RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 WDR7Q9Y4E6 1490 aa8.64□□□□□ -1.03
CLN3-223ENST00000566472 GPRASP1Q5JY77 1395 aa8.63□□□□□ -1.03
CLN3-223ENST00000566472 EIF2AK4Q9P2K8 1649 aaKnown RBP8.63□□□□□ -1.03
CLN3-223ENST00000566472 NEFLP07196 543 aa8.63□□□□□ -1.03
CLN3-223ENST00000566472 PRAG1Q86YV5 1406 aa8.63□□□□□ -1.03
CLN3-223ENST00000566472 PLA2R1Q13018 1463 aa8.62□□□□□ -1.03
CLN3-223ENST00000566472 ABCA9Q8IUA7 1624 aa8.62□□□□□ -1.03
CLN3-223ENST00000566472 DHX29Q7Z478 1369 aaKnown RBP8.61□□□□□ -1.03
CLN3-223ENST00000566472 KTN1Q86UP2 1357 aaKnown RBP8.61□□□□□ -1.03
CLN3-223ENST00000566472 ZFYVE16Q7Z3T8 1539 aa8.61□□□□□ -1.03
CLN3-223ENST00000566472 BCORL1Q5H9F3 1711 aa8.61□□□□□ -1.03
CLN3-223ENST00000566472 TRPM1Q7Z4N2 1603 aa8.61□□□□□ -1.03
CLN3-223ENST00000566472 A2MP01023 1474 aa8.6□□□□□ -1.03
CLN3-223ENST00000566472 CARD11Q9BXL7 1154 aa8.6□□□□□ -1.03
CLN3-223ENST00000566472 TRAPPC8Q9Y2L5 1435 aa8.6□□□□□ -1.03
CLN3-223ENST00000566472 INO80Q9ULG1 1556 aaPredicted RBP8.6□□□□□ -1.03
CLN3-223ENST00000566472 DEPDC5O75140 1603 aa8.59□□□□□ -1.03
CLN3-223ENST00000566472 HNRNPUQ00839 825 aaKnown RBP eCLIP8.59□□□□□ -1.03
CLN3-223ENST00000566472 STAC3Q96MF2 364 aa8.59□□□□□ -1.03
CLN3-223ENST00000566472 NEURL4Q96JN8 1562 aa8.59□□□□□ -1.03
CLN3-223ENST00000566472 TRPM2O94759 1503 aa8.59□□□□□ -1.03
CLN3-223ENST00000566472 PRDM15P57071 1507 aaPredicted RBP8.59□□□□□ -1.03
CLN3-223ENST00000566472 ZBED9Q6R2W3 1325 aa8.58□□□□□ -1.04
CLN3-223ENST00000566472 ERICH6BQ5W0A0 696 aa8.58□□□□□ -1.04
CLN3-223ENST00000566472 MRS2Q9HD23 443 aa8.58□□□□□ -1.04
CLN3-223ENST00000566472 E9PCH4 1651 aa8.58□□□□□ -1.04
CLN3-223ENST00000566472 SPAG9O60271 1321 aaKnown RBP8.57□□□□□ -1.04
CLN3-223ENST00000566472 VWDEQ8N2E2 1590 aa8.57□□□□□ -1.04
CLN3-223ENST00000566472 PTPRTO14522 1441 aa8.57□□□□□ -1.04
CLN3-223ENST00000566472 FKBP8Q14318 412 aa8.57□□□□□ -1.04
CLN3-223ENST00000566472 ZNF326Q5BKZ1 582 aaKnown RBP8.57□□□□□ -1.04
CLN3-223ENST00000566472 DCAF11Q8TEB1 546 aa8.57□□□□□ -1.04
CLN3-223ENST00000566472 ATP7AQ04656 1500 aa8.57□□□□□ -1.04
CLN3-223ENST00000566472 RNF17Q9BXT8 1623 aaKnown RBP8.57□□□□□ -1.04
CLN3-223ENST00000566472 FANCAO15360 1455 aa8.56□□□□□ -1.04
CLN3-223ENST00000566472 COL17A1Q9UMD9 1497 aaPredicted RBP8.56□□□□□ -1.04
CLN3-223ENST00000566472 TET3O43151 1660 aa8.56□□□□□ -1.04
CLN3-223ENST00000566472 KANK1Q14678 1352 aa8.55□□□□□ -1.04
CLN3-223ENST00000566472 CFAP74Q9C0B2 1584 aa8.55□□□□□ -1.04
CLN3-223ENST00000566472 ADGRL1O94910 1474 aa8.54□□□□□ -1.04
CLN3-223ENST00000566472 RALBP1Q15311 655 aa8.54□□□□□ -1.04
CLN3-223ENST00000566472 LMTK2Q8IWU2 1503 aa8.54□□□□□ -1.04
CLN3-223ENST00000566472 ASXL2Q76L83 1435 aa8.54□□□□□ -1.04
CLN3-223ENST00000566472 WASHC2CQ9Y4E1 1318 aa8.54□□□□□ -1.04
CLN3-223ENST00000566472 BRD4O60885 1362 aaPredicted RBP8.53□□□□□ -1.04
CLN3-223ENST00000566472 INSRP06213 1382 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 ST20-MTHFSA0A0A6YYL1 179 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 CCDC184Q52MB2 194 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.53□□□□□ -1.04
CLN3-223ENST00000566472 KDM2AQ9Y2K7 1162 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 MADDQ8WXG6 1647 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 ZMYM4Q5VZL5 1548 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 SCAPERQ9BY12 1400 aa8.53□□□□□ -1.04
CLN3-223ENST00000566472 MYBBP1AQ9BQG0 1328 aaKnown RBP8.52□□□□□ -1.05
CLN3-223ENST00000566472 CEP152O94986 1710 aa8.51□□□□□ -1.05
CLN3-223ENST00000566472 SPHKAPQ2M3C7 1700 aa8.51□□□□□ -1.05
CLN3-223ENST00000566472 ZNF518AQ6AHZ1 1483 aa8.51□□□□□ -1.05
CLN3-223ENST00000566472 MROH1Q8NDA8 1641 aa8.51□□□□□ -1.05
CLN3-223ENST00000566472 SMG6Q86US8 1419 aaKnown RBP8.51□□□□□ -1.05
CLN3-223ENST00000566472 MYOM2P54296 1465 aa8.51□□□□□ -1.05
CLN3-223ENST00000566472 LRPPRCP42704 1394 aaKnown RBP8.5□□□□□ -1.05
CLN3-223ENST00000566472 PARD3Q8TEW0 1356 aa8.5□□□□□ -1.05
CLN3-223ENST00000566472 FAM9BQ8IZU0 186 aa8.5□□□□□ -1.05
CLN3-223ENST00000566472 KIAA1210Q9ULL0 1709 aa8.5□□□□□ -1.05
CLN3-223ENST00000566472 CLTCL1P53675 1640 aa8.5□□□□□ -1.05
CLN3-223ENST00000566472 IQGAP1P46940 1657 aa8.49□□□□□ -1.05
CLN3-223ENST00000566472 EFCAB6Q5THR3 1501 aa8.49□□□□□ -1.05
CLN3-223ENST00000566472 AFAP1Q8N556 730 aa8.49□□□□□ -1.05
CLN3-223ENST00000566472 TSHZ2Q9NRE2 1034 aa8.49□□□□□ -1.05
CLN3-223ENST00000566472 SCAF11Q99590 1463 aaKnown RBP8.49□□□□□ -1.05
CLN3-223ENST00000566472 MLH3Q9UHC1 1453 aa8.49□□□□□ -1.05
CLN3-223ENST00000566472 POGZQ7Z3K3 1410 aa8.48□□□□□ -1.05
CLN3-223ENST00000566472 SLC24A1O60721 1099 aa8.48□□□□□ -1.05
CLN3-223ENST00000566472 TMF1P82094 1093 aa8.48□□□□□ -1.05
CLN3-223ENST00000566472 TESK2Q96S53 571 aa8.48□□□□□ -1.05
CLN3-223ENST00000566472 POLR3GLQ9BT43 218 aa8.48□□□□□ -1.05
CLN3-223ENST00000566472 EIF3AQ14152 1382 aaKnown RBP8.48□□□□□ -1.05
CLN3-223ENST00000566472 NEO1Q92859 1461 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 NPM1P06748 294 aaKnown RBP eCLIP8.47□□□□□ -1.05
CLN3-223ENST00000566472 MYT1Q01538 1121 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 NBPF1Q3BBV0 1214 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 RGL3Q3MIN7 710 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 CDCA8Q53HL2 280 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 NLRP13Q86W25 1043 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 OSCARQ8IYS5 282 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 PNISRQ8TF01 805 aaKnown RBP8.47□□□□□ -1.05
CLN3-223ENST00000566472 BCANQ96GW7 911 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 KIDINS220Q9ULH0 1771 aa8.47□□□□□ -1.05
CLN3-223ENST00000566472 TMC1Q8TDI8 760 aa8.46□□□□□ -1.06
CLN3-223ENST00000566472 NUDCQ9Y266 331 aa8.46□□□□□ -1.06
CLN3-223ENST00000566472 SYNMO15061 1565 aa8.46□□□□□ -1.06
CLN3-223ENST00000566472 DISP3Q9P2K9 1392 aa8.46□□□□□ -1.06
CLN3-223ENST00000566472 NRXN1Q9ULB1 1477 aa8.45□□□□□ -1.06
CLN3-223ENST00000566472 HECW2Q9P2P5 1572 aa8.45□□□□□ -1.06
CLN3-223ENST00000566472 PER1O15534 1290 aaPredicted RBP8.45□□□□□ -1.06
CLN3-223ENST00000566472 PPP4R2Q9NY27 417 aa8.45□□□□□ -1.06
CLN3-223ENST00000566472 RNF123Q5XPI4 1314 aa8.45□□□□□ -1.06
CLN3-223ENST00000566472 CD109Q6YHK3 1445 aa8.45□□□□□ -1.06
CLN3-223ENST00000566472 ADGRB3O60242 1522 aa8.44□□□□□ -1.06
CLN3-223ENST00000566472 MAP3K4Q9Y6R4 1608 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms