RNA–Protein interactions for RNA: ENST00000563184.1

LINC00557-201, long intergenic non-protein coding RNA 557, humanhuman

BASIC

Gene LINC00557, Length 1,279 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00557-201ENST00000563184 FOSBP53539 338 aa12.4□□□□□ -0.42
LINC00557-201ENST00000563184 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
LINC00557-201ENST00000563184 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
LINC00557-201ENST00000563184 CDHR5Q9HBB8 845 aa12.4□□□□□ -0.42
LINC00557-201ENST00000563184 TYW1BQ6NUM6 668 aa12.39□□□□□ -0.43
LINC00557-201ENST00000563184 LHX6Q9UPM6 363 aa12.38□□□□□ -0.43
LINC00557-201ENST00000563184 FCHSD2O94868 740 aa12.37□□□□□ -0.43
LINC00557-201ENST00000563184 PTGDRQ13258 359 aa12.37□□□□□ -0.43
LINC00557-201ENST00000563184 RBM33Q96EV2 1170 aaKnown RBP12.37□□□□□ -0.43
LINC00557-201ENST00000563184 FECHP22830 423 aa12.36□□□□□ -0.43
LINC00557-201ENST00000563184 TSR1Q2NL82 804 aaKnown RBP12.36□□□□□ -0.43
LINC00557-201ENST00000563184 NPDC1Q9NQX5 325 aaPredicted RBP12.36□□□□□ -0.43
LINC00557-201ENST00000563184 GNPATO15228 680 aa12.35□□□□□ -0.43
LINC00557-201ENST00000563184 MAP3K7O43318 606 aa12.35□□□□□ -0.43
LINC00557-201ENST00000563184 BRPF1P55201 1214 aaPredicted RBP12.35□□□□□ -0.43
LINC00557-201ENST00000563184 HIC1Q14526 733 aa12.35□□□□□ -0.43
LINC00557-201ENST00000563184 KRI1Q8N9T8 703 aaKnown RBP12.35□□□□□ -0.43
LINC00557-201ENST00000563184 FBXW7Q969H0 707 aa12.35□□□□□ -0.43
LINC00557-201ENST00000563184 AK7Q96M32 723 aa12.35□□□□□ -0.43
LINC00557-201ENST00000563184 ZNF454Q8N9F8 522 aa12.34□□□□□ -0.43
LINC00557-201ENST00000563184 PBX2P40425 430 aa12.32□□□□□ -0.44
LINC00557-201ENST00000563184 MAP2K5Q13163 448 aa12.32□□□□□ -0.44
LINC00557-201ENST00000563184 ZDHHC16Q969W1 377 aa12.32□□□□□ -0.44
LINC00557-201ENST00000563184 ADAM33Q9BZ11 813 aa12.31□□□□□ -0.44
LINC00557-201ENST00000563184 SPNS2Q8IVW8 549 aa12.3□□□□□ -0.44
LINC00557-201ENST00000563184 MINK1Q8N4C8 1332 aaPredicted RBP12.3□□□□□ -0.44
LINC00557-201ENST00000563184 TRIM66O15016 1216 aa12.28□□□□□ -0.44
LINC00557-201ENST00000563184 NEUROD2Q15784 382 aa12.28□□□□□ -0.44
LINC00557-201ENST00000563184 C6orf132Q5T0Z8 1188 aa12.28□□□□□ -0.44
LINC00557-201ENST00000563184 CCDC102AQ96A19 550 aa12.28□□□□□ -0.44
LINC00557-201ENST00000563184 IRF6O14896 467 aa12.27□□□□□ -0.45
LINC00557-201ENST00000563184 PPP4R3BQ5MIZ7 849 aa12.27□□□□□ -0.45
LINC00557-201ENST00000563184 PDE4DQ08499 809 aa12.22□□□□□ -0.45
LINC00557-201ENST00000563184 MMRN1Q13201 1228 aa12.22□□□□□ -0.45
LINC00557-201ENST00000563184 LSM11P83369 360 aaKnown RBP eCLIP12.21□□□□□ -0.45
LINC00557-201ENST00000563184 BCL2L12Q9HB09 334 aa12.21□□□□□ -0.45
LINC00557-201ENST00000563184 GPBP1L1Q9HC44 474 aaPredicted RBP12.21□□□□□ -0.45
LINC00557-201ENST00000563184 ARHGAP33O14559 1287 aa12.2□□□□□ -0.46
LINC00557-201ENST00000563184 POTEEQ6S8J3 1075 aa12.2□□□□□ -0.46
LINC00557-201ENST00000563184 COL9A1P20849 921 aa12.19□□□□□ -0.46
LINC00557-201ENST00000563184 CERKQ8TCT0 537 aa12.19□□□□□ -0.46
LINC00557-201ENST00000563184 AMHR2Q16671 573 aa12.18□□□□□ -0.46
LINC00557-201ENST00000563184 PADI6Q6TGC4 694 aa12.18□□□□□ -0.46
LINC00557-201ENST00000563184 TMEM132AQ24JP5 1023 aa12.17□□□□□ -0.46
LINC00557-201ENST00000563184 TTC13Q8NBP0 860 aa12.17□□□□□ -0.46
LINC00557-201ENST00000563184 KCNH8Q96L42 1107 aa12.17□□□□□ -0.46
LINC00557-201ENST00000563184 KDM4CQ9H3R0 1056 aa12.15□□□□□ -0.46
LINC00557-201ENST00000563184 RBM27Q9P2N5 1060 aaKnown RBP12.15□□□□□ -0.46
LINC00557-201ENST00000563184 PRSS12P56730 875 aa12.14□□□□□ -0.47
LINC00557-201ENST00000563184 FAM161AQ3B820 660 aa12.14□□□□□ -0.47
LINC00557-201ENST00000563184 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
LINC00557-201ENST00000563184 FAM198AQ9UFP1 575 aa12.14□□□□□ -0.47
LINC00557-201ENST00000563184 AXIN2Q9Y2T1 843 aa12.14□□□□□ -0.47
LINC00557-201ENST00000563184 CDCA7LQ96GN5 454 aa12.13□□□□□ -0.47
LINC00557-201ENST00000563184 PHOX2BQ99453 314 aa12.13□□□□□ -0.47
LINC00557-201ENST00000563184 PPP1R3GB7ZBB8 358 aa12.12□□□□□ -0.47
LINC00557-201ENST00000563184 TK2O00142 265 aa12.12□□□□□ -0.47
LINC00557-201ENST00000563184 PTPREP23469 700 aa12.12□□□□□ -0.47
LINC00557-201ENST00000563184 PARP9Q8IXQ6 854 aa12.12□□□□□ -0.47
LINC00557-201ENST00000563184 ADGRG1Q9Y653 693 aa12.12□□□□□ -0.47
LINC00557-201ENST00000563184 METTL3Q86U44 580 aaKnown RBP12.09□□□□□ -0.47
LINC00557-201ENST00000563184 REPIN1Q9BWE0 567 aaKnown RBP12.09□□□□□ -0.47
LINC00557-201ENST00000563184 ADGRD1Q6QNK2 874 aa12.08□□□□□ -0.48
LINC00557-201ENST00000563184 KCNK17Q96T54 332 aa12.08□□□□□ -0.48
LINC00557-201ENST00000563184 TSKSQ9UJT2 592 aa12.08□□□□□ -0.48
LINC00557-201ENST00000563184 MYT1LQ9UL68 1186 aa12.08□□□□□ -0.48
LINC00557-201ENST00000563184 PSEN2P49810 448 aa12.07□□□□□ -0.48
LINC00557-201ENST00000563184 PXYLP1Q8TE99 480 aa12.07□□□□□ -0.48
LINC00557-201ENST00000563184 TMUB1Q9BVT8 246 aa12.07□□□□□ -0.48
LINC00557-201ENST00000563184 C3orf80F5H4A9 247 aa12.06□□□□□ -0.48
LINC00557-201ENST00000563184 TTLL12Q14166 644 aaPredicted RBP12.06□□□□□ -0.48
LINC00557-201ENST00000563184 SLC4A5Q9BY07 1137 aa12.06□□□□□ -0.48
LINC00557-201ENST00000563184 OATP04181 439 aa12.05□□□□□ -0.48
LINC00557-201ENST00000563184 DMRTA1Q5VZB9 504 aa12.05□□□□□ -0.48
LINC00557-201ENST00000563184 NLRP7Q8WX94 980 aa12.05□□□□□ -0.48
LINC00557-201ENST00000563184 RNF166Q96A37 237 aaPredicted RBP12.05□□□□□ -0.48
LINC00557-201ENST00000563184 TRIM6-TRIM34B2RNG4 842 aa12.04□□□□□ -0.48
LINC00557-201ENST00000563184 PROX2Q3B8N5 592 aa12.04□□□□□ -0.48
LINC00557-201ENST00000563184 MDM2Q00987 491 aaPredicted RBP12.03□□□□□ -0.48
LINC00557-201ENST00000563184 GIGYF2Q6Y7W6 1299 aaKnown RBP12.03□□□□□ -0.48
LINC00557-201ENST00000563184 FAM117AQ9C073 453 aa12.03□□□□□ -0.48
LINC00557-201ENST00000563184 IL27Q8NEV9 243 aa12.02□□□□□ -0.49
LINC00557-201ENST00000563184 ZBED2Q9BTP6 218 aa12.02□□□□□ -0.49
LINC00557-201ENST00000563184 HRO43593 1189 aa12.01□□□□□ -0.49
LINC00557-201ENST00000563184 EYA1Q99502 592 aa12.01□□□□□ -0.49
LINC00557-201ENST00000563184 MS4A1P11836 297 aa12□□□□□ -0.49
LINC00557-201ENST00000563184 CLCN1P35523 988 aa12□□□□□ -0.49
LINC00557-201ENST00000563184 GPCPD1Q9NPB8 672 aa12□□□□□ -0.49
LINC00557-201ENST00000563184 PLEKHG3A1L390 1219 aa11.99□□□□□ -0.49
LINC00557-201ENST00000563184 RBM46Q8TBY0 533 aaKnown RBP11.99□□□□□ -0.49
LINC00557-201ENST00000563184 VPS9D1Q9Y2B5 631 aa11.99□□□□□ -0.49
LINC00557-201ENST00000563184 ONECUT3O60422 494 aaPredicted RBP11.98□□□□□ -0.49
LINC00557-201ENST00000563184 NUDT18Q6ZVK8 323 aa11.98□□□□□ -0.49
LINC00557-201ENST00000563184 TATDN2Q93075 761 aa11.97□□□□□ -0.49
LINC00557-201ENST00000563184 NBPF26B4DH59 902 aa11.96□□□□□ -0.49
LINC00557-201ENST00000563184 PACS2Q86VP3 889 aa11.96□□□□□ -0.49
LINC00557-201ENST00000563184 PNMA3Q9UL41 463 aa11.96□□□□□ -0.49
LINC00557-201ENST00000563184 RCCD1A6NED2 376 aa11.95□□□□□ -0.5
LINC00557-201ENST00000563184 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.94□□□□□ -0.5
LINC00557-201ENST00000563184 SMAPO00193 183 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms