RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 CDC42BPAQ5VT25 1732 aa9.75□□□□□ -0.85
CAPN3-210ENST00000561817 HFM1A2PYH4 1435 aa9.74□□□□□ -0.85
CAPN3-210ENST00000561817 AKNAQ7Z591 1439 aa9.74□□□□□ -0.85
CAPN3-210ENST00000561817 ITSN2Q9NZM3 1697 aa9.74□□□□□ -0.85
CAPN3-210ENST00000561817 PLEKHD1A6NEE1 506 aa9.74□□□□□ -0.85
CAPN3-210ENST00000561817 SLC39A7Q92504 469 aa9.74□□□□□ -0.85
CAPN3-210ENST00000561817 NAIPQ13075 1403 aa9.73□□□□□ -0.85
CAPN3-210ENST00000561817 C7P10643 843 aa9.73□□□□□ -0.85
CAPN3-210ENST00000561817 DNMT1P26358 1616 aaKnown RBP9.73□□□□□ -0.85
CAPN3-210ENST00000561817 ZNF644Q9H582 1327 aaPredicted RBP9.73□□□□□ -0.85
CAPN3-210ENST00000561817 CLSPNQ9HAW4 1339 aa9.73□□□□□ -0.85
CAPN3-210ENST00000561817 ABCC5O15440 1437 aa9.73□□□□□ -0.85
CAPN3-210ENST00000561817 FAM212AQ96EL1 285 aa9.72□□□□□ -0.85
CAPN3-210ENST00000561817 TAOK2Q9UL54 1235 aa9.72□□□□□ -0.85
CAPN3-210ENST00000561817 DAPK1P53355 1430 aa9.72□□□□□ -0.85
CAPN3-210ENST00000561817 CAMSAP2Q08AD1 1489 aa9.72□□□□□ -0.85
CAPN3-210ENST00000561817 METRNQ9UJH8 293 aa9.71□□□□□ -0.86
CAPN3-210ENST00000561817 MAPKBP1O60336 1514 aa9.71□□□□□ -0.86
CAPN3-210ENST00000561817 DIP2BQ9P265 1576 aa9.71□□□□□ -0.86
CAPN3-210ENST00000561817 GCC2Q8IWJ2 1684 aa9.71□□□□□ -0.86
CAPN3-210ENST00000561817 ROCK1Q13464 1354 aa9.7□□□□□ -0.86
CAPN3-210ENST00000561817 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.7□□□□□ -0.86
CAPN3-210ENST00000561817 TTC37Q6PGP7 1564 aa9.7□□□□□ -0.86
CAPN3-210ENST00000561817 PREX2Q70Z35 1606 aa9.7□□□□□ -0.86
CAPN3-210ENST00000561817 POTEB2H3BUK9 544 aa9.69□□□□□ -0.86
CAPN3-210ENST00000561817 TIE1P35590 1138 aa9.69□□□□□ -0.86
CAPN3-210ENST00000561817 ATN1P54259 1190 aaPredicted RBP9.69□□□□□ -0.86
CAPN3-210ENST00000561817 BCANQ96GW7 911 aa9.69□□□□□ -0.86
CAPN3-210ENST00000561817 SGIP1Q9BQI5 828 aa9.69□□□□□ -0.86
CAPN3-210ENST00000561817 CDC42BPBQ9Y5S2 1711 aa9.69□□□□□ -0.86
CAPN3-210ENST00000561817 CROCC2H7BZ55 1655 aa9.68□□□□□ -0.86
CAPN3-210ENST00000561817 BMP2KQ9NSY1 1161 aaPredicted RBP9.68□□□□□ -0.86
CAPN3-210ENST00000561817 CFDP1Q9UEE9 299 aaPredicted RBP9.68□□□□□ -0.86
CAPN3-210ENST00000561817 KDM6BO15054 1643 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 ADGRL2O95490 1459 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 MBD5Q9P267 1494 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 ASXL2Q76L83 1435 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 TRPC6Q9Y210 931 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 PCDHB13Q9Y5F0 798 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 ARHGEF5Q12774 1597 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 SAMD9LQ8IVG5 1584 aa9.67□□□□□ -0.86
CAPN3-210ENST00000561817 OTUD5Q96G74 571 aa9.66□□□□□ -0.86
CAPN3-210ENST00000561817 SHANK2Q9UPX8 1470 aa9.66□□□□□ -0.86
CAPN3-210ENST00000561817 TIMELESSQ9UNS1 1208 aa9.65□□□□□ -0.86
CAPN3-210ENST00000561817 WDR7Q9Y4E6 1490 aa9.65□□□□□ -0.87
CAPN3-210ENST00000561817 NCOA1Q15788 1441 aa9.65□□□□□ -0.87
CAPN3-210ENST00000561817 ADGBQ8N7X0 1667 aa9.64□□□□□ -0.87
CAPN3-210ENST00000561817 VASPP50552 380 aaPredicted RBP9.64□□□□□ -0.87
CAPN3-210ENST00000561817 DCAF8Q5TAQ9 597 aa9.64□□□□□ -0.87
CAPN3-210ENST00000561817 CHIC2Q9UKJ5 165 aa9.64□□□□□ -0.87
CAPN3-210ENST00000561817 MYO5CQ9NQX4 1742 aa9.64□□□□□ -0.87
CAPN3-210ENST00000561817 DENND4BO75064 1496 aaPredicted RBP9.64□□□□□ -0.87
CAPN3-210ENST00000561817 PLCH2O75038 1416 aa9.64□□□□□ -0.87
CAPN3-210ENST00000561817 ARAP3Q8WWN8 1544 aa9.63□□□□□ -0.87
CAPN3-210ENST00000561817 RRP7BPQ9NSQ0 103 aa9.63□□□□□ -0.87
CAPN3-210ENST00000561817 MAP3K4Q9Y6R4 1608 aa9.63□□□□□ -0.87
CAPN3-210ENST00000561817 TTLL13PA6NNM8 815 aa9.62□□□□□ -0.87
CAPN3-210ENST00000561817 KLHL34Q8N239 644 aa9.62□□□□□ -0.87
CAPN3-210ENST00000561817 KIAA1107Q9UPP5 1409 aa9.62□□□□□ -0.87
CAPN3-210ENST00000561817 ARHGEF12Q9NZN5 1544 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 PPRC1Q5VV67 1664 aaKnown RBP9.61□□□□□ -0.87
CAPN3-210ENST00000561817 ABCA9Q8IUA7 1624 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 FAM69CQ0P6D2 419 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 MAMSTRQ6ZN01 415 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 KCNH8Q96L42 1107 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 MAST1Q9Y2H9 1570 aa9.61□□□□□ -0.87
CAPN3-210ENST00000561817 C9orf84Q5VXU9 1444 aa9.6□□□□□ -0.87
CAPN3-210ENST00000561817 ZNF777Q9ULD5 760 aaPredicted RBP9.6□□□□□ -0.87
CAPN3-210ENST00000561817 ARHGAP5Q13017 1502 aa9.6□□□□□ -0.87
CAPN3-210ENST00000561817 CCDC141Q6ZP82 1450 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 PLEKHH2Q8IVE3 1493 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 GLI2P10070 1586 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 HNRNPMP52272 730 aaKnown RBP eCLIP9.59□□□□□ -0.87
CAPN3-210ENST00000561817 IFNL1Q8IU54 200 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 ABCC1P33527 1531 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 SYCP2Q9BX26 1530 aa9.59□□□□□ -0.87
CAPN3-210ENST00000561817 ANKRD30AQ9BXX3 1397 aa9.58□□□□□ -0.88
CAPN3-210ENST00000561817 PLCB2Q00722 1185 aa9.57□□□□□ -0.88
CAPN3-210ENST00000561817 RSPH4AQ5TD94 716 aa9.57□□□□□ -0.88
CAPN3-210ENST00000561817 ACIN1Q9UKV3 1341 aaKnown RBP9.56□□□□□ -0.88
CAPN3-210ENST00000561817 PZPP20742 1482 aa9.56□□□□□ -0.88
CAPN3-210ENST00000561817 EFCAB2Q5VUJ9 269 aa9.56□□□□□ -0.88
CAPN3-210ENST00000561817 TRIM35Q9UPQ4 493 aa9.56□□□□□ -0.88
CAPN3-210ENST00000561817 PLXNC1O60486 1568 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 CFAP74Q9C0B2 1584 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 SEC24BO95487 1268 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 POTEJP0CG39 1038 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 PYGBP11216 843 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 IER5LQ5T953 404 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 SIN3AQ96ST3 1273 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 KDM5DQ9BY66 1539 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 ANKRD50Q9ULJ7 1429 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 TRAPPC8Q9Y2L5 1435 aa9.55□□□□□ -0.88
CAPN3-210ENST00000561817 POTEFA5A3E0 1075 aa9.54□□□□□ -0.88
CAPN3-210ENST00000561817 GSE1Q14687 1217 aa9.54□□□□□ -0.88
CAPN3-210ENST00000561817 MPHOSPH9Q99550 1183 aa9.54□□□□□ -0.88
CAPN3-210ENST00000561817 TMEM106CQ9BVX2 250 aa9.54□□□□□ -0.88
CAPN3-210ENST00000561817 SCUBE2Q9NQ36 999 aa9.54□□□□□ -0.88
CAPN3-210ENST00000561817 KIF15Q9NS87 1388 aa9.53□□□□□ -0.88
CAPN3-210ENST00000561817 TSPY4P0CV99 314 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms