RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 EIF2AK4Q9P2K8 1649 aaKnown RBP27.48■■□□□ 1.99
CLN3-233ENST00000568452 RICTORQ6R327 1708 aa27.47■■□□□ 1.99
CLN3-233ENST00000568452 IQGAP3Q86VI3 1631 aa27.46■■□□□ 1.99
CLN3-233ENST00000568452 FOXD1Q16676 465 aa27.46■■□□□ 1.99
CLN3-233ENST00000568452 RAPGEF3O95398 923 aa27.44■■□□□ 1.98
CLN3-233ENST00000568452 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.43■■□□□ 1.98
CLN3-233ENST00000568452 A2MP01023 1474 aa27.43■■□□□ 1.98
CLN3-233ENST00000568452 DEPDC5O75140 1603 aa27.41■■□□□ 1.98
CLN3-233ENST00000568452 RPRD2Q5VT52 1461 aaKnown RBP27.4■■□□□ 1.98
CLN3-233ENST00000568452 ZMYM4Q5VZL5 1548 aa27.38■■□□□ 1.97
CLN3-233ENST00000568452 FRMPD1Q5SYB0 1578 aa27.38■■□□□ 1.97
CLN3-233ENST00000568452 KANK1Q14678 1352 aa27.37■■□□□ 1.97
CLN3-233ENST00000568452 ABCA6Q8N139 1617 aa27.37■■□□□ 1.97
CLN3-233ENST00000568452 KIF3BO15066 747 aa27.37■■□□□ 1.97
CLN3-233ENST00000568452 PPP1R15AO75807 674 aaPredicted RBP27.36■■□□□ 1.97
CLN3-233ENST00000568452 DIP2CQ9Y2E4 1556 aa27.33■■□□□ 1.97
CLN3-233ENST00000568452 PRDM15P57071 1507 aaPredicted RBP27.33■■□□□ 1.97
CLN3-233ENST00000568452 BCORL1Q5H9F3 1711 aa27.31■■□□□ 1.96
CLN3-233ENST00000568452 VWDEQ8N2E2 1590 aa27.31■■□□□ 1.96
CLN3-233ENST00000568452 RNF17Q9BXT8 1623 aaKnown RBP27.3■■□□□ 1.96
CLN3-233ENST00000568452 COL17A1Q9UMD9 1497 aaPredicted RBP27.3■■□□□ 1.96
CLN3-233ENST00000568452 ZNF316A6NFI3 1004 aaPredicted RBP27.3■■□□□ 1.96
CLN3-233ENST00000568452 MROH1Q8NDA8 1641 aa27.27■■□□□ 1.96
CLN3-233ENST00000568452 TET3O43151 1660 aa27.26■■□□□ 1.95
CLN3-233ENST00000568452 YEATS2Q9ULM3 1422 aa27.25■■□□□ 1.95
CLN3-233ENST00000568452 ATP10AO60312 1499 aa27.24■■□□□ 1.95
CLN3-233ENST00000568452 L3MBTL2Q969R5 705 aa27.23■■□□□ 1.95
CLN3-233ENST00000568452 LMTK2Q8IWU2 1503 aa27.21■■□□□ 1.95
CLN3-233ENST00000568452 CCDC144AA2RUR9 1427 aa27.2■■□□□ 1.95
CLN3-233ENST00000568452 E9PCH4 1651 aa27.19■■□□□ 1.94
CLN3-233ENST00000568452 REREQ9P2R6 1566 aa27.19■■□□□ 1.94
CLN3-233ENST00000568452 PLA2R1Q13018 1463 aa27.18■■□□□ 1.94
CLN3-233ENST00000568452 GGT6Q6P531 493 aa27.15■■□□□ 1.94
CLN3-233ENST00000568452 EFCAB6Q5THR3 1501 aa27.14■■□□□ 1.93
CLN3-233ENST00000568452 PTPRTO14522 1441 aa27.13■■□□□ 1.93
CLN3-233ENST00000568452 TRPM2O94759 1503 aa27.11■■□□□ 1.93
CLN3-233ENST00000568452 AGLP35573 1532 aa27.11■■□□□ 1.93
CLN3-233ENST00000568452 ARHGEF40Q8TER5 1519 aa27.11■■□□□ 1.93
CLN3-233ENST00000568452 CEP152O94986 1710 aa27.1■■□□□ 1.93
CLN3-233ENST00000568452 SPHKAPQ2M3C7 1700 aa27.1■■□□□ 1.93
CLN3-233ENST00000568452 WASHC2CQ9Y4E1 1318 aa27.08■■□□□ 1.93
CLN3-233ENST00000568452 ABCC3O15438 1527 aa27.08■■□□□ 1.93
CLN3-233ENST00000568452 ZC3H13Q5T200 1668 aaKnown RBP27.07■■□□□ 1.92
CLN3-233ENST00000568452 PPP6R1Q9UPN7 881 aa27.03■■□□□ 1.92
CLN3-233ENST00000568452 CAMSAP1Q5T5Y3 1602 aa27.01■■□□□ 1.91
CLN3-233ENST00000568452 UHRF1BP1Q6BDS2 1440 aa27.01■■□□□ 1.91
CLN3-233ENST00000568452 NPATQ14207 1427 aa26.99■■□□□ 1.91
CLN3-233ENST00000568452 NBPF8Q3BBV2 869 aa26.99■■□□□ 1.91
CLN3-233ENST00000568452 ARHGAP31Q2M1Z3 1444 aa26.99■■□□□ 1.91
CLN3-233ENST00000568452 CLTCL1P53675 1640 aa26.97■■□□□ 1.91
CLN3-233ENST00000568452 DIEXFQ68CQ4 756 aaKnown RBP26.96■■□□□ 1.91
CLN3-233ENST00000568452 DCAF11Q8TEB1 546 aa26.96■■□□□ 1.91
CLN3-233ENST00000568452 CNTLNQ9NXG0 1405 aa26.96■■□□□ 1.91
CLN3-233ENST00000568452 NEURL4Q96JN8 1562 aa26.96■■□□□ 1.91
CLN3-233ENST00000568452 SPATA31E1Q6ZUB1 1445 aa26.95■■□□□ 1.9
CLN3-233ENST00000568452 RGL3Q3MIN7 710 aa26.94■■□□□ 1.9
CLN3-233ENST00000568452 STAC3Q96MF2 364 aa26.91■■□□□ 1.9
CLN3-233ENST00000568452 KDM2AQ9Y2K7 1162 aa26.9■■□□□ 1.9
CLN3-233ENST00000568452 NOS1P29475 1434 aa26.89■■□□□ 1.9
CLN3-233ENST00000568452 EIF4G2P78344 907 aaKnown RBP eCLIP26.89■■□□□ 1.91e-9■■■■□ 22.4
CLN3-233ENST00000568452 ZNF326Q5BKZ1 582 aaKnown RBP26.89■■□□□ 1.9
CLN3-233ENST00000568452 SIGLEC1Q9BZZ2 1709 aa26.89■■□□□ 1.89
CLN3-233ENST00000568452 RALGAPBQ86X10 1494 aa26.88■■□□□ 1.89
CLN3-233ENST00000568452 KIF1BO60333 1816 aa26.86■■□□□ 1.89
CLN3-233ENST00000568452 PRAG1Q86YV5 1406 aa26.85■■□□□ 1.89
CLN3-233ENST00000568452 UGGT1Q9NYU2 1555 aa26.84■■□□□ 1.89
CLN3-233ENST00000568452 ARID4BQ4LE39 1312 aaPredicted RBP26.83■■□□□ 1.88
CLN3-233ENST00000568452 HSPA5P11021 654 aaKnown RBP26.82■■□□□ 1.88
CLN3-233ENST00000568452 CFAP65Q6ZU64 1925 aaKnown RBP26.8■■□□□ 1.88
CLN3-233ENST00000568452 MLECQ14165 292 aa26.79■■□□□ 1.88
CLN3-233ENST00000568452 ESF1Q9H501 851 aaKnown RBP26.79■■□□□ 1.88
CLN3-233ENST00000568452 CLTCQ00610 1675 aaKnown RBP26.79■■□□□ 1.88
CLN3-233ENST00000568452 PREX1Q8TCU6 1659 aa26.79■■□□□ 1.88
CLN3-233ENST00000568452 PIK3C2BO00750 1634 aa26.79■■□□□ 1.88
CLN3-233ENST00000568452 SYNMO15061 1565 aa26.78■■□□□ 1.88
CLN3-233ENST00000568452 ADGRB3O60242 1522 aa26.78■■□□□ 1.88
CLN3-233ENST00000568452 SLC52A1Q9NWF4 448 aa26.78■■□□□ 1.88
CLN3-233ENST00000568452 TRPM1Q7Z4N2 1603 aa26.77■■□□□ 1.88
CLN3-233ENST00000568452 HIRIP3Q9BW71 556 aaPredicted RBP26.76■■□□□ 1.87
CLN3-233ENST00000568452 ERVK-7P63135 1459 aa26.74■■□□□ 1.87
CLN3-233ENST00000568452 CARD11Q9BXL7 1154 aa26.74■■□□□ 1.87
CLN3-233ENST00000568452 ROCK2O75116 1388 aaKnown RBP26.74■■□□□ 1.87
CLN3-233ENST00000568452 MYOM2P54296 1465 aa26.73■■□□□ 1.87
CLN3-233ENST00000568452 MROH2AA6NES4 1674 aa26.73■■□□□ 1.87
CLN3-233ENST00000568452 RPGRIP1LQ68CZ1 1315 aa26.72■■□□□ 1.87
CLN3-233ENST00000568452 MADDQ8WXG6 1647 aa26.72■■□□□ 1.87
CLN3-233ENST00000568452 CHGAP10645 457 aaKnown RBP26.72■■□□□ 1.87
CLN3-233ENST00000568452 USP47Q96K76 1375 aa26.72■■□□□ 1.87
CLN3-233ENST00000568452 GPRASP1Q5JY77 1395 aa26.71■■□□□ 1.87
CLN3-233ENST00000568452 LAMC1P11047 1609 aa26.69■■□□□ 1.86
CLN3-233ENST00000568452 IFT172Q9UG01 1749 aa26.69■■□□□ 1.86
CLN3-233ENST00000568452 SPATA31D1Q6ZQQ2 1576 aa26.68■■□□□ 1.86
CLN3-233ENST00000568452 ZMYM3Q14202 1370 aa26.67■■□□□ 1.86
CLN3-233ENST00000568452 IDI1Q13907 227 aa26.67■■□□□ 1.86
CLN3-233ENST00000568452 FBXO31Q5XUX0 539 aaPredicted RBP26.67■■□□□ 1.86
CLN3-233ENST00000568452 KIAA1210Q9ULL0 1709 aa26.63■■□□□ 1.85
CLN3-233ENST00000568452 NRXN1Q9ULB1 1477 aa26.62■■□□□ 1.85
CLN3-233ENST00000568452 PPLO60437 1756 aa26.62■■□□□ 1.85
CLN3-233ENST00000568452 NBPF1Q3BBV0 1214 aa26.61■■□□□ 1.85
CLN3-233ENST00000568452 DDX10Q13206 875 aaKnown RBP26.59■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms