RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 TSPY4P0CV99 314 aa13.7□□□□□ -0.22
RTF1-206ENST00000560447 TSPY10P0CW01 314 aa13.7□□□□□ -0.22
RTF1-206ENST00000560447 ARHGEF12Q9NZN5 1544 aa13.69□□□□□ -0.22
RTF1-206ENST00000560447 GTF3C3Q9Y5Q9 886 aa13.69□□□□□ -0.22
RTF1-206ENST00000560447 UNC13BO14795 1591 aa13.69□□□□□ -0.22
RTF1-206ENST00000560447 ERCC6L2Q5T890 1561 aa13.67□□□□□ -0.22
RTF1-206ENST00000560447 ARHGAP5Q13017 1502 aa13.67□□□□□ -0.22
RTF1-206ENST00000560447 EIF4G2P78344 907 aaKnown RBP eCLIP13.66□□□□□ -0.22
RTF1-206ENST00000560447 YTHDC1Q96MU7 727 aaKnown RBP13.66□□□□□ -0.22
RTF1-206ENST00000560447 ZNF777Q9ULD5 760 aaPredicted RBP13.66□□□□□ -0.22
RTF1-206ENST00000560447 KIF15Q9NS87 1388 aa13.66□□□□□ -0.22
RTF1-206ENST00000560447 DDX10Q13206 875 aaKnown RBP13.65□□□□□ -0.22
RTF1-206ENST00000560447 L3MBTL2Q969R5 705 aa13.65□□□□□ -0.22
RTF1-206ENST00000560447 SYCP2Q9BX26 1530 aa13.64□□□□□ -0.23
RTF1-206ENST00000560447 PITPNM1O00562 1244 aa13.64□□□□□ -0.23
RTF1-206ENST00000560447 ANP32CO43423 234 aa13.64□□□□□ -0.23
RTF1-206ENST00000560447 PLCH2O75038 1416 aa13.64□□□□□ -0.23
RTF1-206ENST00000560447 UHRF1BP1Q6BDS2 1440 aa13.64□□□□□ -0.23
RTF1-206ENST00000560447 SSUH2Q9Y2M2 353 aa13.63□□□□□ -0.23
RTF1-206ENST00000560447 IQGAP3Q86VI3 1631 aa13.63□□□□□ -0.23
RTF1-206ENST00000560447 DUOX2Q9NRD8 1548 aa13.63□□□□□ -0.23
RTF1-206ENST00000560447 MAGI2Q86UL8 1455 aa13.61□□□□□ -0.23
RTF1-206ENST00000560447 ABCC1P33527 1531 aa13.61□□□□□ -0.23
RTF1-206ENST00000560447 NUP155O75694 1391 aa13.6□□□□□ -0.23
RTF1-206ENST00000560447 FAM135AQ9P2D6 1515 aa13.6□□□□□ -0.23
RTF1-206ENST00000560447 SPATA31E1Q6ZUB1 1445 aa13.6□□□□□ -0.23
RTF1-206ENST00000560447 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
RTF1-206ENST00000560447 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
RTF1-206ENST00000560447 HSPA5P11021 654 aaKnown RBP13.59□□□□□ -0.23
RTF1-206ENST00000560447 ARID4BQ4LE39 1312 aaPredicted RBP13.59□□□□□ -0.23
RTF1-206ENST00000560447 RTEL1-TNFRSF6BF6WH68 1400 aa13.58□□□□□ -0.24
RTF1-206ENST00000560447 CNTLNQ9NXG0 1405 aa13.58□□□□□ -0.24
RTF1-206ENST00000560447 PKD2Q13563 968 aa13.58□□□□□ -0.24
RTF1-206ENST00000560447 RALGAPBQ86X10 1494 aa13.58□□□□□ -0.24
RTF1-206ENST00000560447 ABCA9Q8IUA7 1624 aa13.57□□□□□ -0.24
RTF1-206ENST00000560447 ATP10AO60312 1499 aa13.57□□□□□ -0.24
RTF1-206ENST00000560447 HNRNPMP52272 730 aaKnown RBP eCLIP13.57□□□□□ -0.24
RTF1-206ENST00000560447 ZNF692Q9BU19 519 aaPredicted RBP13.57□□□□□ -0.24
RTF1-206ENST00000560447 EFCAB2Q5VUJ9 269 aa13.56□□□□□ -0.24
RTF1-206ENST00000560447 WDR7Q9Y4E6 1490 aa13.55□□□□□ -0.24
RTF1-206ENST00000560447 KDM5CP41229 1560 aa13.55□□□□□ -0.24
RTF1-206ENST00000560447 LAMC1P11047 1609 aa13.55□□□□□ -0.24
RTF1-206ENST00000560447 PIP4P2Q8N4L2 257 aa13.55□□□□□ -0.24
RTF1-206ENST00000560447 CCDC7Q96M83 1385 aa13.55□□□□□ -0.24
RTF1-206ENST00000560447 WASHC2AQ641Q2 1341 aa13.54□□□□□ -0.24
RTF1-206ENST00000560447 FXR2P51116 673 aaKnown RBP eCLIP13.53□□□□□ -0.24
RTF1-206ENST00000560447 NBPF8Q3BBV2 869 aa13.53□□□□□ -0.24
RTF1-206ENST00000560447 DEPDC5O75140 1603 aa13.52□□□□□ -0.25
RTF1-206ENST00000560447 EIF2AK4Q9P2K8 1649 aaKnown RBP13.52□□□□□ -0.25
RTF1-206ENST00000560447 CFAP74Q9C0B2 1584 aa13.5□□□□□ -0.25
RTF1-206ENST00000560447 HIRIP3Q9BW71 556 aaPredicted RBP13.5□□□□□ -0.25
RTF1-206ENST00000560447 INO80Q9ULG1 1556 aaPredicted RBP13.49□□□□□ -0.25
RTF1-206ENST00000560447 ZFYVE16Q7Z3T8 1539 aa13.49□□□□□ -0.25
RTF1-206ENST00000560447 ROCK2O75116 1388 aaKnown RBP13.49□□□□□ -0.25
RTF1-206ENST00000560447 TRPM1Q7Z4N2 1603 aa13.49□□□□□ -0.25
RTF1-206ENST00000560447 CCDC144AA2RUR9 1427 aa13.48□□□□□ -0.25
RTF1-206ENST00000560447 NEURL4Q96JN8 1562 aa13.48□□□□□ -0.25
RTF1-206ENST00000560447 USP47Q96K76 1375 aa13.47□□□□□ -0.25
RTF1-206ENST00000560447 TET3O43151 1660 aa13.46□□□□□ -0.26
RTF1-206ENST00000560447 BCORL1Q5H9F3 1711 aa13.45□□□□□ -0.26
RTF1-206ENST00000560447 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
RTF1-206ENST00000560447 ATP7AQ04656 1500 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 STAC3Q96MF2 364 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 TRAPPC8Q9Y2L5 1435 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 VWDEQ8N2E2 1590 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 CEP152O94986 1710 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 GPRASP1Q5JY77 1395 aa13.44□□□□□ -0.26
RTF1-206ENST00000560447 KIF7Q2M1P5 1343 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 FANCAO15360 1455 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 PLA2R1Q13018 1463 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 SPHKAPQ2M3C7 1700 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 PRAG1Q86YV5 1406 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 KCNH8Q96L42 1107 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 TRPM2O94759 1503 aa13.43□□□□□ -0.26
RTF1-206ENST00000560447 E9PCH4 1651 aa13.42□□□□□ -0.26
RTF1-206ENST00000560447 RNF17Q9BXT8 1623 aaKnown RBP13.42□□□□□ -0.26
RTF1-206ENST00000560447 SPAG9O60271 1321 aaKnown RBP13.41□□□□□ -0.26
RTF1-206ENST00000560447 KTN1Q86UP2 1357 aaKnown RBP13.41□□□□□ -0.26
RTF1-206ENST00000560447 ASXL2Q76L83 1435 aa13.4□□□□□ -0.26
RTF1-206ENST00000560447 PRDM15P57071 1507 aaPredicted RBP13.4□□□□□ -0.26
RTF1-206ENST00000560447 PRKRIP1Q9H875 184 aaPredicted RBP13.4□□□□□ -0.26
RTF1-206ENST00000560447 ADGRL1O94910 1474 aa13.39□□□□□ -0.27
RTF1-206ENST00000560447 A2MP01023 1474 aa13.39□□□□□ -0.27
RTF1-206ENST00000560447 PTPRTO14522 1441 aa13.39□□□□□ -0.27
RTF1-206ENST00000560447 C11orf95C9JLR9 678 aaPredicted RBP13.38□□□□□ -0.27
RTF1-206ENST00000560447 KIAA1210Q9ULL0 1709 aa13.38□□□□□ -0.27
RTF1-206ENST00000560447 KANK1Q14678 1352 aa13.37□□□□□ -0.27
RTF1-206ENST00000560447 CARD11Q9BXL7 1154 aa13.37□□□□□ -0.27
RTF1-206ENST00000560447 ZNF518AQ6AHZ1 1483 aa13.36□□□□□ -0.27
RTF1-206ENST00000560447 LMTK2Q8IWU2 1503 aa13.36□□□□□ -0.27
RTF1-206ENST00000560447 KIDINS220Q9ULH0 1771 aa13.35□□□□□ -0.27
RTF1-206ENST00000560447 DHX29Q7Z478 1369 aaKnown RBP13.35□□□□□ -0.27
RTF1-206ENST00000560447 DCAF11Q8TEB1 546 aa13.35□□□□□ -0.27
RTF1-206ENST00000560447 CLEC11AQ9Y240 323 aa13.35□□□□□ -0.27
RTF1-206ENST00000560447 SUPT16HQ9Y5B9 1047 aaKnown RBP13.35□□□□□ -0.27
RTF1-206ENST00000560447 MROH1Q8NDA8 1641 aa13.35□□□□□ -0.27
RTF1-206ENST00000560447 SCAPERQ9BY12 1400 aa13.34□□□□□ -0.27
RTF1-206ENST00000560447 MADDQ8WXG6 1647 aa13.34□□□□□ -0.27
RTF1-206ENST00000560447 NPM1P06748 294 aaKnown RBP eCLIP13.33□□□□□ -0.28
RTF1-206ENST00000560447 IQGAP1P46940 1657 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms