RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PZPP20742 1482 aa18.14■□□□□ 0.49
CLK3-206ENST00000562078 RSPH4AQ5TD94 716 aa18.13■□□□□ 0.49
CLK3-206ENST00000562078 HNRNPUQ00839 825 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLK3-206ENST00000562078 ARHGEF12Q9NZN5 1544 aa18.12■□□□□ 0.49
CLK3-206ENST00000562078 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
CLK3-206ENST00000562078 ANKRD30BQ9BXX2 1392 aa18.11■□□□□ 0.49
CLK3-206ENST00000562078 CD109Q6YHK3 1445 aa18.11■□□□□ 0.49
CLK3-206ENST00000562078 RPRD2Q5VT52 1461 aaKnown RBP18.1■□□□□ 0.49
CLK3-206ENST00000562078 PKNOX2Q96KN3 472 aa18.09■□□□□ 0.49
CLK3-206ENST00000562078 ANKRD50Q9ULJ7 1429 aa18.09■□□□□ 0.49
CLK3-206ENST00000562078 MAST1Q9Y2H9 1570 aa18.09■□□□□ 0.49
CLK3-206ENST00000562078 IPO9Q96P70 1041 aaKnown RBP18.09■□□□□ 0.49
CLK3-206ENST00000562078 CFAP74Q9C0B2 1584 aa18.09■□□□□ 0.49
CLK3-206ENST00000562078 ADGRL1O94910 1474 aa18.07■□□□□ 0.48
CLK3-206ENST00000562078 TEX14Q8IWB6 1497 aa18.06■□□□□ 0.48
CLK3-206ENST00000562078 KIF15Q9NS87 1388 aa18.06■□□□□ 0.48
CLK3-206ENST00000562078 TRAPPC8Q9Y2L5 1435 aa18.06■□□□□ 0.48
CLK3-206ENST00000562078 ZBTB47Q9UFB7 747 aaPredicted RBP18.06■□□□□ 0.48
CLK3-206ENST00000562078 WASHC2AQ641Q2 1341 aa18.05■□□□□ 0.48
CLK3-206ENST00000562078 L3MBTL2Q969R5 705 aa18.05■□□□□ 0.48
CLK3-206ENST00000562078 MAP3K4Q9Y6R4 1608 aa18.04■□□□□ 0.48
CLK3-206ENST00000562078 ANP32AP39687 249 aaKnown RBP18.04■□□□□ 0.48
CLK3-206ENST00000562078 PLXNC1O60486 1568 aa18.04■□□□□ 0.48
CLK3-206ENST00000562078 DIP2BQ9P265 1576 aa18.03■□□□□ 0.48
CLK3-206ENST00000562078 SCAPERQ9BY12 1400 aa18.03■□□□□ 0.48
CLK3-206ENST00000562078 GLI2P10070 1586 aa18.03■□□□□ 0.48
CLK3-206ENST00000562078 AFAP1Q8N556 730 aa18.01■□□□□ 0.47
CLK3-206ENST00000562078 FAM69CQ0P6D2 419 aa18■□□□□ 0.47
CLK3-206ENST00000562078 BRPF3Q9ULD4 1205 aa18■□□□□ 0.47
CLK3-206ENST00000562078 SPAG9O60271 1321 aaKnown RBP18■□□□□ 0.47
CLK3-206ENST00000562078 KDM5DQ9BY66 1539 aa18■□□□□ 0.47
CLK3-206ENST00000562078 TSPOAP1O95153 1857 aa17.99■□□□□ 0.47
CLK3-206ENST00000562078 C11orf95C9JLR9 678 aaPredicted RBP17.99■□□□□ 0.47
CLK3-206ENST00000562078 ZFYVE16Q7Z3T8 1539 aa17.99■□□□□ 0.47
CLK3-206ENST00000562078 PKD2Q13563 968 aa17.98■□□□□ 0.47
CLK3-206ENST00000562078 NUP155O75694 1391 aa17.98■□□□□ 0.47
CLK3-206ENST00000562078 INO80Q9ULG1 1556 aaPredicted RBP17.97■□□□□ 0.47
CLK3-206ENST00000562078 ATP7AQ04656 1500 aa17.96■□□□□ 0.47
CLK3-206ENST00000562078 DUOX2Q9NRD8 1548 aa17.96■□□□□ 0.47
CLK3-206ENST00000562078 NEO1Q92859 1461 aa17.96■□□□□ 0.47
CLK3-206ENST00000562078 ZNF518AQ6AHZ1 1483 aa17.95■□□□□ 0.46
CLK3-206ENST00000562078 HSPA5P11021 654 aaKnown RBP17.95■□□□□ 0.46
CLK3-206ENST00000562078 WASHC2CQ9Y4E1 1318 aa17.95■□□□□ 0.46
CLK3-206ENST00000562078 RTEL1-TNFRSF6BF6WH68 1400 aa17.95■□□□□ 0.46
CLK3-206ENST00000562078 NEFMP07197 916 aa17.95■□□□□ 0.46
CLK3-206ENST00000562078 KIF13AQ9H1H9 1805 aa17.94■□□□□ 0.46
CLK3-206ENST00000562078 LAS1LQ9Y4W2 734 aaKnown RBP17.94■□□□□ 0.46
CLK3-206ENST00000562078 NBPF8Q3BBV2 869 aa17.93■□□□□ 0.46
CLK3-206ENST00000562078 POGZQ7Z3K3 1410 aa17.93■□□□□ 0.46
CLK3-206ENST00000562078 POLR1AO95602 1720 aaPredicted RBP17.92■□□□□ 0.46
CLK3-206ENST00000562078 EIF4G2P78344 907 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLK3-206ENST00000562078 UNC13BO14795 1591 aa17.92■□□□□ 0.46
CLK3-206ENST00000562078 FAM135AQ9P2D6 1515 aa17.91■□□□□ 0.46
CLK3-206ENST00000562078 ERBINQ96RT1 1412 aa17.91■□□□□ 0.46
CLK3-206ENST00000562078 KIDINS220Q9ULH0 1771 aa17.9■□□□□ 0.46
CLK3-206ENST00000562078 PPRC1Q5VV67 1664 aaKnown RBP17.9■□□□□ 0.46
CLK3-206ENST00000562078 KDM5CP41229 1560 aa17.89■□□□□ 0.46
CLK3-206ENST00000562078 HECW2Q9P2P5 1572 aa17.88■□□□□ 0.45
CLK3-206ENST00000562078 RICTORQ6R327 1708 aa17.87■□□□□ 0.45
CLK3-206ENST00000562078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.87■□□□□ 0.455e-6■□□□□ 8.4
CLK3-206ENST00000562078 RAPGEF3O95398 923 aa17.86■□□□□ 0.45
CLK3-206ENST00000562078 USP35Q9P2H5 1018 aa17.86■□□□□ 0.45
CLK3-206ENST00000562078 IQGAP3Q86VI3 1631 aa17.85■□□□□ 0.45
CLK3-206ENST00000562078 MLH3Q9UHC1 1453 aa17.83■□□□□ 0.45
CLK3-206ENST00000562078 ZNF326Q5BKZ1 582 aaKnown RBP17.83■□□□□ 0.44
CLK3-206ENST00000562078 NPM2Q86SE8 214 aaKnown RBP17.83■□□□□ 0.44
CLK3-206ENST00000562078 ABCA6Q8N139 1617 aa17.82■□□□□ 0.44
CLK3-206ENST00000562078 EIF2AK4Q9P2K8 1649 aaKnown RBP17.82■□□□□ 0.44
CLK3-206ENST00000562078 SPATA31E1Q6ZUB1 1445 aa17.81■□□□□ 0.44
CLK3-206ENST00000562078 MAGI2Q86UL8 1455 aa17.8■□□□□ 0.44
CLK3-206ENST00000562078 DHX29Q7Z478 1369 aaKnown RBP17.8■□□□□ 0.44
CLK3-206ENST00000562078 FRMPD1Q5SYB0 1578 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 A2MP01023 1474 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 CCDC7Q96M83 1385 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 DEPDC5O75140 1603 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 CCDC184Q52MB2 194 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 RSPH6AQ9H0K4 717 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 CNTLNQ9NXG0 1405 aa17.79■□□□□ 0.44
CLK3-206ENST00000562078 KIF3BO15066 747 aa17.78■□□□□ 0.44
CLK3-206ENST00000562078 BCORL1Q5H9F3 1711 aa17.78■□□□□ 0.44
CLK3-206ENST00000562078 UHRF1BP1Q6BDS2 1440 aa17.77■□□□□ 0.44
CLK3-206ENST00000562078 GSE1Q14687 1217 aa17.77■□□□□ 0.43
CLK3-206ENST00000562078 RALGAPBQ86X10 1494 aa17.76■□□□□ 0.43
CLK3-206ENST00000562078 PLEKHG5O94827 1062 aa17.76■□□□□ 0.43
CLK3-206ENST00000562078 DIP2CQ9Y2E4 1556 aa17.76■□□□□ 0.43
CLK3-206ENST00000562078 DNAJC5Q9H3Z4 198 aa17.75■□□□□ 0.43
CLK3-206ENST00000562078 USP47Q96K76 1375 aa17.75■□□□□ 0.43
CLK3-206ENST00000562078 CCDC144AA2RUR9 1427 aa17.75■□□□□ 0.43
CLK3-206ENST00000562078 KANK1Q14678 1352 aa17.74■□□□□ 0.43
CLK3-206ENST00000562078 ZMYM4Q5VZL5 1548 aa17.74■□□□□ 0.43
CLK3-206ENST00000562078 ZMYND15Q9H091 742 aa17.73■□□□□ 0.43
CLK3-206ENST00000562078 PLA2R1Q13018 1463 aa17.73■□□□□ 0.43
CLK3-206ENST00000562078 FAM9BQ8IZU0 186 aa17.73■□□□□ 0.43
CLK3-206ENST00000562078 PRDM15P57071 1507 aaPredicted RBP17.72■□□□□ 0.43
CLK3-206ENST00000562078 KIF7Q2M1P5 1343 aa17.72■□□□□ 0.43
CLK3-206ENST00000562078 YEATS2Q9ULM3 1422 aa17.72■□□□□ 0.43
CLK3-206ENST00000562078 KDM2AQ9Y2K7 1162 aa17.72■□□□□ 0.43
CLK3-206ENST00000562078 MROH1Q8NDA8 1641 aa17.71■□□□□ 0.43
CLK3-206ENST00000562078 PPM1GO15355 546 aaPredicted RBP17.71■□□□□ 0.43
CLK3-206ENST00000562078 RNF17Q9BXT8 1623 aaKnown RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms