RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 TSPY4P0CV99 314 aa13.64□□□□□ -0.23
CAPN3-213ENST00000565173 TSPY10P0CW01 314 aa13.64□□□□□ -0.23
CAPN3-213ENST00000565173 PKD2Q13563 968 aa13.64□□□□□ -0.23
CAPN3-213ENST00000565173 MAP3K1Q13233 1512 aa13.64□□□□□ -0.23
CAPN3-213ENST00000565173 WASHC2CQ9Y4E1 1318 aa13.63□□□□□ -0.23
CAPN3-213ENST00000565173 A2ML1A8K2U0 1454 aa13.62□□□□□ -0.23
CAPN3-213ENST00000565173 ZNF335Q9H4Z2 1342 aaPredicted RBP13.62□□□□□ -0.23
CAPN3-213ENST00000565173 PZPP20742 1482 aa13.61□□□□□ -0.23
CAPN3-213ENST00000565173 DNMT1P26358 1616 aaKnown RBP13.61□□□□□ -0.23
CAPN3-213ENST00000565173 KDM5DQ9BY66 1539 aa13.61□□□□□ -0.23
CAPN3-213ENST00000565173 FAM135AQ9P2D6 1515 aa13.61□□□□□ -0.23
CAPN3-213ENST00000565173 IQSEC2Q5JU85 1478 aa13.61□□□□□ -0.23
CAPN3-213ENST00000565173 TNRQ92752 1358 aa13.59□□□□□ -0.23
CAPN3-213ENST00000565173 MAST1Q9Y2H9 1570 aa13.59□□□□□ -0.23
CAPN3-213ENST00000565173 MIA2Q96PC5 1412 aa13.59□□□□□ -0.23
CAPN3-213ENST00000565173 MYOM3Q5VTT5 1437 aa13.58□□□□□ -0.24
CAPN3-213ENST00000565173 RNF17Q9BXT8 1623 aaKnown RBP13.57□□□□□ -0.24
CAPN3-213ENST00000565173 ABCC3O15438 1527 aa13.54□□□□□ -0.24
CAPN3-213ENST00000565173 NEURL4Q96JN8 1562 aa13.54□□□□□ -0.24
CAPN3-213ENST00000565173 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.54□□□□□ -0.24
CAPN3-213ENST00000565173 NLRP1Q9C000 1473 aa13.54□□□□□ -0.24
CAPN3-213ENST00000565173 THEMISQ8N1K5 641 aaPredicted RBP13.53□□□□□ -0.24
CAPN3-213ENST00000565173 MROH1Q8NDA8 1641 aa13.53□□□□□ -0.24
CAPN3-213ENST00000565173 EIF2AK4Q9P2K8 1649 aaKnown RBP13.53□□□□□ -0.24
CAPN3-213ENST00000565173 ANKLE2Q86XL3 938 aa13.52□□□□□ -0.25
CAPN3-213ENST00000565173 ABCC5O15440 1437 aa13.52□□□□□ -0.25
CAPN3-213ENST00000565173 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
CAPN3-213ENST00000565173 UGGT1Q9NYU2 1555 aa13.51□□□□□ -0.25
CAPN3-213ENST00000565173 POLR1AO95602 1720 aaPredicted RBP13.5□□□□□ -0.25
CAPN3-213ENST00000565173 ZC3H13Q5T200 1668 aaKnown RBP13.5□□□□□ -0.25
CAPN3-213ENST00000565173 DUOX2Q9NRD8 1548 aa13.5□□□□□ -0.25
CAPN3-213ENST00000565173 UBAP1LF5GYI3 381 aa13.5□□□□□ -0.25
CAPN3-213ENST00000565173 MED14O60244 1454 aa13.49□□□□□ -0.25
CAPN3-213ENST00000565173 ERVK-7P63135 1459 aa13.49□□□□□ -0.25
CAPN3-213ENST00000565173 DISP3Q9P2K9 1392 aa13.49□□□□□ -0.25
CAPN3-213ENST00000565173 ILDR2Q71H61 639 aa13.49□□□□□ -0.25
CAPN3-213ENST00000565173 RRP7BPQ9NSQ0 103 aa13.49□□□□□ -0.25
CAPN3-213ENST00000565173 SHANK2Q9UPX8 1470 aa13.48□□□□□ -0.25
CAPN3-213ENST00000565173 KIF15Q9NS87 1388 aa13.48□□□□□ -0.25
CAPN3-213ENST00000565173 APLP2Q06481 763 aa13.48□□□□□ -0.25
CAPN3-213ENST00000565173 PTPN23Q9H3S7 1636 aa13.48□□□□□ -0.25
CAPN3-213ENST00000565173 DEPDC5O75140 1603 aa13.47□□□□□ -0.25
CAPN3-213ENST00000565173 VWDEQ8N2E2 1590 aa13.47□□□□□ -0.25
CAPN3-213ENST00000565173 NPHP4O75161 1426 aaPredicted RBP13.47□□□□□ -0.25
CAPN3-213ENST00000565173 DAPK1P53355 1430 aa13.47□□□□□ -0.25
CAPN3-213ENST00000565173 FGD6Q6ZV73 1430 aa13.47□□□□□ -0.25
CAPN3-213ENST00000565173 CPS1P31327 1500 aa13.46□□□□□ -0.25
CAPN3-213ENST00000565173 CEP152O94986 1710 aa13.46□□□□□ -0.25
CAPN3-213ENST00000565173 CROCC2H7BZ55 1655 aa13.46□□□□□ -0.26
CAPN3-213ENST00000565173 ARHGAP31Q2M1Z3 1444 aa13.46□□□□□ -0.26
CAPN3-213ENST00000565173 ERBINQ96RT1 1412 aa13.46□□□□□ -0.26
CAPN3-213ENST00000565173 PRDM15P57071 1507 aaPredicted RBP13.45□□□□□ -0.26
CAPN3-213ENST00000565173 CFAP65Q6ZU64 1925 aaKnown RBP13.43□□□□□ -0.26
CAPN3-213ENST00000565173 UBR1Q8IWV7 1749 aa13.42□□□□□ -0.26
CAPN3-213ENST00000565173 LTKP29376 864 aa13.42□□□□□ -0.26
CAPN3-213ENST00000565173 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.42□□□□□ -0.26
CAPN3-213ENST00000565173 CHIC2Q9UKJ5 165 aa13.42□□□□□ -0.26
CAPN3-213ENST00000565173 IQGAP1P46940 1657 aa13.42□□□□□ -0.26
CAPN3-213ENST00000565173 ANKRD30AQ9BXX3 1397 aa13.41□□□□□ -0.26
CAPN3-213ENST00000565173 ARHGAP23Q9P227 1491 aa13.41□□□□□ -0.26
CAPN3-213ENST00000565173 TOM1O60784 492 aa13.4□□□□□ -0.26
CAPN3-213ENST00000565173 PIP4K2BP78356 416 aa13.4□□□□□ -0.26
CAPN3-213ENST00000565173 STRCP1A6NGW2 1772 aa13.4□□□□□ -0.26
CAPN3-213ENST00000565173 SLIT1O75093 1534 aa13.39□□□□□ -0.27
CAPN3-213ENST00000565173 ALKQ9UM73 1620 aa13.39□□□□□ -0.27
CAPN3-213ENST00000565173 HSPA1LP34931 641 aa13.39□□□□□ -0.27
CAPN3-213ENST00000565173 LMTK2Q8IWU2 1503 aa13.39□□□□□ -0.27
CAPN3-213ENST00000565173 SCAF11Q99590 1463 aaKnown RBP13.38□□□□□ -0.27
CAPN3-213ENST00000565173 TXNDC2Q86VQ3 553 aa13.38□□□□□ -0.27
CAPN3-213ENST00000565173 LRRC7Q96NW7 1537 aa13.38□□□□□ -0.27
CAPN3-213ENST00000565173 ADGRL2O95490 1459 aa13.37□□□□□ -0.27
CAPN3-213ENST00000565173 KANK1Q14678 1352 aa13.37□□□□□ -0.27
CAPN3-213ENST00000565173 SOCS7O14512 581 aa13.37□□□□□ -0.27
CAPN3-213ENST00000565173 IDI1Q13907 227 aa13.37□□□□□ -0.27
CAPN3-213ENST00000565173 SCAF1Q9H7N4 1312 aaKnown RBP13.37□□□□□ -0.27
CAPN3-213ENST00000565173 PIK3C2BO00750 1634 aa13.35□□□□□ -0.27
CAPN3-213ENST00000565173 TMEM2Q9UHN6 1383 aa13.35□□□□□ -0.27
CAPN3-213ENST00000565173 NOS1P29475 1434 aa13.34□□□□□ -0.27
CAPN3-213ENST00000565173 FAM50AQ14320 339 aaKnown RBP13.34□□□□□ -0.27
CAPN3-213ENST00000565173 EID1Q9Y6B2 187 aa13.34□□□□□ -0.27
CAPN3-213ENST00000565173 SYNMO15061 1565 aa13.33□□□□□ -0.28
CAPN3-213ENST00000565173 KDM5AP29375 1690 aaKnown RBP13.32□□□□□ -0.28
CAPN3-213ENST00000565173 EFCAB6Q5THR3 1501 aa13.32□□□□□ -0.28
CAPN3-213ENST00000565173 ANKRD50Q9ULJ7 1429 aa13.31□□□□□ -0.28
CAPN3-213ENST00000565173 STAG3Q9UJ98 1225 aa13.31□□□□□ -0.28
CAPN3-213ENST00000565173 SLC52A1Q9NWF4 448 aa13.3□□□□□ -0.28
CAPN3-213ENST00000565173 TET3O43151 1660 aa13.3□□□□□ -0.28
CAPN3-213ENST00000565173 RPRD2Q5VT52 1461 aaKnown RBP13.29□□□□□ -0.28
CAPN3-213ENST00000565173 XIRP1Q702N8 1843 aaKnown RBP13.28□□□□□ -0.28
CAPN3-213ENST00000565173 SLC26A8Q96RN1 970 aa13.27□□□□□ -0.29
CAPN3-213ENST00000565173 ADGRB3O60242 1522 aa13.27□□□□□ -0.29
CAPN3-213ENST00000565173 MED1Q15648 1581 aaPredicted RBP13.27□□□□□ -0.29
CAPN3-213ENST00000565173 KCNA6P17658 529 aa13.26□□□□□ -0.29
CAPN3-213ENST00000565173 ROCK1Q13464 1354 aa13.25□□□□□ -0.29
CAPN3-213ENST00000565173 ZFYVE9O95405 1425 aa13.24□□□□□ -0.29
CAPN3-213ENST00000565173 UNC13BO14795 1591 aa13.24□□□□□ -0.29
CAPN3-213ENST00000565173 TMEM94Q12767 1356 aa13.23□□□□□ -0.29
CAPN3-213ENST00000565173 SENP3Q9H4L4 574 aaPredicted RBP13.23□□□□□ -0.29
CAPN3-213ENST00000565173 RBM33Q96EV2 1170 aaKnown RBP13.22□□□□□ -0.29
CAPN3-213ENST00000565173 TMEM131LA2VDJ0 1609 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms