RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 PKD2Q13563 968 aa26.66■■□□□ 1.86
CLN3-231ENST00000568422 LTBP4Q8N2S1 1624 aa26.65■■□□□ 1.86
CLN3-231ENST00000568422 IQSEC2Q5JU85 1478 aa26.63■■□□□ 1.85
CLN3-231ENST00000568422 MAST1Q9Y2H9 1570 aa26.63■■□□□ 1.85
CLN3-231ENST00000568422 MIA2Q96PC5 1412 aa26.62■■□□□ 1.85
CLN3-231ENST00000568422 A2ML1A8K2U0 1454 aa26.62■■□□□ 1.85
CLN3-231ENST00000568422 TCOF1Q13428 1488 aaKnown RBP26.62■■□□□ 1.85
CLN3-231ENST00000568422 NCKAP5LQ9HCH0 1330 aa26.61■■□□□ 1.85
CLN3-231ENST00000568422 WASHC2CQ9Y4E1 1318 aa26.61■■□□□ 1.85
CLN3-231ENST00000568422 PZPP20742 1482 aa26.61■■□□□ 1.85
CLN3-231ENST00000568422 MYOM3Q5VTT5 1437 aa26.59■■□□□ 1.85
CLN3-231ENST00000568422 DNMT1P26358 1616 aaKnown RBP26.59■■□□□ 1.85
CLN3-231ENST00000568422 KANK4Q5T7N3 995 aaPredicted RBP26.59■■□□□ 1.85
CLN3-231ENST00000568422 RNF17Q9BXT8 1623 aaKnown RBP26.56■■□□□ 1.84
CLN3-231ENST00000568422 TNRQ92752 1358 aa26.56■■□□□ 1.84
CLN3-231ENST00000568422 EIF2AK4Q9P2K8 1649 aaKnown RBP26.55■■□□□ 1.84
CLN3-231ENST00000568422 ZC3H13Q5T200 1668 aaKnown RBP26.53■■□□□ 1.84
CLN3-231ENST00000568422 FBXO31Q5XUX0 539 aaPredicted RBP26.52■■□□□ 1.84
CLN3-231ENST00000568422 POLR1AO95602 1720 aaPredicted RBP26.51■■□□□ 1.83
CLN3-231ENST00000568422 APLP2Q06481 763 aa26.51■■□□□ 1.83
CLN3-231ENST00000568422 NLRP1Q9C000 1473 aa26.49■■□□□ 1.83
CLN3-231ENST00000568422 ZNF335Q9H4Z2 1342 aaPredicted RBP26.48■■□□□ 1.83
CLN3-231ENST00000568422 DUOX2Q9NRD8 1548 aa26.46■■□□□ 1.83
CLN3-231ENST00000568422 ABCC3O15438 1527 aa26.45■■□□□ 1.83
CLN3-231ENST00000568422 THEMISQ8N1K5 641 aaPredicted RBP26.44■■□□□ 1.82
CLN3-231ENST00000568422 CROCC2H7BZ55 1655 aa26.44■■□□□ 1.82
CLN3-231ENST00000568422 PTPN23Q9H3S7 1636 aa26.43■■□□□ 1.82
CLN3-231ENST00000568422 SHANK2Q9UPX8 1470 aa26.42■■□□□ 1.82
CLN3-231ENST00000568422 UGGT1Q9NYU2 1555 aa26.42■■□□□ 1.82
CLN3-231ENST00000568422 MROH1Q8NDA8 1641 aa26.42■■□□□ 1.82
CLN3-231ENST00000568422 NEURL4Q96JN8 1562 aa26.41■■□□□ 1.82
CLN3-231ENST00000568422 SPATA31D1Q6ZQQ2 1576 aa26.41■■□□□ 1.82
CLN3-231ENST00000568422 ANKLE2Q86XL3 938 aa26.4■■□□□ 1.82
CLN3-231ENST00000568422 CEP152O94986 1710 aa26.38■■□□□ 1.81
CLN3-231ENST00000568422 DEPDC5O75140 1603 aa26.38■■□□□ 1.81
CLN3-231ENST00000568422 ABCC5O15440 1437 aa26.38■■□□□ 1.81
CLN3-231ENST00000568422 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.37■■□□□ 1.81
CLN3-231ENST00000568422 KIF15Q9NS87 1388 aa26.36■■□□□ 1.81
CLN3-231ENST00000568422 ERBINQ96RT1 1412 aa26.36■■□□□ 1.81
CLN3-231ENST00000568422 ERVK-7P63135 1459 aa26.36■■□□□ 1.81
CLN3-231ENST00000568422 FGD6Q6ZV73 1430 aa26.35■■□□□ 1.81
CLN3-231ENST00000568422 MED14O60244 1454 aa26.35■■□□□ 1.81
CLN3-231ENST00000568422 CPS1P31327 1500 aa26.34■■□□□ 1.81
CLN3-231ENST00000568422 PRDM15P57071 1507 aaPredicted RBP26.34■■□□□ 1.81
CLN3-231ENST00000568422 DAPK1P53355 1430 aa26.33■■□□□ 1.81
CLN3-231ENST00000568422 CFAP65Q6ZU64 1925 aaKnown RBP26.33■■□□□ 1.81
CLN3-231ENST00000568422 UBAP1LF5GYI3 381 aa26.32■■□□□ 1.8
CLN3-231ENST00000568422 RRP7BPQ9NSQ0 103 aa26.3■■□□□ 1.8
CLN3-231ENST00000568422 NPHP4O75161 1426 aaPredicted RBP26.3■■□□□ 1.8
CLN3-231ENST00000568422 ARHGAP31Q2M1Z3 1444 aa26.3■■□□□ 1.8
CLN3-231ENST00000568422 IQGAP1P46940 1657 aa26.29■■□□□ 1.8
CLN3-231ENST00000568422 DISP3Q9P2K9 1392 aa26.28■■□□□ 1.8
CLN3-231ENST00000568422 UBR1Q8IWV7 1749 aa26.27■■□□□ 1.8
CLN3-231ENST00000568422 VWDEQ8N2E2 1590 aa26.26■■□□□ 1.79
CLN3-231ENST00000568422 ANKRD30AQ9BXX3 1397 aa26.26■■□□□ 1.79
CLN3-231ENST00000568422 KANK1Q14678 1352 aa26.24■■□□□ 1.79
CLN3-231ENST00000568422 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.2■■□□□ 1.78
CLN3-231ENST00000568422 TOM1O60784 492 aa26.19■■□□□ 1.78
CLN3-231ENST00000568422 LMTK2Q8IWU2 1503 aa26.19■■□□□ 1.78
CLN3-231ENST00000568422 CHIC2Q9UKJ5 165 aa26.18■■□□□ 1.78
CLN3-231ENST00000568422 SLIT1O75093 1534 aa26.17■■□□□ 1.78
CLN3-231ENST00000568422 ADGRL2O95490 1459 aa26.17■■□□□ 1.78
CLN3-231ENST00000568422 SCAF11Q99590 1463 aaKnown RBP26.16■■□□□ 1.78
CLN3-231ENST00000568422 ARHGAP23Q9P227 1491 aa26.16■■□□□ 1.78
CLN3-231ENST00000568422 KDM5AP29375 1690 aaKnown RBP26.15■■□□□ 1.78
CLN3-231ENST00000568422 PIK3C2BO00750 1634 aa26.14■■□□□ 1.77
CLN3-231ENST00000568422 STRCP1A6NGW2 1772 aa26.12■■□□□ 1.77
CLN3-231ENST00000568422 SYNMO15061 1565 aa26.12■■□□□ 1.77
CLN3-231ENST00000568422 TXNDC2Q86VQ3 553 aa26.11■■□□□ 1.77
CLN3-231ENST00000568422 EID1Q9Y6B2 187 aa26.1■■□□□ 1.77
CLN3-231ENST00000568422 FAM50AQ14320 339 aaKnown RBP26.09■■□□□ 1.77
CLN3-231ENST00000568422 SCAF1Q9H7N4 1312 aaKnown RBP26.09■■□□□ 1.77
CLN3-231ENST00000568422 EFCAB6Q5THR3 1501 aa26.09■■□□□ 1.77
CLN3-231ENST00000568422 LTKP29376 864 aa26.08■■□□□ 1.77
CLN3-231ENST00000568422 PIP4K2BP78356 416 aa26.08■■□□□ 1.77
CLN3-231ENST00000568422 ILDR2Q71H61 639 aa26.08■■□□□ 1.77
CLN3-231ENST00000568422 STAG3Q9UJ98 1225 aa26.07■■□□□ 1.76
CLN3-231ENST00000568422 LRRC7Q96NW7 1537 aa26.07■■□□□ 1.76
CLN3-231ENST00000568422 TMEM2Q9UHN6 1383 aa26.07■■□□□ 1.76
CLN3-231ENST00000568422 ANKRD50Q9ULJ7 1429 aa26.05■■□□□ 1.76
CLN3-231ENST00000568422 NOS1P29475 1434 aa26.04■■□□□ 1.76
CLN3-231ENST00000568422 HSPA1LP34931 641 aa26.03■■□□□ 1.76
CLN3-231ENST00000568422 IDI1Q13907 227 aa26.03■■□□□ 1.76
CLN3-231ENST00000568422 RPRD2Q5VT52 1461 aaKnown RBP26.03■■□□□ 1.76
CLN3-231ENST00000568422 ALKQ9UM73 1620 aa26.03■■□□□ 1.76
CLN3-231ENST00000568422 SOCS7O14512 581 aa26■■□□□ 1.75
CLN3-231ENST00000568422 SLC52A1Q9NWF4 448 aa26■■□□□ 1.75
CLN3-231ENST00000568422 TET3O43151 1660 aa25.99■■□□□ 1.75
CLN3-231ENST00000568422 ADGRB3O60242 1522 aa25.98■■□□□ 1.75
CLN3-231ENST00000568422 GCC2Q8IWJ2 1684 aa25.96■■□□□ 1.75
CLN3-231ENST00000568422 UNC13BO14795 1591 aa25.95■■□□□ 1.74
CLN3-231ENST00000568422 XIRP1Q702N8 1843 aaKnown RBP25.94■■□□□ 1.74
CLN3-231ENST00000568422 ROCK1Q13464 1354 aa25.94■■□□□ 1.74
CLN3-231ENST00000568422 MED1Q15648 1581 aaPredicted RBP25.9■■□□□ 1.74
CLN3-231ENST00000568422 MYO5BQ9ULV0 1848 aa25.88■■□□□ 1.73
CLN3-231ENST00000568422 KCNA6P17658 529 aa25.87■■□□□ 1.73
CLN3-231ENST00000568422 HDGFP51858 240 aaKnown RBP25.86■■□□□ 1.73
CLN3-231ENST00000568422 IQGAP3Q86VI3 1631 aa25.85■■□□□ 1.73
CLN3-231ENST00000568422 TMEM131LA2VDJ0 1609 aa25.85■■□□□ 1.73
CLN3-231ENST00000568422 E9PCH4 1651 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms