RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ROCK2O75116 1388 aaKnown RBP13.7□□□□□ -0.22
VPS53-206ENST00000570359 IRX6P78412 446 aaPredicted RBP13.7□□□□□ -0.22
VPS53-206ENST00000570359 OSCARQ8IYS5 282 aa13.7□□□□□ -0.22
VPS53-206ENST00000570359 NPM1P06748 294 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS53-206ENST00000570359 PRKRIP1Q9H875 184 aaPredicted RBP13.69□□□□□ -0.22
VPS53-206ENST00000570359 KIF3BO15066 747 aa13.68□□□□□ -0.22
VPS53-206ENST00000570359 SENP3Q9H4L4 574 aaPredicted RBP13.67□□□□□ -0.22
VPS53-206ENST00000570359 SPATA31E1Q6ZUB1 1445 aa13.67□□□□□ -0.22
VPS53-206ENST00000570359 SCAPERQ9BY12 1400 aa13.66□□□□□ -0.22
VPS53-206ENST00000570359 WDR7Q9Y4E6 1490 aa13.66□□□□□ -0.22
VPS53-206ENST00000570359 BCORL1Q5H9F3 1711 aa13.66□□□□□ -0.22
VPS53-206ENST00000570359 NEFLP07196 543 aa13.65□□□□□ -0.22
VPS53-206ENST00000570359 FANCAO15360 1455 aa13.65□□□□□ -0.22
VPS53-206ENST00000570359 ASXL2Q76L83 1435 aa13.65□□□□□ -0.22
VPS53-206ENST00000570359 ABCC1P33527 1531 aa13.64□□□□□ -0.23
VPS53-206ENST00000570359 UHRF1BP1LA0JNW5 1464 aa13.64□□□□□ -0.23
VPS53-206ENST00000570359 KDM5DQ9BY66 1539 aa13.63□□□□□ -0.23
VPS53-206ENST00000570359 PLA2R1Q13018 1463 aa13.63□□□□□ -0.23
VPS53-206ENST00000570359 DUOX2Q9NRD8 1548 aa13.62□□□□□ -0.23
VPS53-206ENST00000570359 CHGAP10645 457 aaKnown RBP13.62□□□□□ -0.23
VPS53-206ENST00000570359 ADGRL1O94910 1474 aa13.61□□□□□ -0.23
VPS53-206ENST00000570359 KDM5CP41229 1560 aa13.61□□□□□ -0.23
VPS53-206ENST00000570359 RALGAPBQ86X10 1494 aa13.61□□□□□ -0.23
VPS53-206ENST00000570359 MAST1Q9Y2H9 1570 aa13.59□□□□□ -0.23
VPS53-206ENST00000570359 GGT6Q6P531 493 aa13.59□□□□□ -0.23
VPS53-206ENST00000570359 PLXNC1O60486 1568 aa13.59□□□□□ -0.23
VPS53-206ENST00000570359 A2MP01023 1474 aa13.59□□□□□ -0.23
VPS53-206ENST00000570359 UNC13BO14795 1591 aa13.58□□□□□ -0.23
VPS53-206ENST00000570359 CYB5RLQ6IPT4 315 aa13.58□□□□□ -0.24
VPS53-206ENST00000570359 SALL2Q9Y467 1007 aaPredicted RBP13.58□□□□□ -0.24
VPS53-206ENST00000570359 ERBINQ96RT1 1412 aa13.57□□□□□ -0.24
VPS53-206ENST00000570359 PRAG1Q86YV5 1406 aa13.57□□□□□ -0.24
VPS53-206ENST00000570359 UHRF1BP1Q6BDS2 1440 aa13.57□□□□□ -0.24
VPS53-206ENST00000570359 ZFYVE16Q7Z3T8 1539 aa13.56□□□□□ -0.24
VPS53-206ENST00000570359 RAPGEF3O95398 923 aa13.56□□□□□ -0.24
VPS53-206ENST00000570359 IQGAP3Q86VI3 1631 aa13.55□□□□□ -0.24
VPS53-206ENST00000570359 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
VPS53-206ENST00000570359 CFAP65Q6ZU64 1925 aaKnown RBP13.55□□□□□ -0.24
VPS53-206ENST00000570359 TMC1Q8TDI8 760 aa13.55□□□□□ -0.24
VPS53-206ENST00000570359 DHX29Q7Z478 1369 aaKnown RBP13.55□□□□□ -0.24
VPS53-206ENST00000570359 ATP7AQ04656 1500 aa13.54□□□□□ -0.24
VPS53-206ENST00000570359 KANK1Q14678 1352 aa13.54□□□□□ -0.24
VPS53-206ENST00000570359 NUTM2DQ5VT03 806 aaPredicted RBP13.53□□□□□ -0.24
VPS53-206ENST00000570359 CD109Q6YHK3 1445 aa13.52□□□□□ -0.24
VPS53-206ENST00000570359 UGGT1Q9NYU2 1555 aa13.52□□□□□ -0.25
VPS53-206ENST00000570359 POLR1AO95602 1720 aaPredicted RBP13.52□□□□□ -0.25
VPS53-206ENST00000570359 DISP3Q9P2K9 1392 aa13.51□□□□□ -0.25
VPS53-206ENST00000570359 E9PCH4 1651 aa13.51□□□□□ -0.25
VPS53-206ENST00000570359 ABCA9Q8IUA7 1624 aa13.5□□□□□ -0.25
VPS53-206ENST00000570359 TRPM1Q7Z4N2 1603 aa13.5□□□□□ -0.25
VPS53-206ENST00000570359 ATP10AO60312 1499 aa13.49□□□□□ -0.25
VPS53-206ENST00000570359 PANK3Q9H999 370 aa13.48□□□□□ -0.25
VPS53-206ENST00000570359 MAGI2Q86UL8 1455 aa13.47□□□□□ -0.25
VPS53-206ENST00000570359 RTEL1-TNFRSF6BF6WH68 1400 aa13.47□□□□□ -0.25
VPS53-206ENST00000570359 CFAP70Q5T0N1 1121 aa13.47□□□□□ -0.25
VPS53-206ENST00000570359 TMF1P82094 1093 aa13.46□□□□□ -0.25
VPS53-206ENST00000570359 TESK2Q96S53 571 aa13.46□□□□□ -0.26
VPS53-206ENST00000570359 CLTCL1P53675 1640 aa13.45□□□□□ -0.26
VPS53-206ENST00000570359 INO80Q9ULG1 1556 aaPredicted RBP13.45□□□□□ -0.26
VPS53-206ENST00000570359 ADGRF5Q8IZF2 1346 aa13.44□□□□□ -0.26
VPS53-206ENST00000570359 WASHC2CQ9Y4E1 1318 aa13.44□□□□□ -0.26
VPS53-206ENST00000570359 ARID4BQ4LE39 1312 aaPredicted RBP13.43□□□□□ -0.26
VPS53-206ENST00000570359 SPHKAPQ2M3C7 1700 aa13.43□□□□□ -0.26
VPS53-206ENST00000570359 ARAP3Q8WWN8 1544 aa13.43□□□□□ -0.26
VPS53-206ENST00000570359 ZNF518AQ6AHZ1 1483 aa13.43□□□□□ -0.26
VPS53-206ENST00000570359 KIDINS220Q9ULH0 1771 aa13.43□□□□□ -0.26
VPS53-206ENST00000570359 KTN1Q86UP2 1357 aaKnown RBP13.42□□□□□ -0.26
VPS53-206ENST00000570359 ZBED9Q6R2W3 1325 aa13.42□□□□□ -0.26
VPS53-206ENST00000570359 MYBBP1AQ9BQG0 1328 aaKnown RBP13.42□□□□□ -0.26
VPS53-206ENST00000570359 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
VPS53-206ENST00000570359 CEP152O94986 1710 aa13.41□□□□□ -0.26
VPS53-206ENST00000570359 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
VPS53-206ENST00000570359 TRPM2O94759 1503 aa13.41□□□□□ -0.26
VPS53-206ENST00000570359 FAM69CQ0P6D2 419 aa13.4□□□□□ -0.26
VPS53-206ENST00000570359 TMEM132EQ6IEE7 984 aa13.4□□□□□ -0.26
VPS53-206ENST00000570359 TRAK1Q9UPV9 953 aa13.4□□□□□ -0.26
VPS53-206ENST00000570359 TET3O43151 1660 aa13.4□□□□□ -0.27
VPS53-206ENST00000570359 POGZQ7Z3K3 1410 aa13.39□□□□□ -0.27
VPS53-206ENST00000570359 PRDM15P57071 1507 aaPredicted RBP13.39□□□□□ -0.27
VPS53-206ENST00000570359 GPRASP1Q5JY77 1395 aa13.39□□□□□ -0.27
VPS53-206ENST00000570359 SAFB2Q14151 953 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS53-206ENST00000570359 COL17A1Q9UMD9 1497 aaPredicted RBP13.39□□□□□ -0.27
VPS53-206ENST00000570359 EIF2AK4Q9P2K8 1649 aaKnown RBP13.39□□□□□ -0.27
VPS53-206ENST00000570359 MLECQ14165 292 aa13.38□□□□□ -0.27
VPS53-206ENST00000570359 RALBP1Q15311 655 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 MROH1Q8NDA8 1641 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 DEPDC5O75140 1603 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 MADDQ8WXG6 1647 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 B4GALNT3Q6L9W6 998 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 KNSTRNQ9Y448 316 aa13.37□□□□□ -0.27
VPS53-206ENST00000570359 PPRC1Q5VV67 1664 aaKnown RBP13.37□□□□□ -0.27
VPS53-206ENST00000570359 PER1O15534 1290 aaPredicted RBP13.37□□□□□ -0.27
VPS53-206ENST00000570359 PTPRTO14522 1441 aa13.36□□□□□ -0.27
VPS53-206ENST00000570359 NOS1P29475 1434 aa13.36□□□□□ -0.27
VPS53-206ENST00000570359 NLRP13Q86W25 1043 aa13.35□□□□□ -0.27
VPS53-206ENST00000570359 TSPOAP1O95153 1857 aa13.35□□□□□ -0.27
VPS53-206ENST00000570359 YEATS2Q9ULM3 1422 aa13.35□□□□□ -0.27
VPS53-206ENST00000570359 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
VPS53-206ENST00000570359 NPATQ14207 1427 aa13.34□□□□□ -0.27
VPS53-206ENST00000570359 EFCAB6Q5THR3 1501 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms