RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 ADAMTS12P58397 1594 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 NUP160Q12769 1436 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 IRX6P78412 446 aaPredicted RBP12.25□□□□□ -0.45
VPS39-205ENST00000562258 PSME1Q06323 249 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 NBPF1Q3BBV0 1214 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 DENND4BO75064 1496 aaPredicted RBP12.24□□□□□ -0.45
VPS39-205ENST00000562258 HSPA2P54652 639 aa12.24□□□□□ -0.45
VPS39-205ENST00000562258 PIP4K2BP78356 416 aa12.24□□□□□ -0.45
VPS39-205ENST00000562258 PLEKHH2Q8IVE3 1493 aa12.24□□□□□ -0.45
VPS39-205ENST00000562258 SLC52A1Q9NWF4 448 aa12.24□□□□□ -0.45
VPS39-205ENST00000562258 AKNAQ7Z591 1439 aa12.24□□□□□ -0.45
VPS39-205ENST00000562258 IDI1Q13907 227 aa12.23□□□□□ -0.45
VPS39-205ENST00000562258 GTF3C3Q9Y5Q9 886 aa12.23□□□□□ -0.45
VPS39-205ENST00000562258 U2AF1L5P0DN76 240 aaPredicted RBP12.23□□□□□ -0.45
VPS39-205ENST00000562258 U2AF1Q01081 240 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS39-205ENST00000562258 NUP153P49790 1475 aaKnown RBP12.22□□□□□ -0.45
VPS39-205ENST00000562258 DAPK1P53355 1430 aa12.22□□□□□ -0.45
VPS39-205ENST00000562258 AMPHP49418 695 aa12.22□□□□□ -0.45
VPS39-205ENST00000562258 PMFBP1Q8TBY8 1022 aa12.22□□□□□ -0.45
VPS39-205ENST00000562258 DAXXQ9UER7 740 aaPredicted RBP12.22□□□□□ -0.45
VPS39-205ENST00000562258 THOC2Q8NI27 1593 aaKnown RBP12.22□□□□□ -0.45
VPS39-205ENST00000562258 CABP2Q9NPB3 220 aa12.22□□□□□ -0.45
VPS39-205ENST00000562258 PANK3Q9H999 370 aa12.21□□□□□ -0.46
VPS39-205ENST00000562258 EIF3AQ14152 1382 aaKnown RBP12.2□□□□□ -0.46
VPS39-205ENST00000562258 ESCO1Q5FWF5 840 aa12.2□□□□□ -0.46
VPS39-205ENST00000562258 PRAM1Q96QH2 718 aa12.2□□□□□ -0.46
VPS39-205ENST00000562258 ZNF330Q9Y3S2 320 aaPredicted RBP12.19□□□□□ -0.46
VPS39-205ENST00000562258 EVC2Q86UK5 1308 aa12.19□□□□□ -0.46
VPS39-205ENST00000562258 CCDC141Q6ZP82 1450 aa12.19□□□□□ -0.46
VPS39-205ENST00000562258 XPCQ01831 940 aaPredicted RBP12.18□□□□□ -0.46
VPS39-205ENST00000562258 CENPJQ9HC77 1338 aaPredicted RBP12.18□□□□□ -0.46
VPS39-205ENST00000562258 ABCC5O15440 1437 aa12.18□□□□□ -0.46
VPS39-205ENST00000562258 FKBP8Q14318 412 aa12.18□□□□□ -0.46
VPS39-205ENST00000562258 USP35Q9P2H5 1018 aa12.18□□□□□ -0.46
VPS39-205ENST00000562258 RRBP1Q9P2E9 1410 aaKnown RBP12.17□□□□□ -0.46
VPS39-205ENST00000562258 CAMSAP2Q08AD1 1489 aa12.17□□□□□ -0.46
VPS39-205ENST00000562258 WDR7Q9Y4E6 1490 aa12.17□□□□□ -0.46
VPS39-205ENST00000562258 NPHP1O15259 732 aa12.17□□□□□ -0.46
VPS39-205ENST00000562258 EVA1CP58658 441 aa12.17□□□□□ -0.46
VPS39-205ENST00000562258 GPATCH8Q9UKJ3 1502 aaKnown RBP12.17□□□□□ -0.46
VPS39-205ENST00000562258 DISP1Q96F81 1524 aa12.16□□□□□ -0.46
VPS39-205ENST00000562258 CEP170Q5SW79 1584 aa12.16□□□□□ -0.46
VPS39-205ENST00000562258 USP47Q96K76 1375 aa12.16□□□□□ -0.46
VPS39-205ENST00000562258 TARBP1Q13395 1621 aaKnown RBP12.16□□□□□ -0.46
VPS39-205ENST00000562258 PLCH2O75038 1416 aa12.15□□□□□ -0.46
VPS39-205ENST00000562258 KIF14Q15058 1648 aa12.15□□□□□ -0.46
VPS39-205ENST00000562258 SUPT6HQ7KZ85 1726 aaKnown RBP12.15□□□□□ -0.46
VPS39-205ENST00000562258 NUTM2BA6NNL0 878 aaPredicted RBP12.15□□□□□ -0.47
VPS39-205ENST00000562258 NUTM2EB1AL46 878 aaPredicted RBP12.15□□□□□ -0.47
VPS39-205ENST00000562258 NUTM2AQ8IVF1 878 aaPredicted RBP12.15□□□□□ -0.47
VPS39-205ENST00000562258 TRAPPC8Q9Y2L5 1435 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 WAPLQ7Z5K2 1190 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 ABCC2Q92887 1545 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 MEX3CQ5U5Q3 659 aaKnown RBP12.14□□□□□ -0.47
VPS39-205ENST00000562258 COG3Q96JB2 828 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 GGNBP2Q9H3C7 697 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 UGGT2Q9NYU1 1516 aa12.14□□□□□ -0.47
VPS39-205ENST00000562258 NLRP6P59044 892 aa12.13□□□□□ -0.47
VPS39-205ENST00000562258 NBPF8Q3BBV2 869 aa12.13□□□□□ -0.47
VPS39-205ENST00000562258 RTF1Q92541 710 aaKnown RBP12.13□□□□□ -0.47
VPS39-205ENST00000562258 NAIPQ13075 1403 aa12.13□□□□□ -0.47
VPS39-205ENST00000562258 NCOA1Q15788 1441 aa12.13□□□□□ -0.47
VPS39-205ENST00000562258 FRAT1Q92837 279 aaPredicted RBP12.13□□□□□ -0.47
VPS39-205ENST00000562258 KIAA0556O60303 1618 aa12.12□□□□□ -0.47
VPS39-205ENST00000562258 RAPGEF6Q8TEU7 1601 aa12.12□□□□□ -0.47
VPS39-205ENST00000562258 CCDC146Q8IYE0 955 aa12.12□□□□□ -0.47
VPS39-205ENST00000562258 KTN1Q86UP2 1357 aaKnown RBP12.12□□□□□ -0.47
VPS39-205ENST00000562258 HFM1A2PYH4 1435 aa12.11□□□□□ -0.47
VPS39-205ENST00000562258 ABCA5Q8WWZ7 1642 aa12.11□□□□□ -0.47
VPS39-205ENST00000562258 SLC12A5Q9H2X9 1139 aa12.11□□□□□ -0.47
VPS39-205ENST00000562258 DHX29Q7Z478 1369 aaKnown RBP12.11□□□□□ -0.47
VPS39-205ENST00000562258 ABTB2Q8N961 1025 aa12.1□□□□□ -0.47
VPS39-205ENST00000562258 ERBINQ96RT1 1412 aa12.09□□□□□ -0.47
VPS39-205ENST00000562258 KIAA1107Q9UPP5 1409 aa12.09□□□□□ -0.47
VPS39-205ENST00000562258 PBRM1Q86U86 1689 aa12.09□□□□□ -0.47
VPS39-205ENST00000562258 TEX14Q8IWB6 1497 aa12.09□□□□□ -0.47
VPS39-205ENST00000562258 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.09□□□□□ -0.47
VPS39-205ENST00000562258 RRP7AQ9Y3A4 280 aaKnown RBP12.09□□□□□ -0.47
VPS39-205ENST00000562258 CABP1Q9NZU7 370 aa12.08□□□□□ -0.48
VPS39-205ENST00000562258 SYTL4Q96C24 671 aaPredicted RBP12.08□□□□□ -0.48
VPS39-205ENST00000562258 AMOTL2Q9Y2J4 779 aa12.08□□□□□ -0.48
VPS39-205ENST00000562258 PHF23Q9BUL5 403 aaPredicted RBP12.07□□□□□ -0.48
VPS39-205ENST00000562258 ADGRF5Q8IZF2 1346 aa12.07□□□□□ -0.48
VPS39-205ENST00000562258 FOXO3O43524 673 aa12.07□□□□□ -0.48
VPS39-205ENST00000562258 CDK19Q9BWU1 502 aa12.06□□□□□ -0.48
VPS39-205ENST00000562258 CGNL1Q0VF96 1302 aa12.06□□□□□ -0.48
VPS39-205ENST00000562258 PPP6R1Q9UPN7 881 aa12.06□□□□□ -0.48
VPS39-205ENST00000562258 STRN4Q9NRL3 753 aa12.06□□□□□ -0.48
VPS39-205ENST00000562258 NLRP2Q9NX02 1062 aa12.06□□□□□ -0.48
VPS39-205ENST00000562258 CCDC136Q96JN2 1154 aa12.05□□□□□ -0.48
VPS39-205ENST00000562258 STAC3Q96MF2 364 aa12.05□□□□□ -0.48
VPS39-205ENST00000562258 PNNQ9H307 717 aaKnown RBP12.05□□□□□ -0.48
VPS39-205ENST00000562258 SYCP2Q9BX26 1530 aa12.04□□□□□ -0.48
VPS39-205ENST00000562258 PTPN23Q9H3S7 1636 aa12.04□□□□□ -0.48
VPS39-205ENST00000562258 ELL2O00472 640 aaPredicted RBP12.04□□□□□ -0.48
VPS39-205ENST00000562258 ERCC6L2Q5T890 1561 aa12.04□□□□□ -0.48
VPS39-205ENST00000562258 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
VPS39-205ENST00000562258 ROCK1Q13464 1354 aa12.03□□□□□ -0.48
VPS39-205ENST00000562258 FTSJ3Q8IY81 847 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms