RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 CDHR5Q9HBB8 845 aa8.52□□□□□ -1.05
HERC1-215ENST00000561436 PLSCR2Q9NRY7 297 aa8.52□□□□□ -1.05
HERC1-215ENST00000561436 MAP3K7O43318 606 aa8.51□□□□□ -1.05
HERC1-215ENST00000561436 OSBPP22059 807 aa8.51□□□□□ -1.05
HERC1-215ENST00000561436 PTPREP23469 700 aa8.49□□□□□ -1.05
HERC1-215ENST00000561436 EN1Q05925 392 aaPredicted RBP8.49□□□□□ -1.05
HERC1-215ENST00000561436 C6orf132Q5T0Z8 1188 aa8.49□□□□□ -1.05
HERC1-215ENST00000561436 BCANQ96GW7 911 aa8.49□□□□□ -1.05
HERC1-215ENST00000561436 PCDH10Q9P2E7 1040 aa8.49□□□□□ -1.05
HERC1-215ENST00000561436 PBX2P40425 430 aa8.48□□□□□ -1.05
HERC1-215ENST00000561436 PROX2Q3B8N5 592 aa8.48□□□□□ -1.05
HERC1-215ENST00000561436 SPNS2Q8IVW8 549 aa8.48□□□□□ -1.05
HERC1-215ENST00000561436 FBXW7Q969H0 707 aa8.48□□□□□ -1.05
HERC1-215ENST00000561436 EPAS1Q99814 870 aa8.48□□□□□ -1.05
HERC1-215ENST00000561436 TESPA1A2RU30 521 aaPredicted RBP8.46□□□□□ -1.06
HERC1-215ENST00000561436 RBM26Q5T8P6 1007 aaKnown RBP8.46□□□□□ -1.06
HERC1-215ENST00000561436 ADGRD1Q6QNK2 874 aa8.45□□□□□ -1.06
HERC1-215ENST00000561436 ZBED2Q9BTP6 218 aa8.44□□□□□ -1.06
HERC1-215ENST00000561436 PPP1R3GB7ZBB8 358 aa8.43□□□□□ -1.06
HERC1-215ENST00000561436 KCNH8Q96L42 1107 aa8.43□□□□□ -1.06
HERC1-215ENST00000561436 VPS9D1Q9Y2B5 631 aa8.43□□□□□ -1.06
HERC1-215ENST00000561436 NUTM2FA1L443 756 aa8.41□□□□□ -1.06
HERC1-215ENST00000561436 FAM198AQ9UFP1 575 aa8.41□□□□□ -1.06
HERC1-215ENST00000561436 C3orf80F5H4A9 247 aa8.4□□□□□ -1.06
HERC1-215ENST00000561436 MMRN1Q13201 1228 aa8.4□□□□□ -1.06
HERC1-215ENST00000561436 NPDC1Q9NQX5 325 aaPredicted RBP8.4□□□□□ -1.06
HERC1-215ENST00000561436 HRO43593 1189 aa8.39□□□□□ -1.07
HERC1-215ENST00000561436 TSKSQ9UJT2 592 aa8.39□□□□□ -1.07
HERC1-215ENST00000561436 SMAPO00193 183 aa8.38□□□□□ -1.07
HERC1-215ENST00000561436 SEPT9Q9UHD8 586 aaPredicted RBP8.38□□□□□ -1.07
HERC1-215ENST00000561436 TK2O00142 265 aa8.37□□□□□ -1.07
HERC1-215ENST00000561436 CDCA7LQ96GN5 454 aa8.37□□□□□ -1.07
HERC1-215ENST00000561436 KIAA1468Q9P260 1216 aa8.37□□□□□ -1.07
HERC1-215ENST00000561436 MYT1LQ9UL68 1186 aa8.37□□□□□ -1.07
HERC1-215ENST00000561436 TRIM6-TRIM34B2RNG4 842 aa8.36□□□□□ -1.07
HERC1-215ENST00000561436 FAM161AQ3B820 660 aa8.36□□□□□ -1.07
HERC1-215ENST00000561436 PADI6Q6TGC4 694 aa8.36□□□□□ -1.07
HERC1-215ENST00000561436 FECHP22830 423 aa8.34□□□□□ -1.07
HERC1-215ENST00000561436 PRSS12P56730 875 aa8.34□□□□□ -1.07
HERC1-215ENST00000561436 PTGDRQ13258 359 aa8.34□□□□□ -1.07
HERC1-215ENST00000561436 BHMG1C9JSJ3 638 aaPredicted RBP8.33□□□□□ -1.08
HERC1-215ENST00000561436 RNF166Q96A37 237 aaPredicted RBP8.33□□□□□ -1.08
HERC1-215ENST00000561436 KCTD12Q96CX2 325 aaKnown RBP8.33□□□□□ -1.08
HERC1-215ENST00000561436 SLC4A5Q9BY07 1137 aa8.33□□□□□ -1.08
HERC1-215ENST00000561436 GPR37O15354 613 aa8.32□□□□□ -1.08
HERC1-215ENST00000561436 RABGEF1Q9UJ41 708 aa8.32□□□□□ -1.08
HERC1-215ENST00000561436 SMYD5Q6GMV2 418 aa8.31□□□□□ -1.08
HERC1-215ENST00000561436 GPIHBP1Q8IV16 184 aa8.31□□□□□ -1.08
HERC1-215ENST00000561436 MRPL50Q8N5N7 158 aaKnown RBP8.31□□□□□ -1.08
HERC1-215ENST00000561436 STAC3Q96MF2 364 aa8.31□□□□□ -1.08
HERC1-215ENST00000561436 PNMA3Q9UL41 463 aa8.3□□□□□ -1.08
HERC1-215ENST00000561436 LMOD2Q6P5Q4 547 aa8.29□□□□□ -1.08
HERC1-215ENST00000561436 NUDT18Q6ZVK8 323 aa8.29□□□□□ -1.08
HERC1-215ENST00000561436 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.29□□□□□ -1.08
HERC1-215ENST00000561436 FCHSD2O94868 740 aa8.28□□□□□ -1.08
HERC1-215ENST00000561436 CERKQ8TCT0 537 aa8.28□□□□□ -1.08
HERC1-215ENST00000561436 NBPF3Q9H094 633 aa8.28□□□□□ -1.08
HERC1-215ENST00000561436 GOLGA8CPA6NN73 597 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 BCAMP50895 628 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 PACS2Q86VP3 889 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 TTC13Q8NBP0 860 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 NLRP7Q8WX94 980 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 TATDN2Q93075 761 aa8.27□□□□□ -1.09
HERC1-215ENST00000561436 PTPN5P54829 565 aa8.26□□□□□ -1.09
HERC1-215ENST00000561436 WNT2BQ93097 391 aa8.26□□□□□ -1.09
HERC1-215ENST00000561436 ZFRQ96KR1 1074 aaKnown RBP8.25□□□□□ -1.09
HERC1-215ENST00000561436 NBPF26B4DH59 902 aa8.24□□□□□ -1.09
HERC1-215ENST00000561436 TULP1O00294 542 aaPredicted RBP8.24□□□□□ -1.09
HERC1-215ENST00000561436 ADGRG1Q9Y653 693 aa8.24□□□□□ -1.09
HERC1-215ENST00000561436 GNPATO15228 680 aa8.23□□□□□ -1.09
HERC1-215ENST00000561436 HIC1Q14526 733 aa8.23□□□□□ -1.09
HERC1-215ENST00000561436 FAM98CQ17RN3 349 aaKnown RBP8.23□□□□□ -1.09
HERC1-215ENST00000561436 ONECUT3O60422 494 aaPredicted RBP8.22□□□□□ -1.09
HERC1-215ENST00000561436 THSD4Q6ZMP0 1018 aa8.22□□□□□ -1.09
HERC1-215ENST00000561436 SAMD7Q7Z3H4 446 aa8.22□□□□□ -1.09
HERC1-215ENST00000561436 RBM27Q9P2N5 1060 aaKnown RBP8.22□□□□□ -1.09
HERC1-215ENST00000561436 RNF40O75150 1001 aa8.21□□□□□ -1.1
HERC1-215ENST00000561436 ANKK1Q8NFD2 765 aa8.21□□□□□ -1.1
HERC1-215ENST00000561436 EYA1Q99502 592 aa8.21□□□□□ -1.1
HERC1-215ENST00000561436 LAPTM4BQ86VI4 370 aa8.2□□□□□ -1.1
HERC1-215ENST00000561436 SWT1Q5T5J6 900 aaKnown RBP8.19□□□□□ -1.1
HERC1-215ENST00000561436 ZC3H15Q8WU90 426 aaKnown RBP8.19□□□□□ -1.1
HERC1-215ENST00000561436 PHOX2BQ99453 314 aa8.19□□□□□ -1.1
HERC1-215ENST00000561436 RCCD1A6NED2 376 aa8.17□□□□□ -1.1
HERC1-215ENST00000561436 SOWAHBA6NEL2 793 aa8.17□□□□□ -1.1
HERC1-215ENST00000561436 LRCH3Q96II8 777 aa8.17□□□□□ -1.1
HERC1-215ENST00000561436 WBP1LQ9NX94 342 aa8.17□□□□□ -1.1
HERC1-215ENST00000561436 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.17□□□□□ -1.1
HERC1-215ENST00000561436 HPS5Q9UPZ3 1129 aa8.17□□□□□ -1.1
HERC1-215ENST00000561436 METTL3Q86U44 580 aaKnown RBP8.16□□□□□ -1.1
HERC1-215ENST00000561436 RBM46Q8TBY0 533 aaKnown RBP8.16□□□□□ -1.1
HERC1-215ENST00000561436 PXYLP1Q8TE99 480 aa8.16□□□□□ -1.1
HERC1-215ENST00000561436 CCDC102AQ96A19 550 aa8.14□□□□□ -1.11
HERC1-215ENST00000561436 HCSTQ9UBK5 93 aa8.14□□□□□ -1.11
HERC1-215ENST00000561436 MAP2K5Q13163 448 aa8.13□□□□□ -1.11
HERC1-215ENST00000561436 TPRNQ4KMQ1 711 aa8.13□□□□□ -1.11
HERC1-215ENST00000561436 DNAJB2P25686 324 aa8.12□□□□□ -1.11
HERC1-215ENST00000561436 KRI1Q8N9T8 703 aaKnown RBP8.12□□□□□ -1.11
HERC1-215ENST00000561436 TMEM134Q9H6X4 195 aa8.12□□□□□ -1.11
HERC1-215ENST00000561436 IRF6O14896 467 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms