RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ABCA6Q8N139 1617 aa16.4■□□□□ 0.22
USP3-218ENST00000560202 YEATS2Q9ULM3 1422 aa16.4■□□□□ 0.22
USP3-218ENST00000560202 PELP1Q8IZL8 1130 aaKnown RBP16.4■□□□□ 0.22
USP3-218ENST00000560202 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
USP3-218ENST00000560202 KIF3BO15066 747 aa16.39■□□□□ 0.21
USP3-218ENST00000560202 DIP2CQ9Y2E4 1556 aa16.38■□□□□ 0.21
USP3-218ENST00000560202 EIF2AK4Q9P2K8 1649 aaKnown RBP16.38■□□□□ 0.21
USP3-218ENST00000560202 PKD2Q13563 968 aa16.37■□□□□ 0.21
USP3-218ENST00000560202 FOXD1Q16676 465 aa16.37■□□□□ 0.21
USP3-218ENST00000560202 SIN3AQ96ST3 1273 aa16.36■□□□□ 0.21
USP3-218ENST00000560202 FAM135AQ9P2D6 1515 aa16.36■□□□□ 0.21
USP3-218ENST00000560202 DEPDC5O75140 1603 aa16.34■□□□□ 0.21
USP3-218ENST00000560202 ATP10AO60312 1499 aa16.34■□□□□ 0.21
USP3-218ENST00000560202 NEUROD1Q13562 356 aa16.34■□□□□ 0.21
USP3-218ENST00000560202 IQGAP3Q86VI3 1631 aa16.33■□□□□ 0.21
USP3-218ENST00000560202 KANK1Q14678 1352 aa16.33■□□□□ 0.2
USP3-218ENST00000560202 ANKRD30BQ9BXX2 1392 aa16.33■□□□□ 0.2
USP3-218ENST00000560202 PRDM15P57071 1507 aaPredicted RBP16.3■□□□□ 0.2
USP3-218ENST00000560202 BCORL1Q5H9F3 1711 aa16.3■□□□□ 0.2
USP3-218ENST00000560202 MROH1Q8NDA8 1641 aa16.3■□□□□ 0.2
USP3-218ENST00000560202 RNF17Q9BXT8 1623 aaKnown RBP16.29■□□□□ 0.2
USP3-218ENST00000560202 VWDEQ8N2E2 1590 aa16.29■□□□□ 0.2
USP3-218ENST00000560202 REREQ9P2R6 1566 aa16.29■□□□□ 0.2
USP3-218ENST00000560202 GGT6Q6P531 493 aa16.29■□□□□ 0.2
USP3-218ENST00000560202 ARHGEF40Q8TER5 1519 aa16.29■□□□□ 0.2
USP3-218ENST00000560202 TIMELESSQ9UNS1 1208 aa16.27■□□□□ 0.2
USP3-218ENST00000560202 AGLP35573 1532 aa16.25■□□□□ 0.19
USP3-218ENST00000560202 LMTK2Q8IWU2 1503 aa16.24■□□□□ 0.19
USP3-218ENST00000560202 TET3O43151 1660 aa16.23■□□□□ 0.19
USP3-218ENST00000560202 TONSLQ96HA7 1378 aa16.23■□□□□ 0.19
USP3-218ENST00000560202 RPRD2Q5VT52 1461 aaKnown RBP16.23■□□□□ 0.19
USP3-218ENST00000560202 WASHC2CQ9Y4E1 1318 aa16.22■□□□□ 0.19
USP3-218ENST00000560202 PLA2R1Q13018 1463 aa16.21■□□□□ 0.18
USP3-218ENST00000560202 ABCC3O15438 1527 aa16.2■□□□□ 0.18
USP3-218ENST00000560202 SENP3Q9H4L4 574 aaPredicted RBP16.2■□□□□ 0.18
USP3-218ENST00000560202 E9PCH4 1651 aa16.19■□□□□ 0.18
USP3-218ENST00000560202 SIGLEC1Q9BZZ2 1709 aa16.19■□□□□ 0.18
USP3-218ENST00000560202 EFCAB6Q5THR3 1501 aa16.19■□□□□ 0.18
USP3-218ENST00000560202 PPP6R1Q9UPN7 881 aa16.18■□□□□ 0.18
USP3-218ENST00000560202 CEP152O94986 1710 aa16.18■□□□□ 0.18
USP3-218ENST00000560202 CCDC144AA2RUR9 1427 aa16.18■□□□□ 0.18
USP3-218ENST00000560202 PTPRTO14522 1441 aa16.17■□□□□ 0.18
USP3-218ENST00000560202 PPP1R15AO75807 674 aaPredicted RBP16.16■□□□□ 0.18
USP3-218ENST00000560202 ARID4BQ4LE39 1312 aaPredicted RBP16.16■□□□□ 0.18
USP3-218ENST00000560202 ZC3H13Q5T200 1668 aaKnown RBP16.15■□□□□ 0.18
USP3-218ENST00000560202 MLECQ14165 292 aa16.15■□□□□ 0.18
USP3-218ENST00000560202 NPATQ14207 1427 aa16.15■□□□□ 0.18
USP3-218ENST00000560202 L3MBTL2Q969R5 705 aa16.14■□□□□ 0.18
USP3-218ENST00000560202 TRPM2O94759 1503 aa16.14■□□□□ 0.17
USP3-218ENST00000560202 ARHGAP31Q2M1Z3 1444 aa16.13■□□□□ 0.17
USP3-218ENST00000560202 CAMSAP1Q5T5Y3 1602 aa16.13■□□□□ 0.17
USP3-218ENST00000560202 SPHKAPQ2M3C7 1700 aa16.11■□□□□ 0.17
USP3-218ENST00000560202 ESF1Q9H501 851 aaKnown RBP16.08■□□□□ 0.17
USP3-218ENST00000560202 NOS1P29475 1434 aa16.08■□□□□ 0.16
USP3-218ENST00000560202 CNTLNQ9NXG0 1405 aa16.08■□□□□ 0.16
USP3-218ENST00000560202 CLTCL1P53675 1640 aa16.07■□□□□ 0.16
USP3-218ENST00000560202 CLTCQ00610 1675 aaKnown RBP16.06■□□□□ 0.16
USP3-218ENST00000560202 RGL3Q3MIN7 710 aa16.06■□□□□ 0.16
USP3-218ENST00000560202 SPATA31E1Q6ZUB1 1445 aa16.05■□□□□ 0.16
USP3-218ENST00000560202 UGGT1Q9NYU2 1555 aa16.05■□□□□ 0.16
USP3-218ENST00000560202 ZMYM3Q14202 1370 aa16.04■□□□□ 0.16
USP3-218ENST00000560202 FBXO31Q5XUX0 539 aaPredicted RBP16.03■□□□□ 0.16
USP3-218ENST00000560202 DCAF11Q8TEB1 546 aa16.03■□□□□ 0.16
USP3-218ENST00000560202 NBPF8Q3BBV2 869 aa16.02■□□□□ 0.15
USP3-218ENST00000560202 ERVK-7P63135 1459 aa16.02■□□□□ 0.15
USP3-218ENST00000560202 SYNMO15061 1565 aa16.02■□□□□ 0.15
USP3-218ENST00000560202 PREX1Q8TCU6 1659 aa16.01■□□□□ 0.15
USP3-218ENST00000560202 SLC52A1Q9NWF4 448 aa16.01■□□□□ 0.15
USP3-218ENST00000560202 KDM2AQ9Y2K7 1162 aa16.01■□□□□ 0.15
USP3-218ENST00000560202 NEURL4Q96JN8 1562 aa16■□□□□ 0.15
USP3-218ENST00000560202 PHF23Q9BUL5 403 aaPredicted RBP15.99■□□□□ 0.15
USP3-218ENST00000560202 CFAP65Q6ZU64 1925 aaKnown RBP15.99■□□□□ 0.15
USP3-218ENST00000560202 UHRF1BP1Q6BDS2 1440 aa15.99■□□□□ 0.15
USP3-218ENST00000560202 IDI1Q13907 227 aa15.99■□□□□ 0.15
USP3-218ENST00000560202 ZNF326Q5BKZ1 582 aaKnown RBP15.99■□□□□ 0.15
USP3-218ENST00000560202 PIK3C2BO00750 1634 aa15.98■□□□□ 0.15
USP3-218ENST00000560202 SPATA31D1Q6ZQQ2 1576 aa15.98■□□□□ 0.15
USP3-218ENST00000560202 CHGAP10645 457 aaKnown RBP15.98■□□□□ 0.15
USP3-218ENST00000560202 ZNF316A6NFI3 1004 aaPredicted RBP15.97■□□□□ 0.15
USP3-218ENST00000560202 MROH2AA6NES4 1674 aa15.96■□□□□ 0.15
USP3-218ENST00000560202 STAC3Q96MF2 364 aa15.96■□□□□ 0.15
USP3-218ENST00000560202 ADGRB3O60242 1522 aa15.96■□□□□ 0.15
USP3-218ENST00000560202 KIF1BO60333 1816 aa15.96■□□□□ 0.15
USP3-218ENST00000560202 PRAG1Q86YV5 1406 aa15.94■□□□□ 0.14
USP3-218ENST00000560202 FER1L4A9Z1Z3 1794 aa15.93■□□□□ 0.14
USP3-218ENST00000560202 CEBPAP49715 358 aaPredicted RBP15.92■□□□□ 0.14
USP3-218ENST00000560202 MYT1Q01538 1121 aa15.92■□□□□ 0.14
USP3-218ENST00000560202 RPGRIP1LQ68CZ1 1315 aa15.92■□□□□ 0.14
USP3-218ENST00000560202 TNRQ92752 1358 aa15.92■□□□□ 0.14
USP3-218ENST00000560202 RALGAPBQ86X10 1494 aa15.9■□□□□ 0.14
USP3-218ENST00000560202 MADDQ8WXG6 1647 aa15.9■□□□□ 0.14
USP3-218ENST00000560202 STAG3Q9UJ98 1225 aa15.89■□□□□ 0.13
USP3-218ENST00000560202 MYOM2P54296 1465 aa15.89■□□□□ 0.13
USP3-218ENST00000560202 C3P01024 1663 aa15.89■□□□□ 0.13
USP3-218ENST00000560202 ADAMTSL3P82987 1691 aa15.89■□□□□ 0.13
USP3-218ENST00000560202 TMEM131LA2VDJ0 1609 aa15.89■□□□□ 0.13
USP3-218ENST00000560202 ADGRF5Q8IZF2 1346 aa15.87■□□□□ 0.13
USP3-218ENST00000560202 EIF4G2P78344 907 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP3-218ENST00000560202 PLPPR3Q6T4P5 718 aa15.87■□□□□ 0.13
USP3-218ENST00000560202 IFT172Q9UG01 1749 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms