RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MYO5CQ9NQX4 1742 aa12□□□□□ -0.49
CHD3-213ENST00000571249 ROBO1Q9Y6N7 1651 aa12□□□□□ -0.49
CHD3-213ENST00000571249 TNRQ92752 1358 aa11.99□□□□□ -0.49
CHD3-213ENST00000571249 PRXQ9BXM0 1461 aa11.99□□□□□ -0.49
CHD3-213ENST00000571249 SYNMO15061 1565 aa11.99□□□□□ -0.49
CHD3-213ENST00000571249 XIRP1Q702N8 1843 aaKnown RBP11.99□□□□□ -0.49
CHD3-213ENST00000571249 CDK12Q9NYV4 1490 aaPredicted RBP11.98□□□□□ -0.49
CHD3-213ENST00000571249 CSRNP3Q8WYN3 585 aa11.98□□□□□ -0.49
CHD3-213ENST00000571249 IQGAP1P46940 1657 aa11.97□□□□□ -0.49
CHD3-213ENST00000571249 KIF14Q15058 1648 aa11.97□□□□□ -0.49
CHD3-213ENST00000571249 RGS12O14924 1447 aa11.96□□□□□ -0.49
CHD3-213ENST00000571249 ITSN2Q9NZM3 1697 aa11.96□□□□□ -0.5
CHD3-213ENST00000571249 DEPDC5O75140 1603 aa11.95□□□□□ -0.5
CHD3-213ENST00000571249 FOXD1Q16676 465 aa11.94□□□□□ -0.5
CHD3-213ENST00000571249 ATP1B4Q9UN42 357 aaPredicted RBP11.94□□□□□ -0.5
CHD3-213ENST00000571249 TMEM94Q12767 1356 aa11.93□□□□□ -0.5
CHD3-213ENST00000571249 SPATA31A6Q5VVP1 1343 aa11.93□□□□□ -0.5
CHD3-213ENST00000571249 AFF2P51816 1311 aa11.92□□□□□ -0.5
CHD3-213ENST00000571249 UGGT1Q9NYU2 1555 aa11.92□□□□□ -0.5
CHD3-213ENST00000571249 PHLPP1O60346 1717 aa11.91□□□□□ -0.5
CHD3-213ENST00000571249 FAM135AQ9P2D6 1515 aa11.91□□□□□ -0.5
CHD3-213ENST00000571249 QTRT2Q9H974 415 aaKnown RBP11.91□□□□□ -0.5
CHD3-213ENST00000571249 EP400Q96L91 3159 aa11.91□□□□□ -0.5
CHD3-213ENST00000571249 SPAG9O60271 1321 aaKnown RBP11.9□□□□□ -0.5
CHD3-213ENST00000571249 YY1P25490 414 aa11.9□□□□□ -0.5
CHD3-213ENST00000571249 SLAIN2Q9P270 581 aa11.9□□□□□ -0.5
CHD3-213ENST00000571249 CDC42BPBQ9Y5S2 1711 aa11.89□□□□□ -0.51
CHD3-213ENST00000571249 SAMD9LQ8IVG5 1584 aa11.89□□□□□ -0.51
CHD3-213ENST00000571249 MIA2Q96PC5 1412 aa11.89□□□□□ -0.51
CHD3-213ENST00000571249 LTKP29376 864 aa11.89□□□□□ -0.51
CHD3-213ENST00000571249 RBM6P78332 1123 aaKnown RBP11.89□□□□□ -0.51
CHD3-213ENST00000571249 SLC4A1APQ9BWU0 796 aaKnown RBP11.89□□□□□ -0.51
CHD3-213ENST00000571249 A2MP01023 1474 aa11.89□□□□□ -0.51
CHD3-213ENST00000571249 HNRNPMP52272 730 aaKnown RBP eCLIP11.88□□□□□ -0.51
CHD3-213ENST00000571249 ATAD2Q6PL18 1390 aa11.88□□□□□ -0.51
CHD3-213ENST00000571249 ZC3H13Q5T200 1668 aaKnown RBP11.87□□□□□ -0.51
CHD3-213ENST00000571249 PROSER2Q86WR7 435 aaPredicted RBP11.87□□□□□ -0.51
CHD3-213ENST00000571249 ZNF777Q9ULD5 760 aaPredicted RBP11.87□□□□□ -0.51
CHD3-213ENST00000571249 PLXNC1O60486 1568 aa11.87□□□□□ -0.51
CHD3-213ENST00000571249 KDM5DQ9BY66 1539 aa11.86□□□□□ -0.51
CHD3-213ENST00000571249 COL16A1Q07092 1604 aaPredicted RBP11.86□□□□□ -0.51
CHD3-213ENST00000571249 CDK11AQ9UQ88 783 aaPredicted RBP11.85□□□□□ -0.51
CHD3-213ENST00000571249 NLRP1Q9C000 1473 aa11.84□□□□□ -0.51
CHD3-213ENST00000571249 SLC24A1O60721 1099 aa11.84□□□□□ -0.51
CHD3-213ENST00000571249 MAP3K1Q13233 1512 aa11.84□□□□□ -0.51
CHD3-213ENST00000571249 TROQ12816 1431 aaPredicted RBP11.84□□□□□ -0.51
CHD3-213ENST00000571249 PZPP20742 1482 aa11.83□□□□□ -0.52
CHD3-213ENST00000571249 TXNDC2Q86VQ3 553 aa11.83□□□□□ -0.52
CHD3-213ENST00000571249 FGD6Q6ZV73 1430 aa11.83□□□□□ -0.52
CHD3-213ENST00000571249 ATP7AQ04656 1500 aa11.82□□□□□ -0.52
CHD3-213ENST00000571249 C8orf37Q96NL8 207 aa11.82□□□□□ -0.52
CHD3-213ENST00000571249 LRRC9Q6ZRR7 1453 aa11.82□□□□□ -0.52
CHD3-213ENST00000571249 LRP5O75197 1615 aa11.81□□□□□ -0.52
CHD3-213ENST00000571249 PSDA5PKW4 1024 aaPredicted RBP11.8□□□□□ -0.52
CHD3-213ENST00000571249 KCNA6P17658 529 aa11.8□□□□□ -0.52
CHD3-213ENST00000571249 DEFB132Q7Z7B7 95 aa11.8□□□□□ -0.52
CHD3-213ENST00000571249 WASHC2CQ9Y4E1 1318 aa11.8□□□□□ -0.52
CHD3-213ENST00000571249 SCAF11Q99590 1463 aaKnown RBP11.79□□□□□ -0.52
CHD3-213ENST00000571249 SENP3-EIF4A1A0A087X0R7 540 aa11.79□□□□□ -0.52
CHD3-213ENST00000571249 PREX2Q70Z35 1606 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 SYCP2Q9BX26 1530 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 KIF3BO15066 747 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 HRCP23327 699 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 CCDC125Q86Z20 511 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 MSH6P52701 1360 aa11.78□□□□□ -0.52
CHD3-213ENST00000571249 NGLY1Q96IV0 654 aa11.77□□□□□ -0.53
CHD3-213ENST00000571249 SLC26A8Q96RN1 970 aa11.77□□□□□ -0.53
CHD3-213ENST00000571249 CLIP1P30622 1438 aa11.77□□□□□ -0.53
CHD3-213ENST00000571249 SHPRHQ149N8 1683 aa11.75□□□□□ -0.53
CHD3-213ENST00000571249 NCOA2Q15596 1464 aa11.74□□□□□ -0.53
CHD3-213ENST00000571249 INO80Q9ULG1 1556 aaPredicted RBP11.74□□□□□ -0.53
CHD3-213ENST00000571249 PRDM15P57071 1507 aaPredicted RBP11.73□□□□□ -0.53
CHD3-213ENST00000571249 ADAMTS2O95450 1211 aa11.72□□□□□ -0.53
CHD3-213ENST00000571249 DHX29Q7Z478 1369 aaKnown RBP11.71□□□□□ -0.53
CHD3-213ENST00000571249 EID1Q9Y6B2 187 aa11.71□□□□□ -0.53
CHD3-213ENST00000571249 CEP350Q5VT06 3117 aa11.71□□□□□ -0.53
CHD3-213ENST00000571249 TIAM1Q13009 1591 aa11.71□□□□□ -0.54
CHD3-213ENST00000571249 DIP2AQ14689 1571 aa11.71□□□□□ -0.54
CHD3-213ENST00000571249 ARHGAP23Q9P227 1491 aa11.7□□□□□ -0.54
CHD3-213ENST00000571249 CDC42BPAQ5VT25 1732 aa11.69□□□□□ -0.54
CHD3-213ENST00000571249 AHDC1Q5TGY3 1603 aaPredicted RBP11.69□□□□□ -0.54
CHD3-213ENST00000571249 USP21Q9UK80 565 aa11.69□□□□□ -0.54
CHD3-213ENST00000571249 UBR1Q8IWV7 1749 aa11.69□□□□□ -0.54
CHD3-213ENST00000571249 UTRNP46939 3433 aa11.68□□□□□ -0.54
CHD3-213ENST00000571249 NWD1Q149M9 1564 aa11.68□□□□□ -0.54
CHD3-213ENST00000571249 SLIT1O75093 1534 aa11.68□□□□□ -0.54
CHD3-213ENST00000571249 NHSL1Q5SYE7 1610 aa11.68□□□□□ -0.54
CHD3-213ENST00000571249 BRINP3Q76B58 766 aa11.67□□□□□ -0.54
CHD3-213ENST00000571249 TRPC5Q9UL62 973 aaPredicted RBP11.67□□□□□ -0.54
CHD3-213ENST00000571249 BCL9LQ86UU0 1499 aa11.67□□□□□ -0.54
CHD3-213ENST00000571249 ADGBQ8N7X0 1667 aa11.67□□□□□ -0.54
CHD3-213ENST00000571249 ZNF644Q9H582 1327 aaPredicted RBP11.66□□□□□ -0.54
CHD3-213ENST00000571249 DDX17Q92841 729 aaKnown RBP11.66□□□□□ -0.54
CHD3-213ENST00000571249 BLMP54132 1417 aaPredicted RBP11.66□□□□□ -0.54
CHD3-213ENST00000571249 KIAA1107Q9UPP5 1409 aa11.66□□□□□ -0.54
CHD3-213ENST00000571249 GPATCH8Q9UKJ3 1502 aaKnown RBP11.65□□□□□ -0.54
CHD3-213ENST00000571249 ZNF784Q8NCA9 323 aaPredicted RBP11.65□□□□□ -0.54
CHD3-213ENST00000571249 LRRIQ1Q96JM4 1722 aa11.65□□□□□ -0.54
CHD3-213ENST00000571249 ERVK-7P63135 1459 aa11.64□□□□□ -0.55
CHD3-213ENST00000571249 C1QTNF8P60827 252 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms