000572270 ARHGEF5Q12774 1597 aa21.15■□□□□ 0.98
CCDC40-208ENST00000572270 MSH6P52701 1360 aa21.15■□□□□ 0.98
CCDC40-208ENST00000572270 KCNA6P17658 529 aa21.15■□□□□ 0.98
CCDC40-208ENST00000572270 PRDM15P57071 1507 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-208ENST00000572270 NKTRP30414 1462 aaKnown RBP21.13■□□□□ 0.97
CCDC40-208ENST00000572270 MROH1Q8NDA8 1641 aa21.12■□□□□ 0.97
CCDC40-208ENST00000572270 RBM33Q96EV2 1170 aaKnown RBP21.12■□□□□ 0.97
CCDC40-208ENST00000572270 TMEM2Q9UHN6 1383 aa21.11■□□□□ 0.97
CCDC40-208ENST00000572270 SPATA31A6Q5VVP1 1343 aa21.11■□□□□ 0.97
CCDC40-208ENST00000572270 STAG3Q9UJ98 1225 aa21.11■□□□□ 0.97
CCDC40-208ENST00000572270 PIK3C2BO00750 1634 aa21.11■□□□□ 0.97
CCDC40-208ENST00000572270 LRP6O75581 1613 aa21.11■□□□□ 0.97
CCDC40-208ENST00000572270 COL16A1Q07092 1604 aaPredicted RBP21.11■□□□□ 0.97
CCDC40-208ENST00000572270 SLAIN2Q9P270 581 aa21.1■□□□□ 0.97
CCDC40-208ENST00000572270 RXRBP28702 533 aa21.08■□□□□ 0.97
CCDC40-208ENST00000572270 NWD1Q149M9 1564 aa21.08■□□□□ 0.97
CCDC40-208ENST00000572270 FGD6Q6ZV73 1430 aa21.08■□□□□ 0.97
CCDC40-208ENST00000572270 SRCAPQ6ZRS2 3230 aa21.07■□□□□ 0.96
CCDC40-208ENST00000572270 MAST1Q9Y2H9 1570 aa21.07■□□□□ 0.96
CCDC40-208ENST00000572270 SLC26A8Q96RN1 970 aa21.06■□□□□ 0.96
CCDC40-208ENST00000572270 CDK12Q9NYV4 1490 aaPredicted RBP21.06■□□□□ 0.96
CCDC40-208ENST00000572270 KDM5AP29375 1690 aaKnown RBP21.05■□□□□ 0.96
CCDC40-208ENST00000572270 ARHGAP31Q2M1Z3 1444 aa21.05■□□□□ 0.96
CCDC40-208ENST00000572270 EFCAB6Q5THR3 1501 aa21.05■□□□□ 0.96
CCDC40-208ENST00000572270 TET3O43151 1660 aa21.04■□□□□ 0.96
CCDC40-208ENST00000572270 SHPRHQ149N8 1683 aa21.04■□□□□ 0.96
CCDC40-208ENST00000572270 BCANQ96GW7 911 aa21■□□□□ 0.95
CCDC40-208ENST00000572270 DUOX2Q9NRD8 1548 aa20.99■□□□□ 0.95
CCDC40-208ENST00000572270 AHDC1Q5TGY3 1603 aaPredicted RBP20.97■□□□□ 0.95
CCDC40-208ENST00000572270 CHD2O14647 1828 aaKnown RBP20.93■□□□□ 0.94
CCDC40-208ENST00000572270 NUTM2BA6NNL0 878 aaPredicted RBP20.93■□□□□ 0.94
CCDC40-208ENST00000572270 NUTM2EB1AL46 878 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms