RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PSEN2P49810 448 aa8.13□□□□□ -1.11
VPS35-203ENST00000562420 ZNF454Q8N9F8 522 aa8.13□□□□□ -1.11
VPS35-203ENST00000562420 ZDHHC16Q969W1 377 aa8.13□□□□□ -1.11
VPS35-203ENST00000562420 BCL2L12Q9HB09 334 aa8.13□□□□□ -1.11
VPS35-203ENST00000562420 OSBPP22059 807 aa8.12□□□□□ -1.11
VPS35-203ENST00000562420 MLLT3P42568 568 aaPredicted RBP8.12□□□□□ -1.11
VPS35-203ENST00000562420 EN1Q05925 392 aaPredicted RBP8.12□□□□□ -1.11
VPS35-203ENST00000562420 DMRTA1Q5VZB9 504 aa8.12□□□□□ -1.11
VPS35-203ENST00000562420 DDX12PQ92771 950 aa8.12□□□□□ -1.11
VPS35-203ENST00000562420 PLA2G2EQ9NZK7 142 aa8.12□□□□□ -1.11
VPS35-203ENST00000562420 HCSTQ9UBK5 93 aa8.11□□□□□ -1.11
VPS35-203ENST00000562420 GRXCR2A6NFK2 248 aa8.1□□□□□ -1.11
VPS35-203ENST00000562420 ADAM33Q9BZ11 813 aa8.08□□□□□ -1.12
VPS35-203ENST00000562420 HRO43593 1189 aa8.06□□□□□ -1.12
VPS35-203ENST00000562420 PTPREP23469 700 aa8.06□□□□□ -1.12
VPS35-203ENST00000562420 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS35-203ENST00000562420 CERKQ8TCT0 537 aa8.06□□□□□ -1.12
VPS35-203ENST00000562420 KCNH8Q96L42 1107 aa8.06□□□□□ -1.12
VPS35-203ENST00000562420 PPP1R3GB7ZBB8 358 aa8.05□□□□□ -1.12
VPS35-203ENST00000562420 MAP3K7O43318 606 aa8.05□□□□□ -1.12
VPS35-203ENST00000562420 C6orf132Q5T0Z8 1188 aa8.05□□□□□ -1.12
VPS35-203ENST00000562420 KCTD12Q96CX2 325 aaKnown RBP8.05□□□□□ -1.12
VPS35-203ENST00000562420 TK2O00142 265 aa8.04□□□□□ -1.12
VPS35-203ENST00000562420 PRIM1P49642 420 aaKnown RBP8.04□□□□□ -1.12
VPS35-203ENST00000562420 RBM27Q9P2N5 1060 aaKnown RBP8.04□□□□□ -1.12
VPS35-203ENST00000562420 LMOD2Q6P5Q4 547 aa8.03□□□□□ -1.12
VPS35-203ENST00000562420 STAC3Q96MF2 364 aa8.03□□□□□ -1.12
VPS35-203ENST00000562420 KCNK17Q96T54 332 aa8.03□□□□□ -1.12
VPS35-203ENST00000562420 SLC4A5Q9BY07 1137 aa8.03□□□□□ -1.12
VPS35-203ENST00000562420 RBM26Q5T8P6 1007 aaKnown RBP8.01□□□□□ -1.13
VPS35-203ENST00000562420 ONECUT3O60422 494 aaPredicted RBP8□□□□□ -1.13
VPS35-203ENST00000562420 FCHSD2O94868 740 aa8□□□□□ -1.13
VPS35-203ENST00000562420 PTGDRQ13258 359 aa8□□□□□ -1.13
VPS35-203ENST00000562420 TSR1Q2NL82 804 aaKnown RBP8□□□□□ -1.13
VPS35-203ENST00000562420 GPIHBP1Q8IV16 184 aa8□□□□□ -1.13
VPS35-203ENST00000562420 RBM33Q96EV2 1170 aaKnown RBP8□□□□□ -1.13
VPS35-203ENST00000562420 GPR37O15354 613 aa7.99□□□□□ -1.13
VPS35-203ENST00000562420 PTPN5P54829 565 aa7.99□□□□□ -1.13
VPS35-203ENST00000562420 NPDC1Q9NQX5 325 aaPredicted RBP7.99□□□□□ -1.13
VPS35-203ENST00000562420 HIC1Q14526 733 aa7.98□□□□□ -1.13
VPS35-203ENST00000562420 ZBED2Q9BTP6 218 aa7.98□□□□□ -1.13
VPS35-203ENST00000562420 CDHR5Q9HBB8 845 aa7.98□□□□□ -1.13
VPS35-203ENST00000562420 NUTM2FA1L443 756 aa7.97□□□□□ -1.13
VPS35-203ENST00000562420 COL9A1P20849 921 aa7.97□□□□□ -1.13
VPS35-203ENST00000562420 TTC13Q8NBP0 860 aa7.96□□□□□ -1.14
VPS35-203ENST00000562420 VPS9D1Q9Y2B5 631 aa7.96□□□□□ -1.14
VPS35-203ENST00000562420 PRSS12P56730 875 aa7.95□□□□□ -1.14
VPS35-203ENST00000562420 TRIM6-TRIM34B2RNG4 842 aa7.94□□□□□ -1.14
VPS35-203ENST00000562420 GNPATO15228 680 aa7.94□□□□□ -1.14
VPS35-203ENST00000562420 CDCA7LQ96GN5 454 aa7.93□□□□□ -1.14
VPS35-203ENST00000562420 RABGEF1Q9UJ41 708 aa7.93□□□□□ -1.14
VPS35-203ENST00000562420 ZC3H15Q8WU90 426 aaKnown RBP7.92□□□□□ -1.14
VPS35-203ENST00000562420 ZMYND10O75800 440 aa7.91□□□□□ -1.14
VPS35-203ENST00000562420 PADI6Q6TGC4 694 aa7.9□□□□□ -1.14
VPS35-203ENST00000562420 TSKSQ9UJT2 592 aa7.9□□□□□ -1.14
VPS35-203ENST00000562420 NBPF26B4DH59 902 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 BHMG1C9JSJ3 638 aaPredicted RBP7.89□□□□□ -1.15
VPS35-203ENST00000562420 MAP2K5Q13163 448 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 PROX2Q3B8N5 592 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 BARGINQ6ZT62 677 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 PACS2Q86VP3 889 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 NBPF3Q9H094 633 aa7.89□□□□□ -1.15
VPS35-203ENST00000562420 MINK1Q8N4C8 1332 aaPredicted RBP7.88□□□□□ -1.15
VPS35-203ENST00000562420 GOLGA8CPA6NN73 597 aa7.88□□□□□ -1.15
VPS35-203ENST00000562420 THSD4Q6ZMP0 1018 aa7.88□□□□□ -1.15
VPS35-203ENST00000562420 LAPTM4BQ86VI4 370 aa7.88□□□□□ -1.15
VPS35-203ENST00000562420 WNT2BQ93097 391 aa7.87□□□□□ -1.15
VPS35-203ENST00000562420 FAM198AQ9UFP1 575 aa7.87□□□□□ -1.15
VPS35-203ENST00000562420 MRPL50Q8N5N7 158 aaKnown RBP7.86□□□□□ -1.15
VPS35-203ENST00000562420 ADGRG1Q9Y653 693 aa7.86□□□□□ -1.15
VPS35-203ENST00000562420 OATP04181 439 aa7.85□□□□□ -1.15
VPS35-203ENST00000562420 KIAA1468Q9P260 1216 aa7.85□□□□□ -1.15
VPS35-203ENST00000562420 FAM98CQ17RN3 349 aaKnown RBP7.84□□□□□ -1.15
VPS35-203ENST00000562420 TATDN2Q93075 761 aa7.84□□□□□ -1.15
VPS35-203ENST00000562420 IRF6O14896 467 aa7.83□□□□□ -1.16
VPS35-203ENST00000562420 FECHP22830 423 aa7.83□□□□□ -1.16
VPS35-203ENST00000562420 RBM46Q8TBY0 533 aaKnown RBP7.83□□□□□ -1.16
VPS35-203ENST00000562420 EYA1Q99502 592 aa7.83□□□□□ -1.16
VPS35-203ENST00000562420 METTL3Q86U44 580 aaKnown RBP7.82□□□□□ -1.16
VPS35-203ENST00000562420 PXYLP1Q8TE99 480 aa7.82□□□□□ -1.16
VPS35-203ENST00000562420 PNMA3Q9UL41 463 aa7.82□□□□□ -1.16
VPS35-203ENST00000562420 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.81□□□□□ -1.16
VPS35-203ENST00000562420 NUDT18Q6ZVK8 323 aa7.81□□□□□ -1.16
VPS35-203ENST00000562420 CCDC102AQ96A19 550 aa7.8□□□□□ -1.16
VPS35-203ENST00000562420 A0A0G2JS52 829 aa7.79□□□□□ -1.16
VPS35-203ENST00000562420 DNAJB2P25686 324 aa7.79□□□□□ -1.16
VPS35-203ENST00000562420 IFFO2Q5TF58 517 aa7.79□□□□□ -1.16
VPS35-203ENST00000562420 AK7Q96M32 723 aa7.79□□□□□ -1.16
VPS35-203ENST00000562420 C3orf80F5H4A9 247 aa7.78□□□□□ -1.16
VPS35-203ENST00000562420 TPRNQ4KMQ1 711 aa7.78□□□□□ -1.16
VPS35-203ENST00000562420 KRI1Q8N9T8 703 aaKnown RBP7.78□□□□□ -1.16
VPS35-203ENST00000562420 IRX2Q9BZI1 471 aaPredicted RBP7.78□□□□□ -1.16
VPS35-203ENST00000562420 AMHR2Q16671 573 aa7.77□□□□□ -1.17
VPS35-203ENST00000562420 ZFRQ96KR1 1074 aaKnown RBP7.77□□□□□ -1.17
VPS35-203ENST00000562420 TMEM134Q9H6X4 195 aa7.77□□□□□ -1.17
VPS35-203ENST00000562420 SEPT9Q9UHD8 586 aaPredicted RBP7.77□□□□□ -1.17
VPS35-203ENST00000562420 RCCD1A6NED2 376 aa7.76□□□□□ -1.17
VPS35-203ENST00000562420 RGS20O76081 388 aa7.76□□□□□ -1.17
VPS35-203ENST00000562420 SMAPO00193 183 aa7.75□□□□□ -1.17
VPS35-203ENST00000562420 BCAMP50895 628 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms