RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 PLCB2Q00722 1185 aa14.87□□□□□ -0.03
SPG11-214ENST00000558989 DNMT1P26358 1616 aaKnown RBP14.87□□□□□ -0.03
SPG11-214ENST00000558989 ABCC5O15440 1437 aa14.86□□□□□ -0.03
SPG11-214ENST00000558989 MAST1Q9Y2H9 1570 aa14.86□□□□□ -0.03
SPG11-214ENST00000558989 HSPA2P54652 639 aa14.86□□□□□ -0.03
SPG11-214ENST00000558989 RRP7BPQ9NSQ0 103 aa14.85□□□□□ -0.03
SPG11-214ENST00000558989 DAPK1P53355 1430 aa14.85□□□□□ -0.03
SPG11-214ENST00000558989 TCOF1Q13428 1488 aaKnown RBP14.85□□□□□ -0.03
SPG11-214ENST00000558989 CFAP65Q6ZU64 1925 aaKnown RBP14.85□□□□□ -0.03
SPG11-214ENST00000558989 ITGAEP38570 1179 aa14.84□□□□□ -0.03
SPG11-214ENST00000558989 SETD1BQ9UPS6 1966 aaKnown RBP14.83□□□□□ -0.03
SPG11-214ENST00000558989 LMTK3Q96Q04 1460 aa14.83□□□□□ -0.04
SPG11-214ENST00000558989 PREX1Q8TCU6 1659 aa14.83□□□□□ -0.04
SPG11-214ENST00000558989 MROH2AA6NES4 1674 aa14.82□□□□□ -0.04
SPG11-214ENST00000558989 ZMYM3Q14202 1370 aa14.81□□□□□ -0.04
SPG11-214ENST00000558989 CNTLNQ9NXG0 1405 aa14.81□□□□□ -0.04
SPG11-214ENST00000558989 KIF15Q9NS87 1388 aa14.8□□□□□ -0.04
SPG11-214ENST00000558989 SHANK2Q9UPX8 1470 aa14.79□□□□□ -0.04
SPG11-214ENST00000558989 CEP152O94986 1710 aa14.79□□□□□ -0.04
SPG11-214ENST00000558989 DUOX2Q9NRD8 1548 aa14.78□□□□□ -0.04
SPG11-214ENST00000558989 WASHC2CQ9Y4E1 1318 aa14.78□□□□□ -0.04
SPG11-214ENST00000558989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.78□□□□□ -0.04
SPG11-214ENST00000558989 TIMELESSQ9UNS1 1208 aa14.78□□□□□ -0.04
SPG11-214ENST00000558989 EIF2AK4Q9P2K8 1649 aaKnown RBP14.77□□□□□ -0.05
SPG11-214ENST00000558989 UHRF1BP1Q6BDS2 1440 aa14.76□□□□□ -0.05
SPG11-214ENST00000558989 ANKRD30AQ9BXX3 1397 aa14.76□□□□□ -0.05
SPG11-214ENST00000558989 KDM5DQ9BY66 1539 aa14.75□□□□□ -0.05
SPG11-214ENST00000558989 RNF17Q9BXT8 1623 aaKnown RBP14.75□□□□□ -0.05
SPG11-214ENST00000558989 FBXO31Q5XUX0 539 aaPredicted RBP14.74□□□□□ -0.05
SPG11-214ENST00000558989 PTPRKQ15262 1439 aa14.74□□□□□ -0.05
SPG11-214ENST00000558989 MROH1Q8NDA8 1641 aa14.73□□□□□ -0.05
SPG11-214ENST00000558989 NCOA1Q15788 1441 aa14.73□□□□□ -0.05
SPG11-214ENST00000558989 PPP6R1Q9UPN7 881 aa14.72□□□□□ -0.05
SPG11-214ENST00000558989 MYO3AQ8NEV4 1616 aa14.72□□□□□ -0.05
SPG11-214ENST00000558989 ERBINQ96RT1 1412 aa14.71□□□□□ -0.05
SPG11-214ENST00000558989 ABCC3O15438 1527 aa14.71□□□□□ -0.05
SPG11-214ENST00000558989 CAMSAP1Q5T5Y3 1602 aa14.7□□□□□ -0.06
SPG11-214ENST00000558989 ZC3H13Q5T200 1668 aaKnown RBP14.7□□□□□ -0.06
SPG11-214ENST00000558989 ADGRL2O95490 1459 aa14.69□□□□□ -0.06
SPG11-214ENST00000558989 NPATQ14207 1427 aa14.69□□□□□ -0.06
SPG11-214ENST00000558989 STRCQ7RTU9 1775 aa14.69□□□□□ -0.06
SPG11-214ENST00000558989 PPP4R3CPQ6ZMV5 832 aa14.68□□□□□ -0.06
SPG11-214ENST00000558989 PZPP20742 1482 aa14.67□□□□□ -0.06
SPG11-214ENST00000558989 DEPDC5O75140 1603 aa14.67□□□□□ -0.06
SPG11-214ENST00000558989 PRDM15P57071 1507 aaPredicted RBP14.67□□□□□ -0.06
SPG11-214ENST00000558989 CEP170BQ9Y4F5 1589 aaPredicted RBP14.66□□□□□ -0.06
SPG11-214ENST00000558989 ANKRD50Q9ULJ7 1429 aa14.66□□□□□ -0.06
SPG11-214ENST00000558989 TPRNQ4KMQ1 711 aa14.66□□□□□ -0.06
SPG11-214ENST00000558989 TNRQ92752 1358 aa14.66□□□□□ -0.06
SPG11-214ENST00000558989 KANK1Q14678 1352 aa14.65□□□□□ -0.06
SPG11-214ENST00000558989 ZNF142P52746 1687 aaPredicted RBP14.65□□□□□ -0.06
SPG11-214ENST00000558989 FAM135AQ9P2D6 1515 aa14.65□□□□□ -0.06
SPG11-214ENST00000558989 RRBP1Q9P2E9 1410 aaKnown RBP14.64□□□□□ -0.07
SPG11-214ENST00000558989 NCKAP5LQ9HCH0 1330 aa14.62□□□□□ -0.07
SPG11-214ENST00000558989 ERVK-7P63135 1459 aa14.61□□□□□ -0.07
SPG11-214ENST00000558989 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.61□□□□□ -0.07
SPG11-214ENST00000558989 A2ML1A8K2U0 1454 aa14.6□□□□□ -0.07
SPG11-214ENST00000558989 ROCK1Q13464 1354 aa14.6□□□□□ -0.07
SPG11-214ENST00000558989 TULP1O00294 542 aaPredicted RBP14.6□□□□□ -0.07
SPG11-214ENST00000558989 NPM3O75607 178 aaKnown RBP14.6□□□□□ -0.07
SPG11-214ENST00000558989 HAP1P54257 671 aaPredicted RBP14.59□□□□□ -0.07
SPG11-214ENST00000558989 SPATA31D1Q6ZQQ2 1576 aa14.59□□□□□ -0.07
SPG11-214ENST00000558989 VWDEQ8N2E2 1590 aa14.58□□□□□ -0.08
SPG11-214ENST00000558989 UNC13BO14795 1591 aa14.57□□□□□ -0.08
SPG11-214ENST00000558989 UGGT1Q9NYU2 1555 aa14.57□□□□□ -0.08
SPG11-214ENST00000558989 POLR1AO95602 1720 aaPredicted RBP14.57□□□□□ -0.08
SPG11-214ENST00000558989 FKBP8Q14318 412 aa14.57□□□□□ -0.08
SPG11-214ENST00000558989 EFCAB6Q5THR3 1501 aa14.56□□□□□ -0.08
SPG11-214ENST00000558989 GCC2Q8IWJ2 1684 aa14.56□□□□□ -0.08
SPG11-214ENST00000558989 DMRT2Q9Y5R5 561 aa14.55□□□□□ -0.08
SPG11-214ENST00000558989 NUP155O75694 1391 aa14.55□□□□□ -0.08
SPG11-214ENST00000558989 TET3O43151 1660 aa14.55□□□□□ -0.08
SPG11-214ENST00000558989 NLRP1Q9C000 1473 aa14.55□□□□□ -0.08
SPG11-214ENST00000558989 HOMEZQ8IX15 550 aa14.55□□□□□ -0.08
SPG11-214ENST00000558989 LMTK2Q8IWU2 1503 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 PIK3C2BO00750 1634 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 UBR1Q8IWV7 1749 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 ARHGAP31Q2M1Z3 1444 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 E9PCH4 1651 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 STAG3Q9UJ98 1225 aa14.54□□□□□ -0.08
SPG11-214ENST00000558989 FOXD1Q16676 465 aa14.53□□□□□ -0.08
SPG11-214ENST00000558989 MYO5BQ9ULV0 1848 aa14.53□□□□□ -0.08
SPG11-214ENST00000558989 SYNMO15061 1565 aa14.53□□□□□ -0.08
SPG11-214ENST00000558989 IQGAP3Q86VI3 1631 aa14.53□□□□□ -0.08
SPG11-214ENST00000558989 ERICH6Q7L0X2 663 aa14.52□□□□□ -0.08
SPG11-214ENST00000558989 THEMISQ8N1K5 641 aaPredicted RBP14.52□□□□□ -0.08
SPG11-214ENST00000558989 PLA2R1Q13018 1463 aa14.52□□□□□ -0.09
SPG11-214ENST00000558989 POTEDQ86YR6 584 aa14.52□□□□□ -0.09
SPG11-214ENST00000558989 TRIM52Q96A61 297 aa14.52□□□□□ -0.09
SPG11-214ENST00000558989 NAIPQ13075 1403 aa14.51□□□□□ -0.09
SPG11-214ENST00000558989 PKD2Q13563 968 aa14.5□□□□□ -0.09
SPG11-214ENST00000558989 PTPRTO14522 1441 aa14.5□□□□□ -0.09
SPG11-214ENST00000558989 IDI1Q13907 227 aa14.5□□□□□ -0.09
SPG11-214ENST00000558989 ILDR1Q86SU0 546 aaPredicted RBP14.5□□□□□ -0.09
SPG11-214ENST00000558989 ANKLE2Q86XL3 938 aa14.5□□□□□ -0.09
SPG11-214ENST00000558989 VSIG10Q8N0Z9 540 aa14.5□□□□□ -0.09
SPG11-214ENST00000558989 CHGAP10645 457 aaKnown RBP14.49□□□□□ -0.09
SPG11-214ENST00000558989 NEURL4Q96JN8 1562 aa14.49□□□□□ -0.09
SPG11-214ENST00000558989 ZNF335Q9H4Z2 1342 aaPredicted RBP14.47□□□□□ -0.09
SPG11-214ENST00000558989 FOXD4L1Q9NU39 408 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms