RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 TNRQ92752 1358 aa19.06■□□□□ 0.64
CDH3-208ENST00000569036 SYCP2Q9BX26 1530 aa19.05■□□□□ 0.64
CDH3-208ENST00000569036 SPAG9O60271 1321 aaKnown RBP19.05■□□□□ 0.64
CDH3-208ENST00000569036 UPF1Q92900 1129 aaKnown RBP eCLIP19.02■□□□□ 0.64
CDH3-208ENST00000569036 XIRP1Q702N8 1843 aaKnown RBP19■□□□□ 0.63
CDH3-208ENST00000569036 FBXO31Q5XUX0 539 aaPredicted RBP18.99■□□□□ 0.63
CDH3-208ENST00000569036 ADGBQ8N7X0 1667 aa18.98■□□□□ 0.63
CDH3-208ENST00000569036 UGGT1Q9NYU2 1555 aa18.98■□□□□ 0.63
CDH3-208ENST00000569036 PZPP20742 1482 aa18.97■□□□□ 0.63
CDH3-208ENST00000569036 THEMISQ8N1K5 641 aaPredicted RBP18.97■□□□□ 0.63
CDH3-208ENST00000569036 FAM135AQ9P2D6 1515 aa18.96■□□□□ 0.63
CDH3-208ENST00000569036 ZC3H13Q5T200 1668 aaKnown RBP18.96■□□□□ 0.63
CDH3-208ENST00000569036 FAM135BQ49AJ0 1406 aa18.96■□□□□ 0.63
CDH3-208ENST00000569036 NLRP1Q9C000 1473 aa18.95■□□□□ 0.62
CDH3-208ENST00000569036 HNRNPMP52272 730 aaKnown RBP eCLIP18.94■□□□□ 0.62
CDH3-208ENST00000569036 ZNF777Q9ULD5 760 aaPredicted RBP18.94■□□□□ 0.62
CDH3-208ENST00000569036 ARHGAP35Q9NRY4 1499 aa18.92■□□□□ 0.62
CDH3-208ENST00000569036 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
CDH3-208ENST00000569036 MIA2Q96PC5 1412 aa18.91■□□□□ 0.62
CDH3-208ENST00000569036 KDM5DQ9BY66 1539 aa18.9■□□□□ 0.62
CDH3-208ENST00000569036 EEA1Q15075 1411 aa18.9■□□□□ 0.62
CDH3-208ENST00000569036 KIAA1107Q9UPP5 1409 aa18.89■□□□□ 0.61
CDH3-208ENST00000569036 GPATCH8Q9UKJ3 1502 aaKnown RBP18.86■□□□□ 0.61
CDH3-208ENST00000569036 PLEKHH2Q8IVE3 1493 aa18.86■□□□□ 0.61
CDH3-208ENST00000569036 CCDC18Q5T9S5 1454 aa18.85■□□□□ 0.61
CDH3-208ENST00000569036 TRIM52Q96A61 297 aa18.84■□□□□ 0.61
CDH3-208ENST00000569036 PHLPP1O60346 1717 aa18.81■□□□□ 0.6
CDH3-208ENST00000569036 DHX29Q7Z478 1369 aaKnown RBP18.81■□□□□ 0.6
CDH3-208ENST00000569036 JCADQ9P266 1359 aa18.8■□□□□ 0.6
CDH3-208ENST00000569036 SCAF11Q99590 1463 aaKnown RBP18.79■□□□□ 0.6
CDH3-208ENST00000569036 LRP6O75581 1613 aa18.78■□□□□ 0.6
CDH3-208ENST00000569036 LRRC9Q6ZRR7 1453 aa18.77■□□□□ 0.6
CDH3-208ENST00000569036 UBR1Q8IWV7 1749 aa18.77■□□□□ 0.6
CDH3-208ENST00000569036 WASHC2CQ9Y4E1 1318 aa18.77■□□□□ 0.6
CDH3-208ENST00000569036 KIF3BO15066 747 aa18.77■□□□□ 0.6
CDH3-208ENST00000569036 MAP3K1Q13233 1512 aa18.77■□□□□ 0.6
CDH3-208ENST00000569036 TMEM94Q12767 1356 aa18.76■□□□□ 0.59
CDH3-208ENST00000569036 CASKIN1Q8WXD9 1431 aa18.75■□□□□ 0.59
CDH3-208ENST00000569036 ZNF772Q68DY9 489 aaPredicted RBP18.75■□□□□ 0.59
CDH3-208ENST00000569036 CFDP1Q9UEE9 299 aaPredicted RBP18.75■□□□□ 0.59
CDH3-208ENST00000569036 RTEL1-TNFRSF6BF6WH68 1400 aa18.74■□□□□ 0.59
CDH3-208ENST00000569036 CDK12Q9NYV4 1490 aaPredicted RBP18.74■□□□□ 0.59
CDH3-208ENST00000569036 COL16A1Q07092 1604 aaPredicted RBP18.73■□□□□ 0.59
CDH3-208ENST00000569036 ARHGAP23Q9P227 1491 aa18.71■□□□□ 0.59
CDH3-208ENST00000569036 MBD5Q9P267 1494 aa18.71■□□□□ 0.59
CDH3-208ENST00000569036 NCOA2Q15596 1464 aa18.71■□□□□ 0.59
CDH3-208ENST00000569036 SLIT1O75093 1534 aa18.7■□□□□ 0.58
CDH3-208ENST00000569036 LTKP29376 864 aa18.7■□□□□ 0.58
CDH3-208ENST00000569036 ERVK-7P63135 1459 aa18.7■□□□□ 0.58
CDH3-208ENST00000569036 UBTFP17480 764 aaKnown RBP18.69■□□□□ 0.58
CDH3-208ENST00000569036 RXRBP28702 533 aa18.69■□□□□ 0.58
CDH3-208ENST00000569036 MEX3CQ5U5Q3 659 aaKnown RBP18.69■□□□□ 0.58
CDH3-208ENST00000569036 CCNB3Q8WWL7 1395 aa18.68■□□□□ 0.58
CDH3-208ENST00000569036 SPATA31A6Q5VVP1 1343 aa18.68■□□□□ 0.58
CDH3-208ENST00000569036 EHMT2Q96KQ7 1210 aa18.67■□□□□ 0.58
CDH3-208ENST00000569036 ZNF644Q9H582 1327 aaPredicted RBP18.67■□□□□ 0.58
CDH3-208ENST00000569036 TIAM1Q13009 1591 aa18.67■□□□□ 0.58
CDH3-208ENST00000569036 ABCC3O15438 1527 aa18.66■□□□□ 0.58
CDH3-208ENST00000569036 TXNDC2Q86VQ3 553 aa18.66■□□□□ 0.58
CDH3-208ENST00000569036 RBM33Q96EV2 1170 aaKnown RBP18.65■□□□□ 0.58
CDH3-208ENST00000569036 FGD6Q6ZV73 1430 aa18.65■□□□□ 0.58
CDH3-208ENST00000569036 SHPRHQ149N8 1683 aa18.64■□□□□ 0.57
CDH3-208ENST00000569036 FYCO1Q9BQS8 1478 aa18.64■□□□□ 0.57
CDH3-208ENST00000569036 PRDM15P57071 1507 aaPredicted RBP18.64■□□□□ 0.57
CDH3-208ENST00000569036 CFAP65Q6ZU64 1925 aaKnown RBP18.62■□□□□ 0.57
CDH3-208ENST00000569036 PROSER2Q86WR7 435 aaPredicted RBP18.62■□□□□ 0.57
CDH3-208ENST00000569036 SLAIN2Q9P270 581 aa18.62■□□□□ 0.57
CDH3-208ENST00000569036 SETBP1Q9Y6X0 1596 aa18.62■□□□□ 0.57
CDH3-208ENST00000569036 RGS12O14924 1447 aa18.61■□□□□ 0.57
CDH3-208ENST00000569036 KCNA6P17658 529 aa18.61■□□□□ 0.57
CDH3-208ENST00000569036 CHIC1Q5VXU3 224 aa18.61■□□□□ 0.57
CDH3-208ENST00000569036 NWD1Q149M9 1564 aa18.6■□□□□ 0.57
CDH3-208ENST00000569036 NKTRP30414 1462 aaKnown RBP18.6■□□□□ 0.57
CDH3-208ENST00000569036 MSH6P52701 1360 aa18.6■□□□□ 0.57
CDH3-208ENST00000569036 CCDC141Q6ZP82 1450 aa18.58■□□□□ 0.57
CDH3-208ENST00000569036 EID1Q9Y6B2 187 aa18.58■□□□□ 0.56
CDH3-208ENST00000569036 CEP152O94986 1710 aa18.57■□□□□ 0.56
CDH3-208ENST00000569036 KDM5AP29375 1690 aaKnown RBP18.57■□□□□ 0.56
CDH3-208ENST00000569036 ZRANB1Q9UGI0 708 aa18.56■□□□□ 0.56
CDH3-208ENST00000569036 CAMSAP2Q08AD1 1489 aa18.56■□□□□ 0.56
CDH3-208ENST00000569036 AHDC1Q5TGY3 1603 aaPredicted RBP18.56■□□□□ 0.56
CDH3-208ENST00000569036 TET3O43151 1660 aa18.55■□□□□ 0.56
CDH3-208ENST00000569036 PIK3C2BO00750 1634 aa18.54■□□□□ 0.56
CDH3-208ENST00000569036 MROH1Q8NDA8 1641 aa18.54■□□□□ 0.56
CDH3-208ENST00000569036 TMEM2Q9UHN6 1383 aa18.54■□□□□ 0.56
CDH3-208ENST00000569036 AFF2P51816 1311 aa18.53■□□□□ 0.56
CDH3-208ENST00000569036 EP400Q96L91 3159 aa18.52■□□□□ 0.56
CDH3-208ENST00000569036 DIP2AQ14689 1571 aa18.51■□□□□ 0.55
CDH3-208ENST00000569036 NUTM2BA6NNL0 878 aaPredicted RBP18.51■□□□□ 0.55
CDH3-208ENST00000569036 NUTM2EB1AL46 878 aaPredicted RBP18.51■□□□□ 0.55
CDH3-208ENST00000569036 NUTM2DQ5VT03 806 aaPredicted RBP18.51■□□□□ 0.55
CDH3-208ENST00000569036 NUTM2AQ8IVF1 878 aaPredicted RBP18.51■□□□□ 0.55
CDH3-208ENST00000569036 SLC26A8Q96RN1 970 aa18.51■□□□□ 0.55
CDH3-208ENST00000569036 EIF2AK4Q9P2K8 1649 aaKnown RBP18.49■□□□□ 0.55
CDH3-208ENST00000569036 FOXD1Q16676 465 aa18.49■□□□□ 0.55
CDH3-208ENST00000569036 MTUS2Q5JR59 1369 aa18.49■□□□□ 0.55
CDH3-208ENST00000569036 ATAD2Q6PL18 1390 aa18.48■□□□□ 0.55
CDH3-208ENST00000569036 RBM6P78332 1123 aaKnown RBP18.47■□□□□ 0.55
CDH3-208ENST00000569036 EFCAB6Q5THR3 1501 aa18.46■□□□□ 0.55
CDH3-208ENST00000569036 QTRT2Q9H974 415 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms