RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NCOA1Q15788 1441 aa16.05■□□□□ 0.16
CLK3-205ENST00000561673 PTPRTO14522 1441 aa16.04■□□□□ 0.16
CLK3-205ENST00000561673 ABCC5O15440 1437 aa16.04■□□□□ 0.16
CLK3-205ENST00000561673 FGD6Q6ZV73 1430 aa16.03■□□□□ 0.16
CLK3-205ENST00000561673 NCKAP5LQ9HCH0 1330 aa16.03■□□□□ 0.16
CLK3-205ENST00000561673 KDM5DQ9BY66 1539 aa16.03■□□□□ 0.16
CLK3-205ENST00000561673 CAMSAP1Q5T5Y3 1602 aa16.02■□□□□ 0.16
CLK3-205ENST00000561673 PTPN23Q9H3S7 1636 aa16.02■□□□□ 0.16
CLK3-205ENST00000561673 RRP7BPQ9NSQ0 103 aa16.02■□□□□ 0.16
CLK3-205ENST00000561673 FAM135AQ9P2D6 1515 aa16.01■□□□□ 0.15
CLK3-205ENST00000561673 PZPP20742 1482 aa16.01■□□□□ 0.15
CLK3-205ENST00000561673 MYO3AQ8NEV4 1616 aa16.01■□□□□ 0.15
CLK3-205ENST00000561673 TNRQ92752 1358 aa16■□□□□ 0.15
CLK3-205ENST00000561673 TCOF1Q13428 1488 aaKnown RBP16■□□□□ 0.15
CLK3-205ENST00000561673 DAPK1P53355 1430 aa16■□□□□ 0.15
CLK3-205ENST00000561673 KIF15Q9NS87 1388 aa16■□□□□ 0.15
CLK3-205ENST00000561673 PKD2Q13563 968 aa15.99■□□□□ 0.15
CLK3-205ENST00000561673 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
CLK3-205ENST00000561673 CEP170BQ9Y4F5 1589 aaPredicted RBP15.99■□□□□ 0.15
CLK3-205ENST00000561673 DUOX2Q9NRD8 1548 aa15.99■□□□□ 0.15
CLK3-205ENST00000561673 SHANK2Q9UPX8 1470 aa15.98■□□□□ 0.15
CLK3-205ENST00000561673 RNF17Q9BXT8 1623 aaKnown RBP15.97■□□□□ 0.15
CLK3-205ENST00000561673 A2ML1A8K2U0 1454 aa15.97■□□□□ 0.15
CLK3-205ENST00000561673 ZNF142P52746 1687 aaPredicted RBP15.97■□□□□ 0.15
CLK3-205ENST00000561673 PLA2R1Q13018 1463 aa15.97■□□□□ 0.15
CLK3-205ENST00000561673 ABCC3O15438 1527 aa15.96■□□□□ 0.15
CLK3-205ENST00000561673 EIF2AK4Q9P2K8 1649 aaKnown RBP15.96■□□□□ 0.15
CLK3-205ENST00000561673 FAM50AQ14320 339 aaKnown RBP15.95■□□□□ 0.14
CLK3-205ENST00000561673 DNMT1P26358 1616 aaKnown RBP15.94■□□□□ 0.14
CLK3-205ENST00000561673 MROH1Q8NDA8 1641 aa15.94■□□□□ 0.14
CLK3-205ENST00000561673 ERBINQ96RT1 1412 aa15.94■□□□□ 0.14
CLK3-205ENST00000561673 CROCC2H7BZ55 1655 aa15.93■□□□□ 0.14
CLK3-205ENST00000561673 ANKRD30AQ9BXX3 1397 aa15.93■□□□□ 0.14
CLK3-205ENST00000561673 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.93■□□□□ 0.14
CLK3-205ENST00000561673 THEMISQ8N1K5 641 aaPredicted RBP15.92■□□□□ 0.14
CLK3-205ENST00000561673 LTBP4Q8N2S1 1624 aa15.91■□□□□ 0.14
CLK3-205ENST00000561673 ZNF335Q9H4Z2 1342 aaPredicted RBP15.91■□□□□ 0.14
CLK3-205ENST00000561673 NLRP1Q9C000 1473 aa15.91■□□□□ 0.14
CLK3-205ENST00000561673 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLK3-205ENST00000561673 ZC3H13Q5T200 1668 aaKnown RBP15.89■□□□□ 0.13
CLK3-205ENST00000561673 ANKLE2Q86XL3 938 aa15.89■□□□□ 0.13
CLK3-205ENST00000561673 ERVK-7P63135 1459 aa15.89■□□□□ 0.13
CLK3-205ENST00000561673 SPATA31D1Q6ZQQ2 1576 aa15.88■□□□□ 0.13
CLK3-205ENST00000561673 PPARGC1BQ86YN6 1023 aaKnown RBP15.88■□□□□ 0.13
CLK3-205ENST00000561673 UGGT1Q9NYU2 1555 aa15.87■□□□□ 0.13
CLK3-205ENST00000561673 PRDM15P57071 1507 aaPredicted RBP15.87■□□□□ 0.13
CLK3-205ENST00000561673 KANK1Q14678 1352 aa15.87■□□□□ 0.13
CLK3-205ENST00000561673 ARHGAP31Q2M1Z3 1444 aa15.86■□□□□ 0.13
CLK3-205ENST00000561673 ADGRL2O95490 1459 aa15.86■□□□□ 0.13
CLK3-205ENST00000561673 CEP152O94986 1710 aa15.85■□□□□ 0.13
CLK3-205ENST00000561673 DEPDC5O75140 1603 aa15.83■□□□□ 0.13
CLK3-205ENST00000561673 ADRA2BP18089 450 aa15.83■□□□□ 0.12
CLK3-205ENST00000561673 NEURL4Q96JN8 1562 aa15.83■□□□□ 0.12
CLK3-205ENST00000561673 ANKRD50Q9ULJ7 1429 aa15.82■□□□□ 0.12
CLK3-205ENST00000561673 IQSEC2Q5JU85 1478 aa15.82■□□□□ 0.12
CLK3-205ENST00000561673 VWDEQ8N2E2 1590 aa15.8■□□□□ 0.12
CLK3-205ENST00000561673 LMTK2Q8IWU2 1503 aa15.8■□□□□ 0.12
CLK3-205ENST00000561673 MED14O60244 1454 aa15.8■□□□□ 0.12
CLK3-205ENST00000561673 NPHP4O75161 1426 aaPredicted RBP15.8■□□□□ 0.12
CLK3-205ENST00000561673 CFAP65Q6ZU64 1925 aaKnown RBP15.8■□□□□ 0.12
CLK3-205ENST00000561673 FOXD1Q16676 465 aa15.79■□□□□ 0.12
CLK3-205ENST00000561673 POLR1AO95602 1720 aaPredicted RBP15.79■□□□□ 0.12
CLK3-205ENST00000561673 LTKP29376 864 aa15.78■□□□□ 0.12
CLK3-205ENST00000561673 ITGAEP38570 1179 aa15.78■□□□□ 0.12
CLK3-205ENST00000561673 IDI1Q13907 227 aa15.78■□□□□ 0.12
CLK3-205ENST00000561673 ROCK1Q13464 1354 aa15.76■□□□□ 0.11
CLK3-205ENST00000561673 UBAP1LF5GYI3 381 aa15.76■□□□□ 0.11
CLK3-205ENST00000561673 TXNDC2Q86VQ3 553 aa15.76■□□□□ 0.11
CLK3-205ENST00000561673 UBR1Q8IWV7 1749 aa15.75■□□□□ 0.11
CLK3-205ENST00000561673 STAG3Q9UJ98 1225 aa15.75■□□□□ 0.11
CLK3-205ENST00000561673 NOS1P29475 1434 aa15.74■□□□□ 0.11
CLK3-205ENST00000561673 EFCAB6Q5THR3 1501 aa15.73■□□□□ 0.11
CLK3-205ENST00000561673 ARHGAP23Q9P227 1491 aa15.73■□□□□ 0.11
CLK3-205ENST00000561673 EID1Q9Y6B2 187 aa15.73■□□□□ 0.11
CLK3-205ENST00000561673 TMEM2Q9UHN6 1383 aa15.73■□□□□ 0.11
CLK3-205ENST00000561673 SLIT1O75093 1534 aa15.73■□□□□ 0.11
CLK3-205ENST00000561673 SCAF11Q99590 1463 aaKnown RBP15.72■□□□□ 0.11
CLK3-205ENST00000561673 SLC52A1Q9NWF4 448 aa15.72■□□□□ 0.11
CLK3-205ENST00000561673 IQGAP1P46940 1657 aa15.72■□□□□ 0.11
CLK3-205ENST00000561673 CPS1P31327 1500 aa15.72■□□□□ 0.11
CLK3-205ENST00000561673 PIK3C2BO00750 1634 aa15.72■□□□□ 0.11
CLK3-205ENST00000561673 SYNMO15061 1565 aa15.71■□□□□ 0.11
CLK3-205ENST00000561673 RPRD2Q5VT52 1461 aaKnown RBP15.7■□□□□ 0.1
CLK3-205ENST00000561673 NUP155O75694 1391 aa15.67■□□□□ 0.1
CLK3-205ENST00000561673 TOM1O60784 492 aa15.67■□□□□ 0.1
CLK3-205ENST00000561673 RRBP1Q9P2E9 1410 aaKnown RBP15.67■□□□□ 0.1
CLK3-205ENST00000561673 UNC13BO14795 1591 aa15.66■□□□□ 0.1
CLK3-205ENST00000561673 PIP4K2BP78356 416 aa15.66■□□□□ 0.1
CLK3-205ENST00000561673 TET3O43151 1660 aa15.66■□□□□ 0.1
CLK3-205ENST00000561673 KDM5AP29375 1690 aaKnown RBP15.65■□□□□ 0.1
CLK3-205ENST00000561673 SCAF1Q9H7N4 1312 aaKnown RBP15.64■□□□□ 0.09
CLK3-205ENST00000561673 ADGRB3O60242 1522 aa15.63■□□□□ 0.09
CLK3-205ENST00000561673 LRRC7Q96NW7 1537 aa15.63■□□□□ 0.09
CLK3-205ENST00000561673 STRCP1A6NGW2 1772 aa15.63■□□□□ 0.09
CLK3-205ENST00000561673 SLC26A8Q96RN1 970 aa15.63■□□□□ 0.09
CLK3-205ENST00000561673 IQGAP3Q86VI3 1631 aa15.61■□□□□ 0.09
CLK3-205ENST00000561673 GCC2Q8IWJ2 1684 aa15.61■□□□□ 0.09
CLK3-205ENST00000561673 CHGAP10645 457 aaKnown RBP15.61■□□□□ 0.09
CLK3-205ENST00000561673 HDGFP51858 240 aaKnown RBP15.6■□□□□ 0.09
CLK3-205ENST00000561673 BCANQ96GW7 911 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms