RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 RBM42Q9BTD8 480 aaKnown RBP18.7■□□□□ 0.58
TPM1-216ENST00000558910 MBD5Q9P267 1494 aa18.7■□□□□ 0.58
TPM1-216ENST00000558910 MAP3K1Q13233 1512 aa18.69■□□□□ 0.58
TPM1-216ENST00000558910 TSPY4P0CV99 314 aa18.68■□□□□ 0.58
TPM1-216ENST00000558910 TSPY10P0CW01 314 aa18.68■□□□□ 0.58
TPM1-216ENST00000558910 HSPA2P54652 639 aa18.67■□□□□ 0.58
TPM1-216ENST00000558910 MYOM3Q5VTT5 1437 aa18.66■□□□□ 0.58
TPM1-216ENST00000558910 CCDC141Q6ZP82 1450 aa18.66■□□□□ 0.58
TPM1-216ENST00000558910 A2MP01023 1474 aa18.65■□□□□ 0.58
TPM1-216ENST00000558910 INO80Q9ULG1 1556 aaPredicted RBP18.65■□□□□ 0.58
TPM1-216ENST00000558910 KIF3BO15066 747 aa18.62■□□□□ 0.57
TPM1-216ENST00000558910 REREQ9P2R6 1566 aa18.61■□□□□ 0.57
TPM1-216ENST00000558910 FAM50AQ14320 339 aaKnown RBP18.61■□□□□ 0.57
TPM1-216ENST00000558910 CHIC2Q9UKJ5 165 aa18.61■□□□□ 0.57
TPM1-216ENST00000558910 AGLP35573 1532 aa18.6■□□□□ 0.57
TPM1-216ENST00000558910 RSPH4AQ5TD94 716 aa18.6■□□□□ 0.57
TPM1-216ENST00000558910 RTEL1-TNFRSF6BF6WH68 1400 aa18.57■□□□□ 0.56
TPM1-216ENST00000558910 MIA2Q96PC5 1412 aa18.57■□□□□ 0.56
TPM1-216ENST00000558910 MKRN4PQ13434 485 aaPredicted RBP18.57■□□□□ 0.56
TPM1-216ENST00000558910 DHX29Q7Z478 1369 aaKnown RBP18.56■□□□□ 0.56
TPM1-216ENST00000558910 RRP7BPQ9NSQ0 103 aa18.56■□□□□ 0.56
TPM1-216ENST00000558910 LMTK3Q96Q04 1460 aa18.56■□□□□ 0.56
TPM1-216ENST00000558910 FGD6Q6ZV73 1430 aa18.56■□□□□ 0.56
TPM1-216ENST00000558910 PTPN23Q9H3S7 1636 aa18.56■□□□□ 0.56
TPM1-216ENST00000558910 ADGBQ8N7X0 1667 aa18.55■□□□□ 0.56
TPM1-216ENST00000558910 ARHGEF5Q12774 1597 aa18.55■□□□□ 0.56
TPM1-216ENST00000558910 PLXNC1O60486 1568 aa18.54■□□□□ 0.56
TPM1-216ENST00000558910 ZMYM3Q14202 1370 aa18.53■□□□□ 0.56
TPM1-216ENST00000558910 CLTCQ00610 1675 aaKnown RBP18.52■□□□□ 0.56
TPM1-216ENST00000558910 C3P01024 1663 aa18.51■□□□□ 0.55
TPM1-216ENST00000558910 ITGAEP38570 1179 aa18.51■□□□□ 0.55
TPM1-216ENST00000558910 ABCC5O15440 1437 aa18.5■□□□□ 0.55
TPM1-216ENST00000558910 WASHC2CQ9Y4E1 1318 aa18.49■□□□□ 0.55
TPM1-216ENST00000558910 CNTLNQ9NXG0 1405 aa18.49■□□□□ 0.55
TPM1-216ENST00000558910 DAPK1P53355 1430 aa18.49■□□□□ 0.55
TPM1-216ENST00000558910 UHRF1BP1Q6BDS2 1440 aa18.49■□□□□ 0.55
TPM1-216ENST00000558910 KIF15Q9NS87 1388 aa18.46■□□□□ 0.55
TPM1-216ENST00000558910 FBXO31Q5XUX0 539 aaPredicted RBP18.46■□□□□ 0.55
TPM1-216ENST00000558910 FBXO41Q8TF61 875 aa18.46■□□□□ 0.55
TPM1-216ENST00000558910 MAST1Q9Y2H9 1570 aa18.44■□□□□ 0.54
TPM1-216ENST00000558910 TCOF1Q13428 1488 aaKnown RBP18.44■□□□□ 0.54
TPM1-216ENST00000558910 PREX1Q8TCU6 1659 aa18.44■□□□□ 0.54
TPM1-216ENST00000558910 DNMT1P26358 1616 aaKnown RBP18.41■□□□□ 0.54
TPM1-216ENST00000558910 ANKRD30AQ9BXX3 1397 aa18.4■□□□□ 0.54
TPM1-216ENST00000558910 PTPRKQ15262 1439 aa18.4■□□□□ 0.54
TPM1-216ENST00000558910 CROCC2H7BZ55 1655 aa18.39■□□□□ 0.53
TPM1-216ENST00000558910 DUOX2Q9NRD8 1548 aa18.39■□□□□ 0.53
TPM1-216ENST00000558910 MROH2AA6NES4 1674 aa18.38■□□□□ 0.53
TPM1-216ENST00000558910 AKT1S1Q96B36 256 aa18.38■□□□□ 0.53
TPM1-216ENST00000558910 SHANK2Q9UPX8 1470 aa18.38■□□□□ 0.53
TPM1-216ENST00000558910 KDM5DQ9BY66 1539 aa18.38■□□□□ 0.53
TPM1-216ENST00000558910 SETD1BQ9UPS6 1966 aaKnown RBP18.37■□□□□ 0.53
TPM1-216ENST00000558910 NPATQ14207 1427 aa18.35■□□□□ 0.53
TPM1-216ENST00000558910 NCKAP5LQ9HCH0 1330 aa18.35■□□□□ 0.53
TPM1-216ENST00000558910 TNRQ92752 1358 aa18.34■□□□□ 0.53
TPM1-216ENST00000558910 NCOA1Q15788 1441 aa18.32■□□□□ 0.52
TPM1-216ENST00000558910 ABCC3O15438 1527 aa18.32■□□□□ 0.52
TPM1-216ENST00000558910 SPDYE2BA6NHP3 402 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 SOCS7O14512 581 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 SPDYE6P0CI01 402 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 SPDYE2Q495Y8 402 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 CEP152O94986 1710 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 ERBINQ96RT1 1412 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 MYO3AQ8NEV4 1616 aa18.31■□□□□ 0.52
TPM1-216ENST00000558910 RNF17Q9BXT8 1623 aaKnown RBP18.31■□□□□ 0.52
TPM1-216ENST00000558910 CFAP65Q6ZU64 1925 aaKnown RBP18.3■□□□□ 0.52
TPM1-216ENST00000558910 PZPP20742 1482 aa18.3■□□□□ 0.52
TPM1-216ENST00000558910 CAMSAP1Q5T5Y3 1602 aa18.3■□□□□ 0.52
TPM1-216ENST00000558910 EIF2AK4Q9P2K8 1649 aaKnown RBP18.3■□□□□ 0.52
TPM1-216ENST00000558910 KANK1Q14678 1352 aa18.3■□□□□ 0.52
TPM1-216ENST00000558910 MROH1Q8NDA8 1641 aa18.29■□□□□ 0.52
TPM1-216ENST00000558910 ILDR2Q71H61 639 aa18.28■□□□□ 0.52
TPM1-216ENST00000558910 CEP170BQ9Y4F5 1589 aaPredicted RBP18.27■□□□□ 0.52
TPM1-216ENST00000558910 STRCQ7RTU9 1775 aa18.27■□□□□ 0.51
TPM1-216ENST00000558910 ANKRD50Q9ULJ7 1429 aa18.26■□□□□ 0.51
TPM1-216ENST00000558910 ADGRL2O95490 1459 aa18.25■□□□□ 0.51
TPM1-216ENST00000558910 REM2Q8IYK8 340 aaPredicted RBP18.24■□□□□ 0.51
TPM1-216ENST00000558910 A2ML1A8K2U0 1454 aa18.24■□□□□ 0.51
TPM1-216ENST00000558910 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.23■□□□□ 0.51
TPM1-216ENST00000558910 ERVK-7P63135 1459 aa18.22■□□□□ 0.51
TPM1-216ENST00000558910 FAM135AQ9P2D6 1515 aa18.22■□□□□ 0.51
TPM1-216ENST00000558910 STAG3Q9UJ98 1225 aa18.21■□□□□ 0.51
TPM1-216ENST00000558910 PRDM15P57071 1507 aaPredicted RBP18.21■□□□□ 0.51
TPM1-216ENST00000558910 ZC3H13Q5T200 1668 aaKnown RBP18.21■□□□□ 0.51
TPM1-216ENST00000558910 CERKQ8TCT0 537 aa18.2■□□□□ 0.5
TPM1-216ENST00000558910 ZNF142P52746 1687 aaPredicted RBP18.19■□□□□ 0.5
TPM1-216ENST00000558910 THEMISQ8N1K5 641 aaPredicted RBP18.19■□□□□ 0.5
TPM1-216ENST00000558910 ZNF692Q9BU19 519 aaPredicted RBP18.19■□□□□ 0.5
TPM1-216ENST00000558910 PKD2Q13563 968 aa18.18■□□□□ 0.5
TPM1-216ENST00000558910 UGGT1Q9NYU2 1555 aa18.17■□□□□ 0.5
TPM1-216ENST00000558910 ANKLE2Q86XL3 938 aa18.17■□□□□ 0.5
TPM1-216ENST00000558910 ZNF335Q9H4Z2 1342 aaPredicted RBP18.17■□□□□ 0.5
TPM1-216ENST00000558910 DEPDC5O75140 1603 aa18.16■□□□□ 0.5
TPM1-216ENST00000558910 PTPRTO14522 1441 aa18.16■□□□□ 0.5
TPM1-216ENST00000558910 NLRP1Q9C000 1473 aa18.16■□□□□ 0.5
TPM1-216ENST00000558910 SPATA31D1Q6ZQQ2 1576 aa18.16■□□□□ 0.5
TPM1-216ENST00000558910 ROCK1Q13464 1354 aa18.16■□□□□ 0.5
TPM1-216ENST00000558910 RRBP1Q9P2E9 1410 aaKnown RBP18.15■□□□□ 0.5
TPM1-216ENST00000558910 CHRDL2Q6WN34 429 aa18.15■□□□□ 0.5
TPM1-216ENST00000558910 CHGAP10645 457 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms