RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 PZPP20742 1482 aa13.48□□□□□ -0.25
PALB2-202ENST00000561514 KDM5DQ9BY66 1539 aa13.48□□□□□ -0.25
PALB2-202ENST00000561514 VPS8Q8N3P4 1428 aa13.47□□□□□ -0.25
PALB2-202ENST00000561514 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
PALB2-202ENST00000561514 MAP3K1Q13233 1512 aa13.46□□□□□ -0.25
PALB2-202ENST00000561514 LRRC9Q6ZRR7 1453 aa13.46□□□□□ -0.25
PALB2-202ENST00000561514 TNRQ92752 1358 aa13.45□□□□□ -0.26
PALB2-202ENST00000561514 ZNF335Q9H4Z2 1342 aaPredicted RBP13.44□□□□□ -0.26
PALB2-202ENST00000561514 DNMT1P26358 1616 aaKnown RBP13.44□□□□□ -0.26
PALB2-202ENST00000561514 MAST1Q9Y2H9 1570 aa13.44□□□□□ -0.26
PALB2-202ENST00000561514 KIF3BO15066 747 aa13.43□□□□□ -0.26
PALB2-202ENST00000561514 ADRA2BP18089 450 aa13.43□□□□□ -0.26
PALB2-202ENST00000561514 NLRP1Q9C000 1473 aa13.42□□□□□ -0.26
PALB2-202ENST00000561514 MIA2Q96PC5 1412 aa13.42□□□□□ -0.26
PALB2-202ENST00000561514 RNF17Q9BXT8 1623 aaKnown RBP13.42□□□□□ -0.26
PALB2-202ENST00000561514 NEURL4Q96JN8 1562 aa13.41□□□□□ -0.26
PALB2-202ENST00000561514 FBXO31Q5XUX0 539 aaPredicted RBP13.41□□□□□ -0.26
PALB2-202ENST00000561514 WASHC2CQ9Y4E1 1318 aa13.39□□□□□ -0.27
PALB2-202ENST00000561514 MYOM3Q5VTT5 1437 aa13.39□□□□□ -0.27
PALB2-202ENST00000561514 MED14O60244 1454 aa13.39□□□□□ -0.27
PALB2-202ENST00000561514 ABCC3O15438 1527 aa13.39□□□□□ -0.27
PALB2-202ENST00000561514 DISP3Q9P2K9 1392 aa13.38□□□□□ -0.27
PALB2-202ENST00000561514 TSPY4P0CV99 314 aa13.38□□□□□ -0.27
PALB2-202ENST00000561514 TSPY10P0CW01 314 aa13.38□□□□□ -0.27
PALB2-202ENST00000561514 SPATA31D1Q6ZQQ2 1576 aa13.37□□□□□ -0.27
PALB2-202ENST00000561514 MROH1Q8NDA8 1641 aa13.37□□□□□ -0.27
PALB2-202ENST00000561514 EIF2AK4Q9P2K8 1649 aaKnown RBP13.37□□□□□ -0.27
PALB2-202ENST00000561514 CPS1P31327 1500 aa13.37□□□□□ -0.27
PALB2-202ENST00000561514 KANK4Q5T7N3 995 aaPredicted RBP13.36□□□□□ -0.27
PALB2-202ENST00000561514 ILDR2Q71H61 639 aa13.36□□□□□ -0.27
PALB2-202ENST00000561514 SHANK2Q9UPX8 1470 aa13.36□□□□□ -0.27
PALB2-202ENST00000561514 DEPDC5O75140 1603 aa13.35□□□□□ -0.27
PALB2-202ENST00000561514 ZC3H13Q5T200 1668 aaKnown RBP13.35□□□□□ -0.27
PALB2-202ENST00000561514 THEMISQ8N1K5 641 aaPredicted RBP13.35□□□□□ -0.27
PALB2-202ENST00000561514 VWDEQ8N2E2 1590 aa13.35□□□□□ -0.27
PALB2-202ENST00000561514 UGGT1Q9NYU2 1555 aa13.35□□□□□ -0.27
PALB2-202ENST00000561514 ERVK-7P63135 1459 aa13.35□□□□□ -0.27
PALB2-202ENST00000561514 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.34□□□□□ -0.27
PALB2-202ENST00000561514 UBAP1LF5GYI3 381 aa13.34□□□□□ -0.27
PALB2-202ENST00000561514 ARHGAP31Q2M1Z3 1444 aa13.33□□□□□ -0.28
PALB2-202ENST00000561514 ANKLE2Q86XL3 938 aa13.33□□□□□ -0.28
PALB2-202ENST00000561514 DUOX2Q9NRD8 1548 aa13.33□□□□□ -0.28
PALB2-202ENST00000561514 POLR1AO95602 1720 aaPredicted RBP13.33□□□□□ -0.28
PALB2-202ENST00000561514 NPHP4O75161 1426 aaPredicted RBP13.32□□□□□ -0.28
PALB2-202ENST00000561514 PRDM15P57071 1507 aaPredicted RBP13.32□□□□□ -0.28
PALB2-202ENST00000561514 ERBINQ96RT1 1412 aa13.31□□□□□ -0.28
PALB2-202ENST00000561514 LOC105371045A0A1W2PR82 267 aa13.31□□□□□ -0.28
PALB2-202ENST00000561514 SOCS7O14512 581 aa13.31□□□□□ -0.28
PALB2-202ENST00000561514 ABCC5O15440 1437 aa13.3□□□□□ -0.28
PALB2-202ENST00000561514 KIF15Q9NS87 1388 aa13.3□□□□□ -0.28
PALB2-202ENST00000561514 ARHGAP23Q9P227 1491 aa13.29□□□□□ -0.28
PALB2-202ENST00000561514 ALKQ9UM73 1620 aa13.28□□□□□ -0.28
PALB2-202ENST00000561514 SLIT1O75093 1534 aa13.28□□□□□ -0.28
PALB2-202ENST00000561514 DAPK1P53355 1430 aa13.26□□□□□ -0.29
PALB2-202ENST00000561514 FGD6Q6ZV73 1430 aa13.26□□□□□ -0.29
PALB2-202ENST00000561514 LMTK2Q8IWU2 1503 aa13.26□□□□□ -0.29
PALB2-202ENST00000561514 IQGAP1P46940 1657 aa13.25□□□□□ -0.29
PALB2-202ENST00000561514 SCAF11Q99590 1463 aaKnown RBP13.25□□□□□ -0.29
PALB2-202ENST00000561514 TOM1O60784 492 aa13.25□□□□□ -0.29
PALB2-202ENST00000561514 CROCC2H7BZ55 1655 aa13.24□□□□□ -0.29
PALB2-202ENST00000561514 LRRC7Q96NW7 1537 aa13.24□□□□□ -0.29
PALB2-202ENST00000561514 PTPN23Q9H3S7 1636 aa13.24□□□□□ -0.29
PALB2-202ENST00000561514 SYNMO15061 1565 aa13.24□□□□□ -0.29
PALB2-202ENST00000561514 HSPA1LP34931 641 aa13.23□□□□□ -0.29
PALB2-202ENST00000561514 UBR1Q8IWV7 1749 aa13.22□□□□□ -0.29
PALB2-202ENST00000561514 ADGRL2O95490 1459 aa13.22□□□□□ -0.29
PALB2-202ENST00000561514 LTKP29376 864 aa13.21□□□□□ -0.29
PALB2-202ENST00000561514 CEP152O94986 1710 aa13.21□□□□□ -0.3
PALB2-202ENST00000561514 TMEM2Q9UHN6 1383 aa13.2□□□□□ -0.3
PALB2-202ENST00000561514 NOS1P29475 1434 aa13.2□□□□□ -0.3
PALB2-202ENST00000561514 ANKRD30AQ9BXX3 1397 aa13.2□□□□□ -0.3
PALB2-202ENST00000561514 RRP7BPQ9NSQ0 103 aa13.19□□□□□ -0.3
PALB2-202ENST00000561514 MED1Q15648 1581 aaPredicted RBP13.19□□□□□ -0.3
PALB2-202ENST00000561514 KDM5AP29375 1690 aaKnown RBP13.18□□□□□ -0.3
PALB2-202ENST00000561514 STRCP1A6NGW2 1772 aa13.18□□□□□ -0.3
PALB2-202ENST00000561514 KANK1Q14678 1352 aa13.18□□□□□ -0.3
PALB2-202ENST00000561514 PIP4K2BP78356 416 aa13.17□□□□□ -0.3
PALB2-202ENST00000561514 EFCAB6Q5THR3 1501 aa13.17□□□□□ -0.3
PALB2-202ENST00000561514 APLP2Q06481 763 aa13.16□□□□□ -0.3
PALB2-202ENST00000561514 TXNDC2Q86VQ3 553 aa13.16□□□□□ -0.3
PALB2-202ENST00000561514 PIK3C2BO00750 1634 aa13.15□□□□□ -0.3
PALB2-202ENST00000561514 RPRD2Q5VT52 1461 aaKnown RBP13.15□□□□□ -0.3
PALB2-202ENST00000561514 EID1Q9Y6B2 187 aa13.14□□□□□ -0.31
PALB2-202ENST00000561514 SCAF1Q9H7N4 1312 aaKnown RBP13.13□□□□□ -0.31
PALB2-202ENST00000561514 TET3O43151 1660 aa13.13□□□□□ -0.31
PALB2-202ENST00000561514 IDI1Q13907 227 aa13.13□□□□□ -0.31
PALB2-202ENST00000561514 ADGRB3O60242 1522 aa13.13□□□□□ -0.31
PALB2-202ENST00000561514 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.12□□□□□ -0.314e-6■□□□□ 11.1
PALB2-202ENST00000561514 ANKRD50Q9ULJ7 1429 aa13.12□□□□□ -0.31
PALB2-202ENST00000561514 SLC52A1Q9NWF4 448 aa13.11□□□□□ -0.31
PALB2-202ENST00000561514 FAM135BQ49AJ0 1406 aa13.11□□□□□ -0.31
PALB2-202ENST00000561514 CHIC2Q9UKJ5 165 aa13.1□□□□□ -0.31
PALB2-202ENST00000561514 ZFYVE9O95405 1425 aa13.1□□□□□ -0.31
PALB2-202ENST00000561514 NWD1Q149M9 1564 aa13.1□□□□□ -0.31
PALB2-202ENST00000561514 NKTRP30414 1462 aaKnown RBP13.1□□□□□ -0.31
PALB2-202ENST00000561514 KCNA6P17658 529 aa13.09□□□□□ -0.31
PALB2-202ENST00000561514 TMEM94Q12767 1356 aa13.08□□□□□ -0.31
PALB2-202ENST00000561514 ROCK1Q13464 1354 aa13.07□□□□□ -0.32
PALB2-202ENST00000561514 PLEKHG1Q9ULL1 1385 aa13.07□□□□□ -0.32
PALB2-202ENST00000561514 STAG3Q9UJ98 1225 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms