RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ARID4BQ4LE39 1312 aaPredicted RBP18.98■□□□□ 0.63
VPS35-210ENST00000568784 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
VPS35-210ENST00000568784 TROQ12816 1431 aaPredicted RBP18.97■□□□□ 0.63
VPS35-210ENST00000568784 PDE3BQ13370 1112 aa18.97■□□□□ 0.63
VPS35-210ENST00000568784 ANO8Q9HCE9 1232 aaPredicted RBP18.97■□□□□ 0.63
VPS35-210ENST00000568784 ARHGEF11O15085 1522 aa18.97■□□□□ 0.63
VPS35-210ENST00000568784 EIF5BO60841 1220 aaKnown RBP18.97■□□□□ 0.63
VPS35-210ENST00000568784 DDRGK1Q96HY6 314 aa18.97■□□□□ 0.63
VPS35-210ENST00000568784 ADAMTS8Q9UP79 889 aa18.97■□□□□ 0.63
VPS35-210ENST00000568784 ABCA5Q8WWZ7 1642 aa18.96■□□□□ 0.63
VPS35-210ENST00000568784 RNF123Q5XPI4 1314 aa18.96■□□□□ 0.63
VPS35-210ENST00000568784 NUP153P49790 1475 aaKnown RBP18.96■□□□□ 0.63
VPS35-210ENST00000568784 SENP3Q9H4L4 574 aaPredicted RBP18.95■□□□□ 0.62
VPS35-210ENST00000568784 WDR62O43379 1518 aa18.95■□□□□ 0.62
VPS35-210ENST00000568784 CCDC144AA2RUR9 1427 aa18.94■□□□□ 0.62
VPS35-210ENST00000568784 TNNT2P45379 298 aaPredicted RBP18.94■□□□□ 0.62
VPS35-210ENST00000568784 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.93■□□□□ 0.62
VPS35-210ENST00000568784 C9orf84Q5VXU9 1444 aa18.92■□□□□ 0.62
VPS35-210ENST00000568784 CARMIL2Q6F5E8 1435 aa18.9■□□□□ 0.62
VPS35-210ENST00000568784 GPATCH8Q9UKJ3 1502 aaKnown RBP18.89■□□□□ 0.62
VPS35-210ENST00000568784 MS4A1P11836 297 aa18.89■□□□□ 0.61
VPS35-210ENST00000568784 FRAT1Q92837 279 aaPredicted RBP18.89■□□□□ 0.61
VPS35-210ENST00000568784 CHGAP10645 457 aaKnown RBP18.89■□□□□ 0.61
VPS35-210ENST00000568784 BCORL1Q5H9F3 1711 aa18.87■□□□□ 0.61
VPS35-210ENST00000568784 BRPF3Q9ULD4 1205 aa18.87■□□□□ 0.61
VPS35-210ENST00000568784 KIAA0586Q9BVV6 1533 aa18.87■□□□□ 0.61
VPS35-210ENST00000568784 DNMT1P26358 1616 aaKnown RBP18.87■□□□□ 0.61
VPS35-210ENST00000568784 GOLGA2Q08379 1002 aa18.87■□□□□ 0.61
VPS35-210ENST00000568784 NFKBIBQ15653 356 aa18.85■□□□□ 0.61
VPS35-210ENST00000568784 APAF1O14727 1248 aa18.84■□□□□ 0.61
VPS35-210ENST00000568784 LRPPRCP42704 1394 aaKnown RBP18.84■□□□□ 0.61
VPS35-210ENST00000568784 ERCC6Q03468 1493 aa18.83■□□□□ 0.61
VPS35-210ENST00000568784 DISP3Q9P2K9 1392 aa18.83■□□□□ 0.6
VPS35-210ENST00000568784 SLKQ9H2G2 1235 aaPredicted RBP18.82■□□□□ 0.6
VPS35-210ENST00000568784 KIF21AQ7Z4S6 1674 aa18.81■□□□□ 0.6
VPS35-210ENST00000568784 DISP1Q96F81 1524 aa18.81■□□□□ 0.6
VPS35-210ENST00000568784 RALGAPBQ86X10 1494 aa18.81■□□□□ 0.6
VPS35-210ENST00000568784 PER1O15534 1290 aaPredicted RBP18.8■□□□□ 0.6
VPS35-210ENST00000568784 GSE1Q14687 1217 aa18.8■□□□□ 0.6
VPS35-210ENST00000568784 SPRYD3Q8NCJ5 442 aa18.8■□□□□ 0.6
VPS35-210ENST00000568784 USP35Q9P2H5 1018 aa18.8■□□□□ 0.6
VPS35-210ENST00000568784 FAM161AQ3B820 660 aa18.79■□□□□ 0.6
VPS35-210ENST00000568784 CENPQQ7L2Z9 268 aaPredicted RBP18.79■□□□□ 0.6
VPS35-210ENST00000568784 BCAR3O75815 825 aa18.79■□□□□ 0.6
VPS35-210ENST00000568784 PPP2R1AP30153 589 aa18.79■□□□□ 0.6
VPS35-210ENST00000568784 RRP7AQ9Y3A4 280 aaKnown RBP18.79■□□□□ 0.6
VPS35-210ENST00000568784 RAPGEF6Q8TEU7 1601 aa18.78■□□□□ 0.6
VPS35-210ENST00000568784 ADAMTS12P58397 1594 aa18.78■□□□□ 0.6
VPS35-210ENST00000568784 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
VPS35-210ENST00000568784 BCL2L13Q9BXK5 485 aa18.77■□□□□ 0.6
VPS35-210ENST00000568784 FRAT2O75474 233 aaPredicted RBP18.77■□□□□ 0.6
VPS35-210ENST00000568784 PARD3Q8TEW0 1356 aa18.76■□□□□ 0.59
VPS35-210ENST00000568784 GRIN2AQ12879 1464 aa18.76■□□□□ 0.59
VPS35-210ENST00000568784 CLUAP1Q96AJ1 413 aa18.76■□□□□ 0.59
VPS35-210ENST00000568784 COG6Q9Y2V7 657 aa18.76■□□□□ 0.59
VPS35-210ENST00000568784 KIAA0556O60303 1618 aa18.76■□□□□ 0.59
VPS35-210ENST00000568784 KIF14Q15058 1648 aa18.75■□□□□ 0.59
VPS35-210ENST00000568784 TARBP1Q13395 1621 aaKnown RBP18.75■□□□□ 0.59
VPS35-210ENST00000568784 KDM5CP41229 1560 aa18.75■□□□□ 0.59
VPS35-210ENST00000568784 TESK2Q96S53 571 aa18.74■□□□□ 0.59
VPS35-210ENST00000568784 ERBINQ96RT1 1412 aa18.73■□□□□ 0.59
VPS35-210ENST00000568784 CDCA8Q53HL2 280 aa18.73■□□□□ 0.59
VPS35-210ENST00000568784 MBD5Q9P267 1494 aa18.73■□□□□ 0.59
VPS35-210ENST00000568784 PANK1Q8TE04 598 aa18.72■□□□□ 0.59
VPS35-210ENST00000568784 DUSP27Q5VZP5 1158 aa18.71■□□□□ 0.59
VPS35-210ENST00000568784 PBRM1Q86U86 1689 aa18.71■□□□□ 0.59
VPS35-210ENST00000568784 PTPRGP23470 1445 aa18.71■□□□□ 0.59
VPS35-210ENST00000568784 IFT140Q96RY7 1462 aa18.7■□□□□ 0.58
VPS35-210ENST00000568784 UHRF1BP1Q6BDS2 1440 aa18.7■□□□□ 0.58
VPS35-210ENST00000568784 MAGI1Q96QZ7 1491 aaPredicted RBP18.7■□□□□ 0.58
VPS35-210ENST00000568784 UPF2Q9HAU5 1272 aaKnown RBP18.7■□□□□ 0.58
VPS35-210ENST00000568784 PLEKHH1Q9ULM0 1364 aa18.68■□□□□ 0.58
VPS35-210ENST00000568784 PRAG1Q86YV5 1406 aa18.68■□□□□ 0.58
VPS35-210ENST00000568784 SPINK5Q9NQ38 1064 aaPredicted RBP18.67■□□□□ 0.58
VPS35-210ENST00000568784 RSPH4AQ5TD94 716 aa18.65■□□□□ 0.58
VPS35-210ENST00000568784 BECN1Q14457 450 aa18.65■□□□□ 0.58
VPS35-210ENST00000568784 CENPJQ9HC77 1338 aaPredicted RBP18.65■□□□□ 0.58
VPS35-210ENST00000568784 WASHC2CQ9Y4E1 1318 aa18.65■□□□□ 0.58
VPS35-210ENST00000568784 GZF1Q9H116 711 aaPredicted RBP18.64■□□□□ 0.57
VPS35-210ENST00000568784 ATP10BO94823 1461 aa18.64■□□□□ 0.57
VPS35-210ENST00000568784 ADGRL2O95490 1459 aa18.63■□□□□ 0.57
VPS35-210ENST00000568784 C8orf34Q49A92 452 aa18.63■□□□□ 0.57
VPS35-210ENST00000568784 MORC1Q86VD1 984 aa18.63■□□□□ 0.57
VPS35-210ENST00000568784 SLFN5Q08AF3 891 aa18.63■□□□□ 0.57
VPS35-210ENST00000568784 SAFB2Q14151 953 aaKnown RBP eCLIP18.63■□□□□ 0.57
VPS35-210ENST00000568784 CFAP70Q5T0N1 1121 aa18.63■□□□□ 0.57
VPS35-210ENST00000568784 AFAP1Q8N556 730 aa18.62■□□□□ 0.57
VPS35-210ENST00000568784 PLEKHH2Q8IVE3 1493 aa18.61■□□□□ 0.57
VPS35-210ENST00000568784 KIF3BO15066 747 aa18.61■□□□□ 0.57
VPS35-210ENST00000568784 IGHDP01880 384 aa18.61■□□□□ 0.57
VPS35-210ENST00000568784 NUTM2DQ5VT03 806 aaPredicted RBP18.6■□□□□ 0.57
VPS35-210ENST00000568784 ITSN2Q9NZM3 1697 aa18.6■□□□□ 0.57
VPS35-210ENST00000568784 E9PSI1 815 aa18.6■□□□□ 0.57
VPS35-210ENST00000568784 TRAK1Q9UPV9 953 aa18.6■□□□□ 0.57
VPS35-210ENST00000568784 ARHGAP5Q13017 1502 aa18.59■□□□□ 0.57
VPS35-210ENST00000568784 FAM135AQ9P2D6 1515 aa18.59■□□□□ 0.57
VPS35-210ENST00000568784 EFCAB2Q5VUJ9 269 aa18.59■□□□□ 0.57
VPS35-210ENST00000568784 DMRT2Q9Y5R5 561 aa18.59■□□□□ 0.57
VPS35-210ENST00000568784 CCDC141Q6ZP82 1450 aa18.59■□□□□ 0.57
VPS35-210ENST00000568784 ARHGEF12Q9NZN5 1544 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms