RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 ITSN2Q9NZM3 1697 aa15.6■□□□□ 0.09
SMPD3-206ENST00000566009 ROBO1Q9Y6N7 1651 aa15.6■□□□□ 0.09
SMPD3-206ENST00000566009 XIRP1Q702N8 1843 aaKnown RBP15.59■□□□□ 0.09
SMPD3-206ENST00000566009 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.08
SMPD3-206ENST00000566009 LRP6O75581 1613 aa15.57■□□□□ 0.08
SMPD3-206ENST00000566009 FAM135AQ9P2D6 1515 aa15.57■□□□□ 0.08
SMPD3-206ENST00000566009 CDC42BPBQ9Y5S2 1711 aa15.56■□□□□ 0.08
SMPD3-206ENST00000566009 UGGT1Q9NYU2 1555 aa15.55■□□□□ 0.08
SMPD3-206ENST00000566009 SPAG9O60271 1321 aaKnown RBP15.55■□□□□ 0.08
SMPD3-206ENST00000566009 SPATA31A6Q5VVP1 1343 aa15.55■□□□□ 0.08
SMPD3-206ENST00000566009 A2MP01023 1474 aa15.54■□□□□ 0.08
SMPD3-206ENST00000566009 NUTM2BA6NNL0 878 aaPredicted RBP15.54■□□□□ 0.08
SMPD3-206ENST00000566009 NUTM2EB1AL46 878 aaPredicted RBP15.54■□□□□ 0.08
SMPD3-206ENST00000566009 NUTM2DQ5VT03 806 aaPredicted RBP15.54■□□□□ 0.08
SMPD3-206ENST00000566009 NUTM2AQ8IVF1 878 aaPredicted RBP15.54■□□□□ 0.08
SMPD3-206ENST00000566009 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
SMPD3-206ENST00000566009 SAMD9LQ8IVG5 1584 aa15.53■□□□□ 0.08
SMPD3-206ENST00000566009 PLXNC1O60486 1568 aa15.53■□□□□ 0.08
SMPD3-206ENST00000566009 KDM5DQ9BY66 1539 aa15.52■□□□□ 0.07
SMPD3-206ENST00000566009 TROQ12816 1431 aaPredicted RBP15.51■□□□□ 0.07
SMPD3-206ENST00000566009 MIA2Q96PC5 1412 aa15.51■□□□□ 0.07
SMPD3-206ENST00000566009 PHLPP1O60346 1717 aa15.51■□□□□ 0.07
SMPD3-206ENST00000566009 NLRP1Q9C000 1473 aa15.51■□□□□ 0.07
SMPD3-206ENST00000566009 RGS12O14924 1447 aa15.5■□□□□ 0.07
SMPD3-206ENST00000566009 TMEM94Q12767 1356 aa15.49■□□□□ 0.07
SMPD3-206ENST00000566009 ZC3H13Q5T200 1668 aaKnown RBP15.49■□□□□ 0.07
SMPD3-206ENST00000566009 PZPP20742 1482 aa15.48■□□□□ 0.07
SMPD3-206ENST00000566009 CLIP1P30622 1438 aa15.48■□□□□ 0.07
SMPD3-206ENST00000566009 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
SMPD3-206ENST00000566009 HNRNPMP52272 730 aaKnown RBP eCLIP15.46■□□□□ 0.07
SMPD3-206ENST00000566009 RBM6P78332 1123 aaKnown RBP15.46■□□□□ 0.07
SMPD3-206ENST00000566009 SLAIN2Q9P270 581 aa15.46■□□□□ 0.07
SMPD3-206ENST00000566009 FGD6Q6ZV73 1430 aa15.45■□□□□ 0.06
SMPD3-206ENST00000566009 ATP7AQ04656 1500 aa15.45■□□□□ 0.06
SMPD3-206ENST00000566009 ZNF777Q9ULD5 760 aaPredicted RBP15.45■□□□□ 0.06
SMPD3-206ENST00000566009 PREX2Q70Z35 1606 aa15.45■□□□□ 0.06
SMPD3-206ENST00000566009 ATAD2Q6PL18 1390 aa15.45■□□□□ 0.06
SMPD3-206ENST00000566009 AFF2P51816 1311 aa15.44■□□□□ 0.06
SMPD3-206ENST00000566009 COL16A1Q07092 1604 aaPredicted RBP15.43■□□□□ 0.06
SMPD3-206ENST00000566009 QTRT2Q9H974 415 aaKnown RBP15.43■□□□□ 0.06
SMPD3-206ENST00000566009 PROSER2Q86WR7 435 aaPredicted RBP15.42■□□□□ 0.06
SMPD3-206ENST00000566009 LTKP29376 864 aa15.41■□□□□ 0.06
SMPD3-206ENST00000566009 MAP3K1Q13233 1512 aa15.4■□□□□ 0.06
SMPD3-206ENST00000566009 TXNDC2Q86VQ3 553 aa15.4■□□□□ 0.06
SMPD3-206ENST00000566009 WASHC2CQ9Y4E1 1318 aa15.4■□□□□ 0.06
SMPD3-206ENST00000566009 SCAF11Q99590 1463 aaKnown RBP15.4■□□□□ 0.06
SMPD3-206ENST00000566009 SYCP2Q9BX26 1530 aa15.38■□□□□ 0.05
SMPD3-206ENST00000566009 INO80Q9ULG1 1556 aaPredicted RBP15.38■□□□□ 0.05
SMPD3-206ENST00000566009 KCNA6P17658 529 aa15.38■□□□□ 0.05
SMPD3-206ENST00000566009 YY1P25490 414 aa15.37■□□□□ 0.05
SMPD3-206ENST00000566009 CCDC125Q86Z20 511 aa15.37■□□□□ 0.05
SMPD3-206ENST00000566009 MSH6P52701 1360 aa15.36■□□□□ 0.05
SMPD3-206ENST00000566009 LRP5O75197 1615 aa15.36■□□□□ 0.05
SMPD3-206ENST00000566009 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
SMPD3-206ENST00000566009 KIF3BO15066 747 aa15.35■□□□□ 0.05
SMPD3-206ENST00000566009 NGLY1Q96IV0 654 aa15.35■□□□□ 0.05
SMPD3-206ENST00000566009 SHPRHQ149N8 1683 aa15.35■□□□□ 0.05
SMPD3-206ENST00000566009 ADGBQ8N7X0 1667 aa15.33■□□□□ 0.04
SMPD3-206ENST00000566009 CDC42BPAQ5VT25 1732 aa15.32■□□□□ 0.04
SMPD3-206ENST00000566009 DHX29Q7Z478 1369 aaKnown RBP15.32■□□□□ 0.04
SMPD3-206ENST00000566009 CHIC1Q5VXU3 224 aa15.31■□□□□ 0.04
SMPD3-206ENST00000566009 C8orf37Q96NL8 207 aa15.31■□□□□ 0.04
SMPD3-206ENST00000566009 EID1Q9Y6B2 187 aa15.31■□□□□ 0.04
SMPD3-206ENST00000566009 FMN1Q68DA7 1419 aa15.31■□□□□ 0.04
SMPD3-206ENST00000566009 KIAA1107Q9UPP5 1409 aa15.31■□□□□ 0.04
SMPD3-206ENST00000566009 PRDM15P57071 1507 aaPredicted RBP15.31■□□□□ 0.04
SMPD3-206ENST00000566009 ARHGAP23Q9P227 1491 aa15.29■□□□□ 0.04
SMPD3-206ENST00000566009 TIAM1Q13009 1591 aa15.28■□□□□ 0.04
SMPD3-206ENST00000566009 NCOA2Q15596 1464 aa15.28■□□□□ 0.04
SMPD3-206ENST00000566009 SLIT1O75093 1534 aa15.27■□□□□ 0.04
SMPD3-206ENST00000566009 UBR1Q8IWV7 1749 aa15.26■□□□□ 0.03
SMPD3-206ENST00000566009 AHDC1Q5TGY3 1603 aaPredicted RBP15.26■□□□□ 0.03
SMPD3-206ENST00000566009 SLC26A8Q96RN1 970 aa15.26■□□□□ 0.03
SMPD3-206ENST00000566009 ABCC3O15438 1527 aa15.25■□□□□ 0.03
SMPD3-206ENST00000566009 PLEKHH2Q8IVE3 1493 aa15.25■□□□□ 0.03
SMPD3-206ENST00000566009 GPATCH8Q9UKJ3 1502 aaKnown RBP15.24■□□□□ 0.03
SMPD3-206ENST00000566009 DIP2AQ14689 1571 aa15.24■□□□□ 0.03
SMPD3-206ENST00000566009 NWD1Q149M9 1564 aa15.24■□□□□ 0.03
SMPD3-206ENST00000566009 NKTRP30414 1462 aaKnown RBP15.23■□□□□ 0.03
SMPD3-206ENST00000566009 LRRIQ1Q96JM4 1722 aa15.23■□□□□ 0.03
SMPD3-206ENST00000566009 HRCP23327 699 aa15.22■□□□□ 0.03
SMPD3-206ENST00000566009 DEFB132Q7Z7B7 95 aa15.22■□□□□ 0.03
SMPD3-206ENST00000566009 CFDP1Q9UEE9 299 aaPredicted RBP15.22■□□□□ 0.03
SMPD3-206ENST00000566009 ERVK-7P63135 1459 aa15.21■□□□□ 0.03
SMPD3-206ENST00000566009 SENP3-EIF4A1A0A087X0R7 540 aa15.21■□□□□ 0.03
SMPD3-206ENST00000566009 RTEL1-TNFRSF6BF6WH68 1400 aa15.2■□□□□ 0.02
SMPD3-206ENST00000566009 PSDA5PKW4 1024 aaPredicted RBP15.2■□□□□ 0.02
SMPD3-206ENST00000566009 KDM5AP29375 1690 aaKnown RBP15.19■□□□□ 0.02
SMPD3-206ENST00000566009 NHSL1Q5SYE7 1610 aa15.19■□□□□ 0.02
SMPD3-206ENST00000566009 TRPC5Q9UL62 973 aaPredicted RBP15.19■□□□□ 0.02
SMPD3-206ENST00000566009 EP400Q96L91 3159 aa15.19■□□□□ 0.02
SMPD3-206ENST00000566009 TMEM2Q9UHN6 1383 aa15.18■□□□□ 0.02
SMPD3-206ENST00000566009 USP21Q9UK80 565 aa15.17■□□□□ 0.02
SMPD3-206ENST00000566009 BLMP54132 1417 aaPredicted RBP15.17■□□□□ 0.02
SMPD3-206ENST00000566009 TET3O43151 1660 aa15.16■□□□□ 0.02
SMPD3-206ENST00000566009 BRINP3Q76B58 766 aa15.16■□□□□ 0.02
SMPD3-206ENST00000566009 CADPS2Q86UW7 1296 aa15.16■□□□□ 0.02
SMPD3-206ENST00000566009 SETD5Q9C0A6 1442 aa15.16■□□□□ 0.02
SMPD3-206ENST00000566009 ADAMTS2O95450 1211 aa15.15■□□□□ 0.02
SMPD3-206ENST00000566009 LRRC59Q96AG4 307 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms