RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 SCAPERQ9BY12 1400 aa23.28■■□□□ 1.32
CMTM3-213ENST00000566756 SPAG9O60271 1321 aaKnown RBP23.28■■□□□ 1.32
CMTM3-213ENST00000566756 GLI2P10070 1586 aa23.27■■□□□ 1.32
CMTM3-213ENST00000566756 AFAP1Q8N556 730 aa23.25■■□□□ 1.31
CMTM3-213ENST00000566756 FOXD1Q16676 465 aa23.25■■□□□ 1.31
CMTM3-213ENST00000566756 ATP7AQ04656 1500 aa23.24■■□□□ 1.31
CMTM3-213ENST00000566756 MAP3K4Q9Y6R4 1608 aa23.24■■□□□ 1.31
CMTM3-213ENST00000566756 CCDC7Q96M83 1385 aa23.23■■□□□ 1.31
CMTM3-213ENST00000566756 MAGI2Q86UL8 1455 aa23.23■■□□□ 1.31
CMTM3-213ENST00000566756 NEO1Q92859 1461 aa23.23■■□□□ 1.31
CMTM3-213ENST00000566756 PKD2Q13563 968 aa23.22■■□□□ 1.31
CMTM3-213ENST00000566756 SPATA31E1Q6ZUB1 1445 aa23.22■■□□□ 1.31
CMTM3-213ENST00000566756 FAM135AQ9P2D6 1515 aa23.22■■□□□ 1.31
CMTM3-213ENST00000566756 ZNF518AQ6AHZ1 1483 aa23.21■■□□□ 1.31
CMTM3-213ENST00000566756 IQGAP3Q86VI3 1631 aa23.21■■□□□ 1.31
CMTM3-213ENST00000566756 KDM5CP41229 1560 aa23.18■■□□□ 1.3
CMTM3-213ENST00000566756 KIDINS220Q9ULH0 1771 aa23.17■■□□□ 1.3
CMTM3-213ENST00000566756 POGZQ7Z3K3 1410 aa23.15■■□□□ 1.3
CMTM3-213ENST00000566756 EIF2AK4Q9P2K8 1649 aaKnown RBP23.15■■□□□ 1.3
CMTM3-213ENST00000566756 NBPF8Q3BBV2 869 aa23.14■■□□□ 1.3
CMTM3-213ENST00000566756 DEPDC5O75140 1603 aa23.14■■□□□ 1.3
CMTM3-213ENST00000566756 DIP2BQ9P265 1576 aa23.14■■□□□ 1.29
CMTM3-213ENST00000566756 MLH3Q9UHC1 1453 aa23.13■■□□□ 1.29
CMTM3-213ENST00000566756 HNRNPUQ00839 825 aaKnown RBP eCLIP23.12■■□□□ 1.29
CMTM3-213ENST00000566756 BCANQ96GW7 911 aa23.12■■□□□ 1.29
CMTM3-213ENST00000566756 PRKRIP1Q9H875 184 aaPredicted RBP23.11■■□□□ 1.29
CMTM3-213ENST00000566756 ERICH6BQ5W0A0 696 aa23.1■■□□□ 1.29
CMTM3-213ENST00000566756 DHX29Q7Z478 1369 aaKnown RBP23.1■■□□□ 1.29
CMTM3-213ENST00000566756 HECW2Q9P2P5 1572 aa23.09■■□□□ 1.29
CMTM3-213ENST00000566756 C11orf95C9JLR9 678 aaPredicted RBP23.09■■□□□ 1.29
CMTM3-213ENST00000566756 ARID4BQ4LE39 1312 aaPredicted RBP23.06■■□□□ 1.28
CMTM3-213ENST00000566756 RICTORQ6R327 1708 aa23.06■■□□□ 1.28
CMTM3-213ENST00000566756 KIF7Q2M1P5 1343 aa23.05■■□□□ 1.28
CMTM3-213ENST00000566756 ATP10AO60312 1499 aa23.05■■□□□ 1.28
CMTM3-213ENST00000566756 VWDEQ8N2E2 1590 aa23.05■■□□□ 1.28
CMTM3-213ENST00000566756 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.05■■□□□ 1.28
CMTM3-213ENST00000566756 UHRF1BP1Q6BDS2 1440 aa23.04■■□□□ 1.28
CMTM3-213ENST00000566756 FAM69CQ0P6D2 419 aa23.03■■□□□ 1.28
CMTM3-213ENST00000566756 MYT1LQ9UL68 1186 aa23.03■■□□□ 1.28
CMTM3-213ENST00000566756 PRDM15P57071 1507 aaPredicted RBP23.03■■□□□ 1.28
CMTM3-213ENST00000566756 A2MP01023 1474 aa23.02■■□□□ 1.28
CMTM3-213ENST00000566756 BCORL1Q5H9F3 1711 aa23.02■■□□□ 1.28
CMTM3-213ENST00000566756 PPRC1Q5VV67 1664 aaKnown RBP23.01■■□□□ 1.27
CMTM3-213ENST00000566756 TET3O43151 1660 aa23■■□□□ 1.27
CMTM3-213ENST00000566756 MROH1Q8NDA8 1641 aa23■■□□□ 1.27
CMTM3-213ENST00000566756 PLA2R1Q13018 1463 aa22.99■■□□□ 1.27
CMTM3-213ENST00000566756 ZBED9Q6R2W3 1325 aa22.99■■□□□ 1.27
CMTM3-213ENST00000566756 KANK1Q14678 1352 aa22.99■■□□□ 1.27
CMTM3-213ENST00000566756 RNF17Q9BXT8 1623 aaKnown RBP22.99■■□□□ 1.27
CMTM3-213ENST00000566756 E9PCH4 1651 aa22.98■■□□□ 1.27
CMTM3-213ENST00000566756 ABCA6Q8N139 1617 aa22.98■■□□□ 1.27
CMTM3-213ENST00000566756 RALGAPBQ86X10 1494 aa22.97■■□□□ 1.27
CMTM3-213ENST00000566756 KIF13AQ9H1H9 1805 aa22.97■■□□□ 1.27
CMTM3-213ENST00000566756 CCDC144AA2RUR9 1427 aa22.97■■□□□ 1.27
CMTM3-213ENST00000566756 FRMPD1Q5SYB0 1578 aa22.96■■□□□ 1.27
CMTM3-213ENST00000566756 KIF3BO15066 747 aa22.96■■□□□ 1.27
CMTM3-213ENST00000566756 USP47Q96K76 1375 aa22.96■■□□□ 1.27
CMTM3-213ENST00000566756 TSPOAP1O95153 1857 aa22.95■■□□□ 1.26
CMTM3-213ENST00000566756 MRS2Q9HD23 443 aa22.95■■□□□ 1.26
CMTM3-213ENST00000566756 CCDC184Q52MB2 194 aa22.94■■□□□ 1.26
CMTM3-213ENST00000566756 ROCK2O75116 1388 aaKnown RBP22.94■■□□□ 1.26
CMTM3-213ENST00000566756 RAPGEF3O95398 923 aa22.93■■□□□ 1.26
CMTM3-213ENST00000566756 ZMYM4Q5VZL5 1548 aa22.93■■□□□ 1.26
CMTM3-213ENST00000566756 DIP2CQ9Y2E4 1556 aa22.93■■□□□ 1.26
CMTM3-213ENST00000566756 LMTK2Q8IWU2 1503 aa22.92■■□□□ 1.26
CMTM3-213ENST00000566756 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
CMTM3-213ENST00000566756 PTPRTO14522 1441 aa22.9■■□□□ 1.26
CMTM3-213ENST00000566756 RBM19Q9Y4C8 960 aaKnown RBP22.9■■□□□ 1.26
CMTM3-213ENST00000566756 ANP32EQ9BTT0 268 aa22.89■■□□□ 1.26
CMTM3-213ENST00000566756 TRPM2O94759 1503 aa22.89■■□□□ 1.25
CMTM3-213ENST00000566756 EFCAB6Q5THR3 1501 aa22.86■■□□□ 1.25
CMTM3-213ENST00000566756 FAM9BQ8IZU0 186 aa22.85■■□□□ 1.25
CMTM3-213ENST00000566756 PPP4R2Q9NY27 417 aa22.85■■□□□ 1.25
CMTM3-213ENST00000566756 CEP152O94986 1710 aa22.85■■□□□ 1.25
CMTM3-213ENST00000566756 KTN1Q86UP2 1357 aaKnown RBP22.82■■□□□ 1.24
CMTM3-213ENST00000566756 YEATS2Q9ULM3 1422 aa22.81■■□□□ 1.24
CMTM3-213ENST00000566756 NEURL4Q96JN8 1562 aa22.81■■□□□ 1.24
CMTM3-213ENST00000566756 SMG6Q86US8 1419 aaKnown RBP22.8■■□□□ 1.24
CMTM3-213ENST00000566756 REREQ9P2R6 1566 aa22.79■■□□□ 1.24
CMTM3-213ENST00000566756 DCAF11Q8TEB1 546 aa22.79■■□□□ 1.24
CMTM3-213ENST00000566756 CLTCL1P53675 1640 aa22.79■■□□□ 1.24
CMTM3-213ENST00000566756 ZC3H13Q5T200 1668 aaKnown RBP22.77■■□□□ 1.24
CMTM3-213ENST00000566756 ABCC3O15438 1527 aa22.76■■□□□ 1.23
CMTM3-213ENST00000566756 CARD11Q9BXL7 1154 aa22.75■■□□□ 1.23
CMTM3-213ENST00000566756 PRAG1Q86YV5 1406 aa22.75■■□□□ 1.23
CMTM3-213ENST00000566756 TRPM1Q7Z4N2 1603 aa22.74■■□□□ 1.23
CMTM3-213ENST00000566756 ZNF326Q5BKZ1 582 aaKnown RBP22.74■■□□□ 1.23
CMTM3-213ENST00000566756 GGT6Q6P531 493 aa22.74■■□□□ 1.23
CMTM3-213ENST00000566756 STAC3Q96MF2 364 aa22.74■■□□□ 1.23
CMTM3-213ENST00000566756 CAMSAP1Q5T5Y3 1602 aa22.73■■□□□ 1.23
CMTM3-213ENST00000566756 FANCIQ9NVI1 1328 aa22.72■■□□□ 1.23
CMTM3-213ENST00000566756 KIF1BO60333 1816 aa22.72■■□□□ 1.23
CMTM3-213ENST00000566756 LAMC1P11047 1609 aa22.72■■□□□ 1.23
CMTM3-213ENST00000566756 AGLP35573 1532 aa22.72■■□□□ 1.23
CMTM3-213ENST00000566756 KDM2AQ9Y2K7 1162 aa22.72■■□□□ 1.23
CMTM3-213ENST00000566756 IRX6P78412 446 aaPredicted RBP22.71■■□□□ 1.23
CMTM3-213ENST00000566756 RGL3Q3MIN7 710 aa22.71■■□□□ 1.23
CMTM3-213ENST00000566756 NPATQ14207 1427 aa22.71■■□□□ 1.23
CMTM3-213ENST00000566756 WASHC2CQ9Y4E1 1318 aa22.7■■□□□ 1.22
CMTM3-213ENST00000566756 RNF123Q5XPI4 1314 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms