RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	PIP4K2B	P78356	416 aa		13.25	□□□□□ -0.29
TSC2-223	ENST00000568566	VPS8	Q8N3P4	1428 aa		13.24	□□□□□ -0.29
TSC2-223	ENST00000568566	HSPA1L	P34931	641 aa		13.24	□□□□□ -0.29
TSC2-223	ENST00000568566	MBD5	Q9P267	1494 aa		13.23	□□□□□ -0.29
TSC2-223	ENST00000568566	TNR	Q92752	1358 aa		13.23	□□□□□ -0.29
TSC2-223	ENST00000568566	KANK4	Q5T7N3	995 aa	Predicted RBP	13.23	□□□□□ -0.29
TSC2-223	ENST00000568566	CPS1	P31327	1500 aa		13.23	□□□□□ -0.29
TSC2-223	ENST00000568566	EHBP1L1	Q8N3D4	1523 aa		13.23	□□□□□ -0.29
TSC2-223	ENST00000568566	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.22	□□□□□ -0.29
TSC2-223	ENST00000568566	KDM5D	Q9BY66	1539 aa		13.22	□□□□□ -0.29
TSC2-223	ENST00000568566	SHANK2	Q9UPX8	1470 aa		13.22	□□□□□ -0.29
TSC2-223	ENST00000568566	DHX29	Q7Z478	1369 aa	Known RBP	13.21	□□□□□ -0.29
TSC2-223	ENST00000568566	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.21	□□□□□ -0.29
TSC2-223	ENST00000568566	PZP	P20742	1482 aa		13.21	□□□□□ -0.3
TSC2-223	ENST00000568566	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.21	□□□□□ -0.3
TSC2-223	ENST00000568566	VWDE	Q8N2E2	1590 aa		13.2	□□□□□ -0.3
TSC2-223	ENST00000568566	KIF3B	O15066	747 aa		13.19	□□□□□ -0.3
TSC2-223	ENST00000568566	TOM1	O60784	492 aa		13.19	□□□□□ -0.3
TSC2-223	ENST00000568566	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
TSC2-223	ENST00000568566	CCDC141	Q6ZP82	1450 aa		13.18	□□□□□ -0.3
TSC2-223	ENST00000568566	FAM135A	Q9P2D6	1515 aa		13.18	□□□□□ -0.3
TSC2-223	ENST00000568566	CAMSAP2	Q08AD1	1489 aa		13.17	□□□□□ -0.3
TSC2-223	ENST00000568566	ALK	Q9UM73	1620 aa		13.17	□□□□□ -0.3
TSC2-223	ENST00000568566	WASHC2C	Q9Y4E1	1318 aa		13.16	□□□□□ -0.3
TSC2-223	ENST00000568566	UGGT1	Q9NYU2	1555 aa		13.16	□□□□□ -0.3
TSC2-223	ENST00000568566	NPHP4	O75161	1426 aa	Predicted RBP	13.16	□□□□□ -0.3
TSC2-223	ENST00000568566	ANKLE2	Q86XL3	938 aa		13.16	□□□□□ -0.3
TSC2-223	ENST00000568566	NLRP1	Q9C000	1473 aa		13.16	□□□□□ -0.3
TSC2-223	ENST00000568566	DEPDC5	O75140	1603 aa		13.15	□□□□□ -0.3
TSC2-223	ENST00000568566	SENP3	Q9H4L4	574 aa	Predicted RBP	13.15	□□□□□ -0.3
TSC2-223	ENST00000568566	IQGAP1	P46940	1657 aa		13.15	□□□□□ -0.31
TSC2-223	ENST00000568566	MIA2	Q96PC5	1412 aa		13.14	□□□□□ -0.31
TSC2-223	ENST00000568566	PHF23	Q9BUL5	403 aa	Predicted RBP	13.14	□□□□□ -0.31
TSC2-223	ENST00000568566	NCOA2	Q15596	1464 aa		13.14	□□□□□ -0.31
TSC2-223	ENST00000568566	MED14	O60244	1454 aa		13.13	□□□□□ -0.31
TSC2-223	ENST00000568566	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.13	□□□□□ -0.31
TSC2-223	ENST00000568566	STRCP1	A6NGW2	1772 aa		13.12	□□□□□ -0.31
TSC2-223	ENST00000568566	RNF17	Q9BXT8	1623 aa	Known RBP	13.11	□□□□□ -0.31
TSC2-223	ENST00000568566	ARHGEF5	Q12774	1597 aa		13.11	□□□□□ -0.31
TSC2-223	ENST00000568566	ABCC3	O15438	1527 aa		13.1	□□□□□ -0.31
TSC2-223	ENST00000568566	SYNM	O15061	1565 aa		13.1	□□□□□ -0.31
TSC2-223	ENST00000568566	LRRC7	Q96NW7	1537 aa		13.09	□□□□□ -0.31
TSC2-223	ENST00000568566	LRRC9	Q6ZRR7	1453 aa		13.09	□□□□□ -0.31
TSC2-223	ENST00000568566	ZC3H13	Q5T200	1668 aa	Known RBP	13.08	□□□□□ -0.31
TSC2-223	ENST00000568566	ERVK-7	P63135	1459 aa		13.08	□□□□□ -0.32
TSC2-223	ENST00000568566	RSPH4A	Q5TD94	716 aa		13.07	□□□□□ -0.32
TSC2-223	ENST00000568566	CEP152	O94986	1710 aa		13.06	□□□□□ -0.32
TSC2-223	ENST00000568566	TSPY4	P0CV99	314 aa		13.06	□□□□□ -0.32
TSC2-223	ENST00000568566	TSPY10	P0CW01	314 aa		13.06	□□□□□ -0.32
TSC2-223	ENST00000568566	MROH1	Q8NDA8	1641 aa		13.06	□□□□□ -0.32
TSC2-223	ENST00000568566	UBR1	Q8IWV7	1749 aa		13.05	□□□□□ -0.32
TSC2-223	ENST00000568566	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.05	□□□□□ -0.32
TSC2-223	ENST00000568566	CFAP65	Q6ZU64	1925 aa	Known RBP	13.04	□□□□□ -0.32
TSC2-223	ENST00000568566	MAST1	Q9Y2H9	1570 aa		13.04	□□□□□ -0.32
TSC2-223	ENST00000568566	APLP2	Q06481	763 aa		13.04	□□□□□ -0.32
TSC2-223	ENST00000568566	SCAF11	Q99590	1463 aa	Known RBP	13.04	□□□□□ -0.32
TSC2-223	ENST00000568566	MAP3K1	Q13233	1512 aa		13.03	□□□□□ -0.32
TSC2-223	ENST00000568566	XIRP1	Q702N8	1843 aa	Known RBP	13.01	□□□□□ -0.33
TSC2-223	ENST00000568566	SLIT1	O75093	1534 aa		12.99	□□□□□ -0.33
TSC2-223	ENST00000568566	ARHGAP23	Q9P227	1491 aa		12.99	□□□□□ -0.33
TSC2-223	ENST00000568566	LTK	P29376	864 aa		12.99	□□□□□ -0.33
TSC2-223	ENST00000568566	TXNDC2	Q86VQ3	553 aa		12.98	□□□□□ -0.33
TSC2-223	ENST00000568566	RGS17	Q9UGC6	210 aa	Predicted RBP	12.98	□□□□□ -0.33
TSC2-223	ENST00000568566	PRDM15	P57071	1507 aa	Predicted RBP	12.98	□□□□□ -0.33
TSC2-223	ENST00000568566	DUOX2	Q9NRD8	1548 aa		12.98	□□□□□ -0.33
TSC2-223	ENST00000568566	PIK3C2B	O00750	1634 aa		12.96	□□□□□ -0.33
TSC2-223	ENST00000568566	MYOM3	Q5VTT5	1437 aa		12.96	□□□□□ -0.34
TSC2-223	ENST00000568566	KIF15	Q9NS87	1388 aa		12.94	□□□□□ -0.34
TSC2-223	ENST00000568566	CROCC2	H7BZ55	1655 aa		12.94	□□□□□ -0.34
TSC2-223	ENST00000568566	EID1	Q9Y6B2	187 aa		12.94	□□□□□ -0.34
TSC2-223	ENST00000568566	ARHGAP31	Q2M1Z3	1444 aa		12.94	□□□□□ -0.34
TSC2-223	ENST00000568566	TMEM2	Q9UHN6	1383 aa		12.94	□□□□□ -0.34
TSC2-223	ENST00000568566	ERBIN	Q96RT1	1412 aa		12.93	□□□□□ -0.34
TSC2-223	ENST00000568566	TMEM94	Q12767	1356 aa		12.93	□□□□□ -0.34
TSC2-223	ENST00000568566	ROBO1	Q9Y6N7	1651 aa		12.93	□□□□□ -0.34
TSC2-223	ENST00000568566	FAM135B	Q49AJ0	1406 aa		12.92	□□□□□ -0.34
TSC2-223	ENST00000568566	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
TSC2-223	ENST00000568566	EFCAB6	Q5THR3	1501 aa		12.92	□□□□□ -0.34
TSC2-223	ENST00000568566	POTEA	Q6S8J7	498 aa		12.91	□□□□□ -0.34
TSC2-223	ENST00000568566	RRP7BP	Q9NSQ0	103 aa		12.91	□□□□□ -0.34
TSC2-223	ENST00000568566	STAG3	Q9UJ98	1225 aa		12.91	□□□□□ -0.34
TSC2-223	ENST00000568566	RBM33	Q96EV2	1170 aa	Known RBP	12.9	□□□□□ -0.34
TSC2-223	ENST00000568566	ABCC5	O15440	1437 aa		12.89	□□□□□ -0.35
TSC2-223	ENST00000568566	SETD1A	O15047	1707 aa	Known RBP	12.89	□□□□□ -0.35
TSC2-223	ENST00000568566	KDM5A	P29375	1690 aa	Known RBP	12.89	□□□□□ -0.35
TSC2-223	ENST00000568566	FGD6	Q6ZV73	1430 aa		12.88	□□□□□ -0.35
TSC2-223	ENST00000568566	PTPN23	Q9H3S7	1636 aa		12.88	□□□□□ -0.35
TSC2-223	ENST00000568566	FAM50A	Q14320	339 aa	Known RBP	12.88	□□□□□ -0.35
TSC2-223	ENST00000568566	SLC26A8	Q96RN1	970 aa		12.88	□□□□□ -0.35
TSC2-223	ENST00000568566	KANK1	Q14678	1352 aa		12.88	□□□□□ -0.35
TSC2-223	ENST00000568566	NWD1	Q149M9	1564 aa		12.87	□□□□□ -0.35
TSC2-223	ENST00000568566	KCNA6	P17658	529 aa		12.87	□□□□□ -0.35
TSC2-223	ENST00000568566	PROSER2	Q86WR7	435 aa	Predicted RBP	12.87	□□□□□ -0.35
TSC2-223	ENST00000568566	ADGRB3	O60242	1522 aa		12.87	□□□□□ -0.35
TSC2-223	ENST00000568566	DAPK1	P53355	1430 aa		12.87	□□□□□ -0.35
TSC2-223	ENST00000568566	TET3	O43151	1660 aa		12.86	□□□□□ -0.35
TSC2-223	ENST00000568566	NKTR	P30414	1462 aa	Known RBP	12.86	□□□□□ -0.35
TSC2-223	ENST00000568566	IDI1	Q13907	227 aa		12.86	□□□□□ -0.35
TSC2-223	ENST00000568566	LMTK2	Q8IWU2	1503 aa		12.86	□□□□□ -0.35
TSC2-223	ENST00000568566	PHLPP1	O60346	1717 aa		12.85	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms