RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	CLTC	Q00610	1675 aa	Known RBP	13.75	□□□□□ -0.21
CKLF-208	ENST00000563092	PLEKHH2	Q8IVE3	1493 aa		13.74	□□□□□ -0.21
CKLF-208	ENST00000563092	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.74	□□□□□ -0.21
CKLF-208	ENST00000563092	UBAP1L	F5GYI3	381 aa		13.74	□□□□□ -0.21
CKLF-208	ENST00000563092	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CKLF-208	ENST00000563092	EHMT2	Q96KQ7	1210 aa		13.73	□□□□□ -0.21
CKLF-208	ENST00000563092	A2ML1	A8K2U0	1454 aa		13.71	□□□□□ -0.21
CKLF-208	ENST00000563092	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.7	□□□□□ -0.22
CKLF-208	ENST00000563092	DNMT1	P26358	1616 aa	Known RBP	13.7	□□□□□ -0.22
CKLF-208	ENST00000563092	MBD5	Q9P267	1494 aa		13.69	□□□□□ -0.22
CKLF-208	ENST00000563092	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.69	□□□□□ -0.22
CKLF-208	ENST00000563092	NEURL4	Q96JN8	1562 aa		13.69	□□□□□ -0.22
CKLF-208	ENST00000563092	ADGB	Q8N7X0	1667 aa		13.69	□□□□□ -0.22
CKLF-208	ENST00000563092	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.68	□□□□□ -0.22
CKLF-208	ENST00000563092	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.68	□□□□□ -0.22
CKLF-208	ENST00000563092	CPS1	P31327	1500 aa		13.68	□□□□□ -0.22
CKLF-208	ENST00000563092	CAPN15	O75808	1086 aa		13.67	□□□□□ -0.22
CKLF-208	ENST00000563092	GGT6	Q6P531	493 aa		13.67	□□□□□ -0.22
CKLF-208	ENST00000563092	MED1	Q15648	1581 aa	Predicted RBP	13.66	□□□□□ -0.22
CKLF-208	ENST00000563092	FAM135A	Q9P2D6	1515 aa		13.66	□□□□□ -0.22
CKLF-208	ENST00000563092	ALK	Q9UM73	1620 aa		13.65	□□□□□ -0.22
CKLF-208	ENST00000563092	HSPA1L	P34931	641 aa		13.65	□□□□□ -0.22
CKLF-208	ENST00000563092	DHX29	Q7Z478	1369 aa	Known RBP	13.65	□□□□□ -0.22
CKLF-208	ENST00000563092	CCNB3	Q8WWL7	1395 aa		13.65	□□□□□ -0.22
CKLF-208	ENST00000563092	SHANK2	Q9UPX8	1470 aa		13.65	□□□□□ -0.22
CKLF-208	ENST00000563092	PZP	P20742	1482 aa		13.64	□□□□□ -0.23
CKLF-208	ENST00000563092	DSG3	P32926	999 aa		13.64	□□□□□ -0.23
CKLF-208	ENST00000563092	TIAM1	Q13009	1591 aa		13.63	□□□□□ -0.23
CKLF-208	ENST00000563092	VWDE	Q8N2E2	1590 aa		13.63	□□□□□ -0.23
CKLF-208	ENST00000563092	MED14	O60244	1454 aa		13.63	□□□□□ -0.23
CKLF-208	ENST00000563092	POLR1A	O95602	1720 aa	Predicted RBP	13.63	□□□□□ -0.23
CKLF-208	ENST00000563092	ZNF644	Q9H582	1327 aa	Predicted RBP	13.63	□□□□□ -0.23
CKLF-208	ENST00000563092	TNR	Q92752	1358 aa		13.62	□□□□□ -0.23
CKLF-208	ENST00000563092	TOM1	O60784	492 aa		13.61	□□□□□ -0.23
CKLF-208	ENST00000563092	DEPDC5	O75140	1603 aa		13.61	□□□□□ -0.23
CKLF-208	ENST00000563092	KDM5D	Q9BY66	1539 aa		13.6	□□□□□ -0.23
CKLF-208	ENST00000563092	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.6	□□□□□ -0.23
CKLF-208	ENST00000563092	MTUS2	Q5JR59	1369 aa		13.59	□□□□□ -0.23
CKLF-208	ENST00000563092	CEP162	Q5TB80	1403 aa		13.59	□□□□□ -0.23
CKLF-208	ENST00000563092	SLC4A2	P04920	1241 aa		13.59	□□□□□ -0.23
CKLF-208	ENST00000563092	NLRP1	Q9C000	1473 aa		13.59	□□□□□ -0.23
CKLF-208	ENST00000563092	MIA2	Q96PC5	1412 aa		13.58	□□□□□ -0.24
CKLF-208	ENST00000563092	ANKLE2	Q86XL3	938 aa		13.57	□□□□□ -0.24
CKLF-208	ENST00000563092	EHBP1L1	Q8N3D4	1523 aa		13.57	□□□□□ -0.24
CKLF-208	ENST00000563092	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CKLF-208	ENST00000563092	PIP4K2B	P78356	416 aa		13.56	□□□□□ -0.24
CKLF-208	ENST00000563092	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.56	□□□□□ -0.24
CKLF-208	ENST00000563092	NPHP4	O75161	1426 aa	Predicted RBP	13.56	□□□□□ -0.24
CKLF-208	ENST00000563092	CCDC141	Q6ZP82	1450 aa		13.55	□□□□□ -0.24
CKLF-208	ENST00000563092	UGGT1	Q9NYU2	1555 aa		13.55	□□□□□ -0.24
CKLF-208	ENST00000563092	KIF3B	O15066	747 aa		13.55	□□□□□ -0.24
CKLF-208	ENST00000563092	RSPH4A	Q5TD94	716 aa		13.54	□□□□□ -0.24
CKLF-208	ENST00000563092	WASHC2C	Q9Y4E1	1318 aa		13.53	□□□□□ -0.24
CKLF-208	ENST00000563092	LRRC7	Q96NW7	1537 aa		13.53	□□□□□ -0.24
CKLF-208	ENST00000563092	STRCP1	A6NGW2	1772 aa		13.52	□□□□□ -0.25
CKLF-208	ENST00000563092	IQGAP1	P46940	1657 aa		13.51	□□□□□ -0.25
CKLF-208	ENST00000563092	RNF17	Q9BXT8	1623 aa	Known RBP	13.51	□□□□□ -0.25
CKLF-208	ENST00000563092	ARHGEF5	Q12774	1597 aa		13.51	□□□□□ -0.25
CKLF-208	ENST00000563092	CAMSAP2	Q08AD1	1489 aa		13.51	□□□□□ -0.25
CKLF-208	ENST00000563092	SYNM	O15061	1565 aa		13.5	□□□□□ -0.25
CKLF-208	ENST00000563092	ABCC3	O15438	1527 aa		13.49	□□□□□ -0.25
CKLF-208	ENST00000563092	NCOA2	Q15596	1464 aa		13.49	□□□□□ -0.25
CKLF-208	ENST00000563092	ZC3H13	Q5T200	1668 aa	Known RBP	13.48	□□□□□ -0.25
CKLF-208	ENST00000563092	ERVK-7	P63135	1459 aa		13.47	□□□□□ -0.25
CKLF-208	ENST00000563092	MROH1	Q8NDA8	1641 aa		13.46	□□□□□ -0.25
CKLF-208	ENST00000563092	MAST1	Q9Y2H9	1570 aa		13.46	□□□□□ -0.25
CKLF-208	ENST00000563092	RGS17	Q9UGC6	210 aa	Predicted RBP	13.46	□□□□□ -0.25
CKLF-208	ENST00000563092	ARHGAP23	Q9P227	1491 aa		13.46	□□□□□ -0.25
CKLF-208	ENST00000563092	APLP2	Q06481	763 aa		13.45	□□□□□ -0.26
CKLF-208	ENST00000563092	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.45	□□□□□ -0.26
CKLF-208	ENST00000563092	SLIT1	O75093	1534 aa		13.44	□□□□□ -0.26
CKLF-208	ENST00000563092	UBR1	Q8IWV7	1749 aa		13.44	□□□□□ -0.26
CKLF-208	ENST00000563092	SCAF11	Q99590	1463 aa	Known RBP	13.43	□□□□□ -0.26
CKLF-208	ENST00000563092	TSPY4	P0CV99	314 aa		13.42	□□□□□ -0.26
CKLF-208	ENST00000563092	TSPY10	P0CW01	314 aa		13.42	□□□□□ -0.26
CKLF-208	ENST00000563092	ARHGAP31	Q2M1Z3	1444 aa		13.41	□□□□□ -0.26
CKLF-208	ENST00000563092	LTK	P29376	864 aa		13.41	□□□□□ -0.26
CKLF-208	ENST00000563092	FAM135B	Q49AJ0	1406 aa		13.4	□□□□□ -0.26
CKLF-208	ENST00000563092	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.4	□□□□□ -0.26
CKLF-208	ENST00000563092	XIRP1	Q702N8	1843 aa	Known RBP	13.4	□□□□□ -0.26
CKLF-208	ENST00000563092	PRDM15	P57071	1507 aa	Predicted RBP	13.38	□□□□□ -0.27
CKLF-208	ENST00000563092	LRRC9	Q6ZRR7	1453 aa		13.36	□□□□□ -0.27
CKLF-208	ENST00000563092	DUOX2	Q9NRD8	1548 aa		13.36	□□□□□ -0.27
CKLF-208	ENST00000563092	TXNDC2	Q86VQ3	553 aa		13.36	□□□□□ -0.27
CKLF-208	ENST00000563092	CEP152	O94986	1710 aa		13.36	□□□□□ -0.27
CKLF-208	ENST00000563092	ABCB7	O75027	752 aa		13.35	□□□□□ -0.27
CKLF-208	ENST00000563092	KDM5A	P29375	1690 aa	Known RBP	13.34	□□□□□ -0.27
CKLF-208	ENST00000563092	TMEM2	Q9UHN6	1383 aa		13.34	□□□□□ -0.27
CKLF-208	ENST00000563092	TET3	O43151	1660 aa		13.34	□□□□□ -0.27
CKLF-208	ENST00000563092	MAP3K1	Q13233	1512 aa		13.34	□□□□□ -0.27
CKLF-208	ENST00000563092	POTEH	Q6S545	545 aa		13.33	□□□□□ -0.28
CKLF-208	ENST00000563092	POTEA	Q6S8J7	498 aa		13.33	□□□□□ -0.28
CKLF-208	ENST00000563092	MYOM3	Q5VTT5	1437 aa		13.32	□□□□□ -0.28
CKLF-208	ENST00000563092	ERBIN	Q96RT1	1412 aa		13.32	□□□□□ -0.28
CKLF-208	ENST00000563092	TMEM94	Q12767	1356 aa		13.32	□□□□□ -0.28
CKLF-208	ENST00000563092	PIK3C2B	O00750	1634 aa		13.31	□□□□□ -0.28
CKLF-208	ENST00000563092	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.31	□□□□□ -0.28
CKLF-208	ENST00000563092	EID1	Q9Y6B2	187 aa		13.31	□□□□□ -0.28
CKLF-208	ENST00000563092	LMTK2	Q8IWU2	1503 aa		13.3	□□□□□ -0.28
CKLF-208	ENST00000563092	KCNA6	P17658	529 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms