RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MYO3AQ8NEV4 1616 aa27.14■■□□□ 1.94
VPS9D1-203ENST00000563798 KDM5DQ9BY66 1539 aa27.12■■□□□ 1.93
VPS9D1-203ENST00000563798 PLA2R1Q13018 1463 aa27.12■■□□□ 1.93
VPS9D1-203ENST00000563798 CEP170BQ9Y4F5 1589 aaPredicted RBP27.11■■□□□ 1.93
VPS9D1-203ENST00000563798 PZPP20742 1482 aa27.09■■□□□ 1.93
VPS9D1-203ENST00000563798 APLP2Q06481 763 aa27.07■■□□□ 1.92
VPS9D1-203ENST00000563798 WASHC2CQ9Y4E1 1318 aa27.07■■□□□ 1.92
VPS9D1-203ENST00000563798 A2ML1A8K2U0 1454 aa27.06■■□□□ 1.92
VPS9D1-203ENST00000563798 TCOF1Q13428 1488 aaKnown RBP27.06■■□□□ 1.92
VPS9D1-203ENST00000563798 RNF17Q9BXT8 1623 aaKnown RBP27.05■■□□□ 1.92
VPS9D1-203ENST00000563798 PKD2Q13563 968 aa27.05■■□□□ 1.92
VPS9D1-203ENST00000563798 LTBP4Q8N2S1 1624 aa27.04■■□□□ 1.92
VPS9D1-203ENST00000563798 EIF2AK4Q9P2K8 1649 aaKnown RBP27.04■■□□□ 1.92
VPS9D1-203ENST00000563798 TNRQ92752 1358 aa27.02■■□□□ 1.92
VPS9D1-203ENST00000563798 FBXO31Q5XUX0 539 aaPredicted RBP27.02■■□□□ 1.92
VPS9D1-203ENST00000563798 NCKAP5LQ9HCH0 1330 aa27.01■■□□□ 1.91
VPS9D1-203ENST00000563798 SHANK2Q9UPX8 1470 aa27■■□□□ 1.91
VPS9D1-203ENST00000563798 DNMT1P26358 1616 aaKnown RBP27■■□□□ 1.91
VPS9D1-203ENST00000563798 DUOX2Q9NRD8 1548 aa26.99■■□□□ 1.91
VPS9D1-203ENST00000563798 ABCC5O15440 1437 aa26.99■■□□□ 1.91
VPS9D1-203ENST00000563798 PTPN23Q9H3S7 1636 aa26.98■■□□□ 1.91
VPS9D1-203ENST00000563798 IQSEC2Q5JU85 1478 aa26.97■■□□□ 1.91
VPS9D1-203ENST00000563798 ZC3H13Q5T200 1668 aaKnown RBP26.97■■□□□ 1.91
VPS9D1-203ENST00000563798 ABCC3O15438 1527 aa26.96■■□□□ 1.91
VPS9D1-203ENST00000563798 FGD6Q6ZV73 1430 aa26.96■■□□□ 1.91
VPS9D1-203ENST00000563798 MROH1Q8NDA8 1641 aa26.95■■□□□ 1.91
VPS9D1-203ENST00000563798 NLRP1Q9C000 1473 aa26.94■■□□□ 1.9
VPS9D1-203ENST00000563798 CROCC2H7BZ55 1655 aa26.94■■□□□ 1.9
VPS9D1-203ENST00000563798 DAPK1P53355 1430 aa26.92■■□□□ 1.9
VPS9D1-203ENST00000563798 KIF15Q9NS87 1388 aa26.91■■□□□ 1.9
VPS9D1-203ENST00000563798 ERBINQ96RT1 1412 aa26.9■■□□□ 1.9
VPS9D1-203ENST00000563798 SPATA31D1Q6ZQQ2 1576 aa26.9■■□□□ 1.9
VPS9D1-203ENST00000563798 THEMISQ8N1K5 641 aaPredicted RBP26.87■■□□□ 1.89
VPS9D1-203ENST00000563798 ZNF335Q9H4Z2 1342 aaPredicted RBP26.87■■□□□ 1.89
VPS9D1-203ENST00000563798 PRDM15P57071 1507 aaPredicted RBP26.85■■□□□ 1.89
VPS9D1-203ENST00000563798 RRP7BPQ9NSQ0 103 aa26.85■■□□□ 1.89
VPS9D1-203ENST00000563798 ERVK-7P63135 1459 aa26.85■■□□□ 1.89
VPS9D1-203ENST00000563798 UGGT1Q9NYU2 1555 aa26.84■■□□□ 1.89
VPS9D1-203ENST00000563798 NEURL4Q96JN8 1562 aa26.84■■□□□ 1.89
VPS9D1-203ENST00000563798 ARHGAP31Q2M1Z3 1444 aa26.83■■□□□ 1.89
VPS9D1-203ENST00000563798 POLR1AO95602 1720 aaPredicted RBP26.83■■□□□ 1.89
VPS9D1-203ENST00000563798 ANKLE2Q86XL3 938 aa26.82■■□□□ 1.88
VPS9D1-203ENST00000563798 ANKRD30AQ9BXX3 1397 aa26.82■■□□□ 1.88
VPS9D1-203ENST00000563798 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.82■■□□□ 1.883e-7■□□□□ 10
VPS9D1-203ENST00000563798 DEPDC5O75140 1603 aa26.81■■□□□ 1.88
VPS9D1-203ENST00000563798 CEP152O94986 1710 aa26.8■■□□□ 1.88
VPS9D1-203ENST00000563798 MED14O60244 1454 aa26.8■■□□□ 1.88
VPS9D1-203ENST00000563798 ADGRL2O95490 1459 aa26.77■■□□□ 1.88
VPS9D1-203ENST00000563798 VWDEQ8N2E2 1590 aa26.73■■□□□ 1.87
VPS9D1-203ENST00000563798 CHIC2Q9UKJ5 165 aa26.73■■□□□ 1.87
VPS9D1-203ENST00000563798 LMTK2Q8IWU2 1503 aa26.73■■□□□ 1.87
VPS9D1-203ENST00000563798 NPHP4O75161 1426 aaPredicted RBP26.73■■□□□ 1.87
VPS9D1-203ENST00000563798 KANK1Q14678 1352 aa26.72■■□□□ 1.87
VPS9D1-203ENST00000563798 CPS1P31327 1500 aa26.7■■□□□ 1.87
VPS9D1-203ENST00000563798 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.69■■□□□ 1.864e-9■■■■□ 22.8
VPS9D1-203ENST00000563798 UBR1Q8IWV7 1749 aa26.68■■□□□ 1.86
VPS9D1-203ENST00000563798 FAM50AQ14320 339 aaKnown RBP26.66■■□□□ 1.86
VPS9D1-203ENST00000563798 ARHGAP23Q9P227 1491 aa26.65■■□□□ 1.86
VPS9D1-203ENST00000563798 CFAP65Q6ZU64 1925 aaKnown RBP26.65■■□□□ 1.86
VPS9D1-203ENST00000563798 SLIT1O75093 1534 aa26.65■■□□□ 1.86
VPS9D1-203ENST00000563798 IQGAP1P46940 1657 aa26.64■■□□□ 1.86
VPS9D1-203ENST00000563798 UBAP1LF5GYI3 381 aa26.63■■□□□ 1.85
VPS9D1-203ENST00000563798 ANKRD50Q9ULJ7 1429 aa26.62■■□□□ 1.85
VPS9D1-203ENST00000563798 SCAF11Q99590 1463 aaKnown RBP26.6■■□□□ 1.85
VPS9D1-203ENST00000563798 EFCAB6Q5THR3 1501 aa26.6■■□□□ 1.85
VPS9D1-203ENST00000563798 NOS1P29475 1434 aa26.59■■□□□ 1.85
VPS9D1-203ENST00000563798 KDM5AP29375 1690 aaKnown RBP26.59■■□□□ 1.85
VPS9D1-203ENST00000563798 LTKP29376 864 aa26.57■■□□□ 1.84
VPS9D1-203ENST00000563798 PIK3C2BO00750 1634 aa26.57■■□□□ 1.84
VPS9D1-203ENST00000563798 ROCK1Q13464 1354 aa26.56■■□□□ 1.84
VPS9D1-203ENST00000563798 TXNDC2Q86VQ3 553 aa26.55■■□□□ 1.84
VPS9D1-203ENST00000563798 TMEM2Q9UHN6 1383 aa26.55■■□□□ 1.84
VPS9D1-203ENST00000563798 RPRD2Q5VT52 1461 aaKnown RBP26.55■■□□□ 1.84
VPS9D1-203ENST00000563798 SYNMO15061 1565 aa26.54■■□□□ 1.84
VPS9D1-203ENST00000563798 IDI1Q13907 227 aa26.54■■□□□ 1.84
VPS9D1-203ENST00000563798 TOM1O60784 492 aa26.51■■□□□ 1.83
VPS9D1-203ENST00000563798 SLC52A1Q9NWF4 448 aa26.51■■□□□ 1.83
VPS9D1-203ENST00000563798 EID1Q9Y6B2 187 aa26.51■■□□□ 1.83
VPS9D1-203ENST00000563798 STRCP1A6NGW2 1772 aa26.5■■□□□ 1.83
VPS9D1-203ENST00000563798 UNC13BO14795 1591 aa26.49■■□□□ 1.83
VPS9D1-203ENST00000563798 LRRC7Q96NW7 1537 aa26.49■■□□□ 1.83
VPS9D1-203ENST00000563798 TET3O43151 1660 aa26.47■■□□□ 1.83
VPS9D1-203ENST00000563798 STAG3Q9UJ98 1225 aa26.47■■□□□ 1.83
VPS9D1-203ENST00000563798 DISP3Q9P2K9 1392 aa26.46■■□□□ 1.83
VPS9D1-203ENST00000563798 ADGRB3O60242 1522 aa26.44■■□□□ 1.82
VPS9D1-203ENST00000563798 ALKQ9UM73 1620 aa26.44■■□□□ 1.82
VPS9D1-203ENST00000563798 GCC2Q8IWJ2 1684 aa26.41■■□□□ 1.82
VPS9D1-203ENST00000563798 PIP4K2BP78356 416 aa26.38■■□□□ 1.81
VPS9D1-203ENST00000563798 IQGAP3Q86VI3 1631 aa26.37■■□□□ 1.81
VPS9D1-203ENST00000563798 HSPA1LP34931 641 aa26.36■■□□□ 1.81
VPS9D1-203ENST00000563798 ZFYVE9O95405 1425 aa26.34■■□□□ 1.81
VPS9D1-203ENST00000563798 PPARGC1BQ86YN6 1023 aaKnown RBP26.34■■□□□ 1.81
VPS9D1-203ENST00000563798 E9PCH4 1651 aa26.34■■□□□ 1.81
VPS9D1-203ENST00000563798 SCAF1Q9H7N4 1312 aaKnown RBP26.34■■□□□ 1.81
VPS9D1-203ENST00000563798 SOCS7O14512 581 aa26.33■■□□□ 1.81
VPS9D1-203ENST00000563798 TMEM131LA2VDJ0 1609 aa26.32■■□□□ 1.8
VPS9D1-203ENST00000563798 KCNA6P17658 529 aa26.32■■□□□ 1.8
VPS9D1-203ENST00000563798 RRBP1Q9P2E9 1410 aaKnown RBP26.31■■□□□ 1.8
VPS9D1-203ENST00000563798 ILDR2Q71H61 639 aa26.31■■□□□ 1.8
VPS9D1-203ENST00000563798 NUP155O75694 1391 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms