RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 TCOF1Q13428 1488 aaKnown RBP23.75■■□□□ 1.39
CLN3-228ENST00000567804 MAST1Q9Y2H9 1570 aa23.74■■□□□ 1.39
CLN3-228ENST00000567804 KIF3BO15066 747 aa23.74■■□□□ 1.39
CLN3-228ENST00000567804 NCKAP5LQ9HCH0 1330 aa23.74■■□□□ 1.39
CLN3-228ENST00000567804 A2ML1A8K2U0 1454 aa23.74■■□□□ 1.39
CLN3-228ENST00000567804 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
CLN3-228ENST00000567804 PZPP20742 1482 aa23.72■■□□□ 1.39
CLN3-228ENST00000567804 RNF17Q9BXT8 1623 aaKnown RBP23.71■■□□□ 1.39
CLN3-228ENST00000567804 PKD2Q13563 968 aa23.7■■□□□ 1.38
CLN3-228ENST00000567804 ZC3H13Q5T200 1668 aaKnown RBP23.68■■□□□ 1.38
CLN3-228ENST00000567804 TSPY4P0CV99 314 aa23.68■■□□□ 1.38
CLN3-228ENST00000567804 TSPY10P0CW01 314 aa23.68■■□□□ 1.38
CLN3-228ENST00000567804 EIF2AK4Q9P2K8 1649 aaKnown RBP23.68■■□□□ 1.38
CLN3-228ENST00000567804 TNRQ92752 1358 aa23.67■■□□□ 1.38
CLN3-228ENST00000567804 KANK4Q5T7N3 995 aaPredicted RBP23.66■■□□□ 1.38
CLN3-228ENST00000567804 MYOM3Q5VTT5 1437 aa23.66■■□□□ 1.38
CLN3-228ENST00000567804 MIA2Q96PC5 1412 aa23.66■■□□□ 1.38
CLN3-228ENST00000567804 ZNF335Q9H4Z2 1342 aaPredicted RBP23.65■■□□□ 1.38
CLN3-228ENST00000567804 WASHC2CQ9Y4E1 1318 aa23.65■■□□□ 1.38
CLN3-228ENST00000567804 FBXO31Q5XUX0 539 aaPredicted RBP23.65■■□□□ 1.38
CLN3-228ENST00000567804 NEURL4Q96JN8 1562 aa23.64■■□□□ 1.37
CLN3-228ENST00000567804 CROCC2H7BZ55 1655 aa23.63■■□□□ 1.37
CLN3-228ENST00000567804 MROH1Q8NDA8 1641 aa23.62■■□□□ 1.37
CLN3-228ENST00000567804 ABCC3O15438 1527 aa23.61■■□□□ 1.37
CLN3-228ENST00000567804 CEP152O94986 1710 aa23.61■■□□□ 1.37
CLN3-228ENST00000567804 NLRP1Q9C000 1473 aa23.59■■□□□ 1.37
CLN3-228ENST00000567804 UGGT1Q9NYU2 1555 aa23.57■■□□□ 1.36
CLN3-228ENST00000567804 SPATA31D1Q6ZQQ2 1576 aa23.57■■□□□ 1.36
CLN3-228ENST00000567804 PTPN23Q9H3S7 1636 aa23.56■■□□□ 1.36
CLN3-228ENST00000567804 DUOX2Q9NRD8 1548 aa23.56■■□□□ 1.36
CLN3-228ENST00000567804 CFAP65Q6ZU64 1925 aaKnown RBP23.55■■□□□ 1.36
CLN3-228ENST00000567804 DEPDC5O75140 1603 aa23.55■■□□□ 1.36
CLN3-228ENST00000567804 SHANK2Q9UPX8 1470 aa23.53■■□□□ 1.36
CLN3-228ENST00000567804 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLN3-228ENST00000567804 ERVK-7P63135 1459 aa23.51■■□□□ 1.35
CLN3-228ENST00000567804 THEMISQ8N1K5 641 aaPredicted RBP23.5■■□□□ 1.35
CLN3-228ENST00000567804 DISP3Q9P2K9 1392 aa23.5■■□□□ 1.35
CLN3-228ENST00000567804 CPS1P31327 1500 aa23.49■■□□□ 1.35
CLN3-228ENST00000567804 PRDM15P57071 1507 aaPredicted RBP23.49■■□□□ 1.35
CLN3-228ENST00000567804 IQGAP1P46940 1657 aa23.49■■□□□ 1.35
CLN3-228ENST00000567804 ABCC5O15440 1437 aa23.49■■□□□ 1.35
CLN3-228ENST00000567804 MED14O60244 1454 aa23.49■■□□□ 1.35
CLN3-228ENST00000567804 UBR1Q8IWV7 1749 aa23.48■■□□□ 1.35
CLN3-228ENST00000567804 UBAP1LF5GYI3 381 aa23.48■■□□□ 1.35
CLN3-228ENST00000567804 ANKLE2Q86XL3 938 aa23.48■■□□□ 1.35
CLN3-228ENST00000567804 VWDEQ8N2E2 1590 aa23.48■■□□□ 1.35
CLN3-228ENST00000567804 KIF15Q9NS87 1388 aa23.47■■□□□ 1.35
CLN3-228ENST00000567804 APLP2Q06481 763 aa23.46■■□□□ 1.35
CLN3-228ENST00000567804 ERBINQ96RT1 1412 aa23.46■■□□□ 1.35
CLN3-228ENST00000567804 NPHP4O75161 1426 aaPredicted RBP23.45■■□□□ 1.34
CLN3-228ENST00000567804 DAPK1P53355 1430 aa23.45■■□□□ 1.34
CLN3-228ENST00000567804 FGD6Q6ZV73 1430 aa23.44■■□□□ 1.34
CLN3-228ENST00000567804 STRCP1A6NGW2 1772 aa23.41■■□□□ 1.34
CLN3-228ENST00000567804 ARHGAP31Q2M1Z3 1444 aa23.41■■□□□ 1.34
CLN3-228ENST00000567804 ILDR2Q71H61 639 aa23.38■■□□□ 1.33
CLN3-228ENST00000567804 RRP7BPQ9NSQ0 103 aa23.38■■□□□ 1.33
CLN3-228ENST00000567804 PIK3C2BO00750 1634 aa23.35■■□□□ 1.33
CLN3-228ENST00000567804 SYNMO15061 1565 aa23.35■■□□□ 1.33
CLN3-228ENST00000567804 SLIT1O75093 1534 aa23.34■■□□□ 1.33
CLN3-228ENST00000567804 ARHGAP23Q9P227 1491 aa23.33■■□□□ 1.33
CLN3-228ENST00000567804 ANKRD30AQ9BXX3 1397 aa23.33■■□□□ 1.33
CLN3-228ENST00000567804 LMTK2Q8IWU2 1503 aa23.33■■□□□ 1.32
CLN3-228ENST00000567804 KDM5AP29375 1690 aaKnown RBP23.32■■□□□ 1.32
CLN3-228ENST00000567804 SCAF11Q99590 1463 aaKnown RBP23.32■■□□□ 1.32
CLN3-228ENST00000567804 ALKQ9UM73 1620 aa23.32■■□□□ 1.32
CLN3-228ENST00000567804 KANK1Q14678 1352 aa23.31■■□□□ 1.32
CLN3-228ENST00000567804 TOM1O60784 492 aa23.31■■□□□ 1.32
CLN3-228ENST00000567804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLN3-228ENST00000567804 CHIC2Q9UKJ5 165 aa23.3■■□□□ 1.32
CLN3-228ENST00000567804 ADGRL2O95490 1459 aa23.3■■□□□ 1.32
CLN3-228ENST00000567804 LRRC7Q96NW7 1537 aa23.28■■□□□ 1.32
CLN3-228ENST00000567804 SCAF1Q9H7N4 1312 aaKnown RBP23.28■■□□□ 1.32
CLN3-228ENST00000567804 PIP4K2BP78356 416 aa23.27■■□□□ 1.32
CLN3-228ENST00000567804 EFCAB6Q5THR3 1501 aa23.27■■□□□ 1.32
CLN3-228ENST00000567804 XIRP1Q702N8 1843 aaKnown RBP23.25■■□□□ 1.31
CLN3-228ENST00000567804 SOCS7O14512 581 aa23.24■■□□□ 1.31
CLN3-228ENST00000567804 LTKP29376 864 aa23.24■■□□□ 1.31
CLN3-228ENST00000567804 HSPA1LP34931 641 aa23.24■■□□□ 1.31
CLN3-228ENST00000567804 TXNDC2Q86VQ3 553 aa23.23■■□□□ 1.31
CLN3-228ENST00000567804 TMEM2Q9UHN6 1383 aa23.21■■□□□ 1.31
CLN3-228ENST00000567804 MED1Q15648 1581 aaPredicted RBP23.2■■□□□ 1.3
CLN3-228ENST00000567804 NOS1P29475 1434 aa23.2■■□□□ 1.3
CLN3-228ENST00000567804 ADGRB3O60242 1522 aa23.19■■□□□ 1.3
CLN3-228ENST00000567804 FAM50AQ14320 339 aaKnown RBP23.19■■□□□ 1.3
CLN3-228ENST00000567804 EID1Q9Y6B2 187 aa23.19■■□□□ 1.3
CLN3-228ENST00000567804 TET3O43151 1660 aa23.18■■□□□ 1.3
CLN3-228ENST00000567804 ANKRD50Q9ULJ7 1429 aa23.17■■□□□ 1.3
CLN3-228ENST00000567804 IDI1Q13907 227 aa23.17■■□□□ 1.3
CLN3-228ENST00000567804 MYO5BQ9ULV0 1848 aa23.17■■□□□ 1.3
CLN3-228ENST00000567804 GCC2Q8IWJ2 1684 aa23.16■■□□□ 1.3
CLN3-228ENST00000567804 STAG3Q9UJ98 1225 aa23.16■■□□□ 1.3
CLN3-228ENST00000567804 UNC13BO14795 1591 aa23.15■■□□□ 1.3
CLN3-228ENST00000567804 RPRD2Q5VT52 1461 aaKnown RBP23.15■■□□□ 1.3
CLN3-228ENST00000567804 SLC52A1Q9NWF4 448 aa23.09■■□□□ 1.29
CLN3-228ENST00000567804 E9PCH4 1651 aa23.08■■□□□ 1.29
CLN3-228ENST00000567804 NWD1Q149M9 1564 aa23.07■■□□□ 1.28
CLN3-228ENST00000567804 TMEM131LA2VDJ0 1609 aa23.06■■□□□ 1.28
CLN3-228ENST00000567804 IQGAP3Q86VI3 1631 aa23.05■■□□□ 1.28
CLN3-228ENST00000567804 ROCK1Q13464 1354 aa23.03■■□□□ 1.28
CLN3-228ENST00000567804 ZFYVE9O95405 1425 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms