RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
CDRT1-206ENST00000571263 MPHOSPH9Q99550 1183 aa17.5■□□□□ 0.39
CDRT1-206ENST00000571263 KDM5DQ9BY66 1539 aa17.5■□□□□ 0.39
CDRT1-206ENST00000571263 UNC13BO14795 1591 aa17.49■□□□□ 0.39
CDRT1-206ENST00000571263 YEATS2Q9ULM3 1422 aa17.49■□□□□ 0.39
CDRT1-206ENST00000571263 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
CDRT1-206ENST00000571263 BCORL1Q5H9F3 1711 aa17.49■□□□□ 0.39
CDRT1-206ENST00000571263 SLC4A1APQ9BWU0 796 aaKnown RBP17.48■□□□□ 0.39
CDRT1-206ENST00000571263 AGLP35573 1532 aa17.47■□□□□ 0.39
CDRT1-206ENST00000571263 ARHGEF40Q8TER5 1519 aa17.47■□□□□ 0.39
CDRT1-206ENST00000571263 DEPDC5O75140 1603 aa17.46■□□□□ 0.39
CDRT1-206ENST00000571263 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.44■□□□□ 0.38
CDRT1-206ENST00000571263 RNF17Q9BXT8 1623 aaKnown RBP17.43■□□□□ 0.38
CDRT1-206ENST00000571263 PZPP20742 1482 aa17.43■□□□□ 0.38
CDRT1-206ENST00000571263 IQGAP3Q86VI3 1631 aa17.43■□□□□ 0.38
CDRT1-206ENST00000571263 PRDM15P57071 1507 aaPredicted RBP17.42■□□□□ 0.38
CDRT1-206ENST00000571263 FAM135AQ9P2D6 1515 aa17.42■□□□□ 0.38
CDRT1-206ENST00000571263 GGT6Q6P531 493 aa17.4■□□□□ 0.38
CDRT1-206ENST00000571263 PKD2Q13563 968 aa17.39■□□□□ 0.37
CDRT1-206ENST00000571263 VWDEQ8N2E2 1590 aa17.39■□□□□ 0.37
CDRT1-206ENST00000571263 LMTK2Q8IWU2 1503 aa17.38■□□□□ 0.37
CDRT1-206ENST00000571263 WASHC2CQ9Y4E1 1318 aa17.38■□□□□ 0.37
CDRT1-206ENST00000571263 TIMELESSQ9UNS1 1208 aa17.37■□□□□ 0.37
CDRT1-206ENST00000571263 MROH1Q8NDA8 1641 aa17.36■□□□□ 0.37
CDRT1-206ENST00000571263 ZC3H13Q5T200 1668 aaKnown RBP17.35■□□□□ 0.37
CDRT1-206ENST00000571263 TET3O43151 1660 aa17.34■□□□□ 0.37
CDRT1-206ENST00000571263 ARID4BQ4LE39 1312 aaPredicted RBP17.34■□□□□ 0.37
CDRT1-206ENST00000571263 ANKRD30BQ9BXX2 1392 aa17.33■□□□□ 0.36
CDRT1-206ENST00000571263 ESF1Q9H501 851 aaKnown RBP17.33■□□□□ 0.36
CDRT1-206ENST00000571263 RPRD2Q5VT52 1461 aaKnown RBP17.32■□□□□ 0.36
CDRT1-206ENST00000571263 ARHGAP31Q2M1Z3 1444 aa17.3■□□□□ 0.36
CDRT1-206ENST00000571263 ABCC3O15438 1527 aa17.3■□□□□ 0.36
CDRT1-206ENST00000571263 CNTLNQ9NXG0 1405 aa17.29■□□□□ 0.36
CDRT1-206ENST00000571263 EFCAB6Q5THR3 1501 aa17.28■□□□□ 0.36
CDRT1-206ENST00000571263 FOXD1Q16676 465 aa17.27■□□□□ 0.36
CDRT1-206ENST00000571263 PTPRTO14522 1441 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 NEUROD1Q13562 356 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 MLECQ14165 292 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 SIN3AQ96ST3 1273 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 E9PCH4 1651 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 CAMSAP1Q5T5Y3 1602 aa17.25■□□□□ 0.35
CDRT1-206ENST00000571263 CEP152O94986 1710 aa17.24■□□□□ 0.35
CDRT1-206ENST00000571263 SIGLEC1Q9BZZ2 1709 aa17.24■□□□□ 0.35
CDRT1-206ENST00000571263 CCDC144AA2RUR9 1427 aa17.23■□□□□ 0.35
CDRT1-206ENST00000571263 TONSLQ96HA7 1378 aa17.23■□□□□ 0.35
CDRT1-206ENST00000571263 NPATQ14207 1427 aa17.21■□□□□ 0.35
CDRT1-206ENST00000571263 TRPM2O94759 1503 aa17.21■□□□□ 0.34
CDRT1-206ENST00000571263 PLA2R1Q13018 1463 aa17.19■□□□□ 0.34
CDRT1-206ENST00000571263 SPHKAPQ2M3C7 1700 aa17.19■□□□□ 0.34
CDRT1-206ENST00000571263 ZMYM3Q14202 1370 aa17.19■□□□□ 0.34
CDRT1-206ENST00000571263 SLC52A1Q9NWF4 448 aa17.19■□□□□ 0.34
CDRT1-206ENST00000571263 MROH2AA6NES4 1674 aa17.19■□□□□ 0.34
CDRT1-206ENST00000571263 CLTCQ00610 1675 aaKnown RBP17.19■□□□□ 0.34
CDRT1-206ENST00000571263 NOS1P29475 1434 aa17.18■□□□□ 0.34
CDRT1-206ENST00000571263 STAC3Q96MF2 364 aa17.17■□□□□ 0.34
CDRT1-206ENST00000571263 NEURL4Q96JN8 1562 aa17.15■□□□□ 0.34
CDRT1-206ENST00000571263 PPP1R15AO75807 674 aaPredicted RBP17.12■□□□□ 0.33
CDRT1-206ENST00000571263 PREX1Q8TCU6 1659 aa17.12■□□□□ 0.33
CDRT1-206ENST00000571263 FER1L4A9Z1Z3 1794 aa17.12■□□□□ 0.33
CDRT1-206ENST00000571263 ERVK-7P63135 1459 aa17.12■□□□□ 0.33
CDRT1-206ENST00000571263 SPATA31D1Q6ZQQ2 1576 aa17.11■□□□□ 0.33
CDRT1-206ENST00000571263 L3MBTL2Q969R5 705 aa17.1■□□□□ 0.33
CDRT1-206ENST00000571263 ADAMTSL3P82987 1691 aa17.1■□□□□ 0.33
CDRT1-206ENST00000571263 CLTCL1P53675 1640 aa17.08■□□□□ 0.32
CDRT1-206ENST00000571263 RPGRIP1LQ68CZ1 1315 aa17.08■□□□□ 0.32
CDRT1-206ENST00000571263 FBXO31Q5XUX0 539 aaPredicted RBP17.08■□□□□ 0.32
CDRT1-206ENST00000571263 KIF1BO60333 1816 aa17.07■□□□□ 0.32
CDRT1-206ENST00000571263 PIK3C2BO00750 1634 aa17.07■□□□□ 0.32
CDRT1-206ENST00000571263 SPATA31E1Q6ZUB1 1445 aa17.07■□□□□ 0.32
CDRT1-206ENST00000571263 SYNMO15061 1565 aa17.06■□□□□ 0.32
CDRT1-206ENST00000571263 TNRQ92752 1358 aa17.06■□□□□ 0.32
CDRT1-206ENST00000571263 IDI1Q13907 227 aa17.06■□□□□ 0.32
CDRT1-206ENST00000571263 CFAP65Q6ZU64 1925 aaKnown RBP17.04■□□□□ 0.32
CDRT1-206ENST00000571263 MADDQ8WXG6 1647 aa17.04■□□□□ 0.32
CDRT1-206ENST00000571263 RGL3Q3MIN7 710 aa17.04■□□□□ 0.32
CDRT1-206ENST00000571263 NLRP1Q9C000 1473 aa17.04■□□□□ 0.32
CDRT1-206ENST00000571263 C3P01024 1663 aa17.04■□□□□ 0.32
CDRT1-206ENST00000571263 CHGAP10645 457 aaKnown RBP17.03■□□□□ 0.32
CDRT1-206ENST00000571263 HDGFP51858 240 aaKnown RBP17.03■□□□□ 0.32
CDRT1-206ENST00000571263 DCAF11Q8TEB1 546 aa17.03■□□□□ 0.32
CDRT1-206ENST00000571263 STAG3Q9UJ98 1225 aa17.03■□□□□ 0.32
CDRT1-206ENST00000571263 ADGRB3O60242 1522 aa17.01■□□□□ 0.31
CDRT1-206ENST00000571263 RIMS1Q86UR5 1692 aaKnown RBP17.01■□□□□ 0.31
CDRT1-206ENST00000571263 ZNF326Q5BKZ1 582 aaKnown RBP17.01■□□□□ 0.31
CDRT1-206ENST00000571263 UHRF1BP1Q6BDS2 1440 aa17.01■□□□□ 0.31
CDRT1-206ENST00000571263 UGGT1Q9NYU2 1555 aa17.01■□□□□ 0.31
CDRT1-206ENST00000571263 CEBPAP49715 358 aaPredicted RBP17■□□□□ 0.31
CDRT1-206ENST00000571263 KDM5AP29375 1690 aaKnown RBP17■□□□□ 0.31
CDRT1-206ENST00000571263 VGFO15240 615 aaPredicted RBP16.99■□□□□ 0.31
CDRT1-206ENST00000571263 KDM2AQ9Y2K7 1162 aa16.98■□□□□ 0.31
CDRT1-206ENST00000571263 TMEM131LA2VDJ0 1609 aa16.97■□□□□ 0.31
CDRT1-206ENST00000571263 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.96■□□□□ 0.31
CDRT1-206ENST00000571263 PTPRMP28827 1452 aa16.96■□□□□ 0.31
CDRT1-206ENST00000571263 MYOM2P54296 1465 aa16.96■□□□□ 0.31
CDRT1-206ENST00000571263 ZFYVE9O95405 1425 aa16.96■□□□□ 0.3
CDRT1-206ENST00000571263 THEMISQ8N1K5 641 aaPredicted RBP16.95■□□□□ 0.3
CDRT1-206ENST00000571263 A2ML1A8K2U0 1454 aa16.93■□□□□ 0.3
CDRT1-206ENST00000571263 PRAG1Q86YV5 1406 aa16.93■□□□□ 0.3
CDRT1-206ENST00000571263 SETD1BQ9UPS6 1966 aaKnown RBP16.93■□□□□ 0.3
CDRT1-206ENST00000571263 NBPF8Q3BBV2 869 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms