RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 CDC42BPAQ5VT25 1732 aa16.04■□□□□ 0.16
SMAD3-211ENST00000559460 INO80Q9ULG1 1556 aaPredicted RBP16.04■□□□□ 0.16
SMAD3-211ENST00000559460 LRRC7Q96NW7 1537 aa16.04■□□□□ 0.16
SMAD3-211ENST00000559460 PLEKHH2Q8IVE3 1493 aa16.03■□□□□ 0.16
SMAD3-211ENST00000559460 ARHGAP35Q9NRY4 1499 aa16.03■□□□□ 0.16
SMAD3-211ENST00000559460 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
SMAD3-211ENST00000559460 MED14O60244 1454 aa16.03■□□□□ 0.16
SMAD3-211ENST00000559460 DEPDC5O75140 1603 aa16.02■□□□□ 0.16
SMAD3-211ENST00000559460 UGGT1Q9NYU2 1555 aa16.02■□□□□ 0.16
SMAD3-211ENST00000559460 IQGAP1P46940 1657 aa16.02■□□□□ 0.15
SMAD3-211ENST00000559460 FBXO31Q5XUX0 539 aaPredicted RBP16.01■□□□□ 0.15
SMAD3-211ENST00000559460 NLRP1Q9C000 1473 aa16.01■□□□□ 0.15
SMAD3-211ENST00000559460 ADGBQ8N7X0 1667 aa16.01■□□□□ 0.15
SMAD3-211ENST00000559460 LRRIQ1Q96JM4 1722 aa15.99■□□□□ 0.15
SMAD3-211ENST00000559460 PZPP20742 1482 aa15.99■□□□□ 0.15
SMAD3-211ENST00000559460 CFDP1Q9UEE9 299 aaPredicted RBP15.99■□□□□ 0.15
SMAD3-211ENST00000559460 KIAA1107Q9UPP5 1409 aa15.99■□□□□ 0.15
SMAD3-211ENST00000559460 KDM5DQ9BY66 1539 aa15.98■□□□□ 0.15
SMAD3-211ENST00000559460 SETD1AO15047 1707 aaKnown RBP15.97■□□□□ 0.15
SMAD3-211ENST00000559460 WASHC2CQ9Y4E1 1318 aa15.96■□□□□ 0.15
SMAD3-211ENST00000559460 MIA2Q96PC5 1412 aa15.96■□□□□ 0.15
SMAD3-211ENST00000559460 GPATCH8Q9UKJ3 1502 aaKnown RBP15.94■□□□□ 0.14
SMAD3-211ENST00000559460 KIF3BO15066 747 aa15.94■□□□□ 0.14
SMAD3-211ENST00000559460 CCNB3Q8WWL7 1395 aa15.93■□□□□ 0.14
SMAD3-211ENST00000559460 FAM135BQ49AJ0 1406 aa15.93■□□□□ 0.14
SMAD3-211ENST00000559460 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
SMAD3-211ENST00000559460 STRCP1A6NGW2 1772 aa15.92■□□□□ 0.14
SMAD3-211ENST00000559460 DHX29Q7Z478 1369 aaKnown RBP15.91■□□□□ 0.14
SMAD3-211ENST00000559460 CHIC1Q5VXU3 224 aa15.9■□□□□ 0.14
SMAD3-211ENST00000559460 UPF1Q92900 1129 aaKnown RBP eCLIP15.89■□□□□ 0.13
SMAD3-211ENST00000559460 RTEL1-TNFRSF6BF6WH68 1400 aa15.88■□□□□ 0.13
SMAD3-211ENST00000559460 MEX3CQ5U5Q3 659 aaKnown RBP15.86■□□□□ 0.13
SMAD3-211ENST00000559460 TRIM52Q96A61 297 aa15.86■□□□□ 0.13
SMAD3-211ENST00000559460 SCAF11Q99590 1463 aaKnown RBP15.85■□□□□ 0.13
SMAD3-211ENST00000559460 FYCO1Q9BQS8 1478 aa15.85■□□□□ 0.13
SMAD3-211ENST00000559460 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
SMAD3-211ENST00000559460 ROBO1Q9Y6N7 1651 aa15.84■□□□□ 0.13
SMAD3-211ENST00000559460 ZNF772Q68DY9 489 aaPredicted RBP15.84■□□□□ 0.13
SMAD3-211ENST00000559460 ZC3H13Q5T200 1668 aaKnown RBP15.83■□□□□ 0.13
SMAD3-211ENST00000559460 EID1Q9Y6B2 187 aa15.83■□□□□ 0.12
SMAD3-211ENST00000559460 JCADQ9P266 1359 aa15.83■□□□□ 0.12
SMAD3-211ENST00000559460 MTUS2Q5JR59 1369 aa15.81■□□□□ 0.12
SMAD3-211ENST00000559460 TXNDC2Q86VQ3 553 aa15.81■□□□□ 0.12
SMAD3-211ENST00000559460 TMEM94Q12767 1356 aa15.8■□□□□ 0.12
SMAD3-211ENST00000559460 ZNF644Q9H582 1327 aaPredicted RBP15.79■□□□□ 0.12
SMAD3-211ENST00000559460 XIRP1Q702N8 1843 aaKnown RBP15.78■□□□□ 0.12
SMAD3-211ENST00000559460 CCDC141Q6ZP82 1450 aa15.78■□□□□ 0.12
SMAD3-211ENST00000559460 MBD5Q9P267 1494 aa15.78■□□□□ 0.12
SMAD3-211ENST00000559460 PHLPP1O60346 1717 aa15.77■□□□□ 0.12
SMAD3-211ENST00000559460 PROSER2Q86WR7 435 aaPredicted RBP15.77■□□□□ 0.12
SMAD3-211ENST00000559460 ERVK-7P63135 1459 aa15.77■□□□□ 0.11
SMAD3-211ENST00000559460 MSH6P52701 1360 aa15.76■□□□□ 0.11
SMAD3-211ENST00000559460 RXRBP28702 533 aa15.76■□□□□ 0.11
SMAD3-211ENST00000559460 FOXD1Q16676 465 aa15.76■□□□□ 0.11
SMAD3-211ENST00000559460 SPATA31A6Q5VVP1 1343 aa15.75■□□□□ 0.11
SMAD3-211ENST00000559460 UBR1Q8IWV7 1749 aa15.75■□□□□ 0.11
SMAD3-211ENST00000559460 LTKP29376 864 aa15.75■□□□□ 0.11
SMAD3-211ENST00000559460 STAG3Q9UJ98 1225 aa15.75■□□□□ 0.11
SMAD3-211ENST00000559460 RSPH4AQ5TD94 716 aa15.74■□□□□ 0.11
SMAD3-211ENST00000559460 SLIT1O75093 1534 aa15.73■□□□□ 0.11
SMAD3-211ENST00000559460 TIAM1Q13009 1591 aa15.73■□□□□ 0.11
SMAD3-211ENST00000559460 ABCC3O15438 1527 aa15.73■□□□□ 0.11
SMAD3-211ENST00000559460 TSPY4P0CV99 314 aa15.72■□□□□ 0.11
SMAD3-211ENST00000559460 TSPY10P0CW01 314 aa15.72■□□□□ 0.11
SMAD3-211ENST00000559460 KCNA6P17658 529 aa15.72■□□□□ 0.11
SMAD3-211ENST00000559460 ARHGAP23Q9P227 1491 aa15.71■□□□□ 0.11
SMAD3-211ENST00000559460 SLAIN2Q9P270 581 aa15.71■□□□□ 0.11
SMAD3-211ENST00000559460 MAP3K1Q13233 1512 aa15.7■□□□□ 0.1
SMAD3-211ENST00000559460 RBM33Q96EV2 1170 aaKnown RBP15.7■□□□□ 0.1
SMAD3-211ENST00000559460 NCOA2Q15596 1464 aa15.7■□□□□ 0.1
SMAD3-211ENST00000559460 FGD6Q6ZV73 1430 aa15.69■□□□□ 0.1
SMAD3-211ENST00000559460 CDK12Q9NYV4 1490 aaPredicted RBP15.69■□□□□ 0.1
SMAD3-211ENST00000559460 PRDM15P57071 1507 aaPredicted RBP15.68■□□□□ 0.1
SMAD3-211ENST00000559460 LRP6O75581 1613 aa15.68■□□□□ 0.1
SMAD3-211ENST00000559460 NKTRP30414 1462 aaKnown RBP15.68■□□□□ 0.1
SMAD3-211ENST00000559460 BCANQ96GW7 911 aa15.68■□□□□ 0.1
SMAD3-211ENST00000559460 EHBP1L1Q8N3D4 1523 aa15.68■□□□□ 0.1
SMAD3-211ENST00000559460 CAMSAP2Q08AD1 1489 aa15.67■□□□□ 0.1
SMAD3-211ENST00000559460 TMEM2Q9UHN6 1383 aa15.66■□□□□ 0.1
SMAD3-211ENST00000559460 SLC26A8Q96RN1 970 aa15.66■□□□□ 0.1
SMAD3-211ENST00000559460 COL16A1Q07092 1604 aaPredicted RBP15.65■□□□□ 0.1
SMAD3-211ENST00000559460 NUTM2BA6NNL0 878 aaPredicted RBP15.64■□□□□ 0.09
SMAD3-211ENST00000559460 NUTM2EB1AL46 878 aaPredicted RBP15.64■□□□□ 0.09
SMAD3-211ENST00000559460 NUTM2DQ5VT03 806 aaPredicted RBP15.64■□□□□ 0.09
SMAD3-211ENST00000559460 C14orf37Q86TY3 774 aa15.64■□□□□ 0.09
SMAD3-211ENST00000559460 NUTM2AQ8IVF1 878 aaPredicted RBP15.64■□□□□ 0.09
SMAD3-211ENST00000559460 ZRANB1Q9UGI0 708 aa15.64■□□□□ 0.09
SMAD3-211ENST00000559460 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
SMAD3-211ENST00000559460 EIF2AK4Q9P2K8 1649 aaKnown RBP15.63■□□□□ 0.09
SMAD3-211ENST00000559460 CEP152O94986 1710 aa15.63■□□□□ 0.09
SMAD3-211ENST00000559460 CFAP65Q6ZU64 1925 aaKnown RBP15.6■□□□□ 0.09
SMAD3-211ENST00000559460 EFCAB6Q5THR3 1501 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 ARHGEF5Q12774 1597 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 NWD1Q149M9 1564 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 AFF2P51816 1311 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 PIK3C2BO00750 1634 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 SHPRHQ149N8 1683 aa15.6■□□□□ 0.09
SMAD3-211ENST00000559460 ARHGAP31Q2M1Z3 1444 aa15.58■□□□□ 0.08
SMAD3-211ENST00000559460 RBM6P78332 1123 aaKnown RBP15.57■□□□□ 0.08
SMAD3-211ENST00000559460 ATAD2Q6PL18 1390 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms