RNA–Protein interactions for RNA: ENST00000558763.1

SMAD3-207, Transcript of SMAD family member 3, humanhuman

TSL 2

Gene SMAD3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-207ENST00000558763 ARHGEF40Q8TER5 1519 aa18.79■□□□□ 0.6
SMAD3-207ENST00000558763 A2MP01023 1474 aa18.78■□□□□ 0.6
SMAD3-207ENST00000558763 ERBINQ96RT1 1412 aa18.77■□□□□ 0.59
SMAD3-207ENST00000558763 ANKRD30BQ9BXX2 1392 aa18.76■□□□□ 0.59
SMAD3-207ENST00000558763 DHX29Q7Z478 1369 aaKnown RBP18.75■□□□□ 0.59
SMAD3-207ENST00000558763 ATP10AO60312 1499 aa18.73■□□□□ 0.59
SMAD3-207ENST00000558763 PPP1R15AO75807 674 aaPredicted RBP18.73■□□□□ 0.59
SMAD3-207ENST00000558763 FOXD1Q16676 465 aa18.73■□□□□ 0.59
SMAD3-207ENST00000558763 UNC13BO14795 1591 aa18.72■□□□□ 0.59
SMAD3-207ENST00000558763 DIEXFQ68CQ4 756 aaKnown RBP18.72■□□□□ 0.59
SMAD3-207ENST00000558763 TONSLQ96HA7 1378 aa18.72■□□□□ 0.59
SMAD3-207ENST00000558763 EIF2AK4Q9P2K8 1649 aaKnown RBP18.72■□□□□ 0.59
SMAD3-207ENST00000558763 RPRD2Q5VT52 1461 aaKnown RBP18.71■□□□□ 0.58
SMAD3-207ENST00000558763 SIGLEC1Q9BZZ2 1709 aa18.7■□□□□ 0.58
SMAD3-207ENST00000558763 SLC4A1APQ9BWU0 796 aaKnown RBP18.7■□□□□ 0.58
SMAD3-207ENST00000558763 KIF3BO15066 747 aa18.7■□□□□ 0.58
SMAD3-207ENST00000558763 REREQ9P2R6 1566 aa18.69■□□□□ 0.58
SMAD3-207ENST00000558763 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.67■□□□□ 0.589e-7■□□□□ 9.1
SMAD3-207ENST00000558763 DEPDC5O75140 1603 aa18.66■□□□□ 0.58
SMAD3-207ENST00000558763 NUP155O75694 1391 aa18.66■□□□□ 0.58
SMAD3-207ENST00000558763 FAM135AQ9P2D6 1515 aa18.65■□□□□ 0.58
SMAD3-207ENST00000558763 BCORL1Q5H9F3 1711 aa18.65■□□□□ 0.58
SMAD3-207ENST00000558763 RNF17Q9BXT8 1623 aaKnown RBP18.65■□□□□ 0.58
SMAD3-207ENST00000558763 IQGAP3Q86VI3 1631 aa18.64■□□□□ 0.57
SMAD3-207ENST00000558763 MROH1Q8NDA8 1641 aa18.64■□□□□ 0.57
SMAD3-207ENST00000558763 AGLP35573 1532 aa18.63■□□□□ 0.57
SMAD3-207ENST00000558763 GGT6Q6P531 493 aa18.63■□□□□ 0.57
SMAD3-207ENST00000558763 PRDM15P57071 1507 aaPredicted RBP18.63■□□□□ 0.57
SMAD3-207ENST00000558763 ARID4BQ4LE39 1312 aaPredicted RBP18.62■□□□□ 0.57
SMAD3-207ENST00000558763 PKD2Q13563 968 aa18.61■□□□□ 0.57
SMAD3-207ENST00000558763 MLECQ14165 292 aa18.59■□□□□ 0.57
SMAD3-207ENST00000558763 KANK1Q14678 1352 aa18.58■□□□□ 0.56
SMAD3-207ENST00000558763 L3MBTL2Q969R5 705 aa18.57■□□□□ 0.56
SMAD3-207ENST00000558763 CEP152O94986 1710 aa18.57■□□□□ 0.56
SMAD3-207ENST00000558763 VWDEQ8N2E2 1590 aa18.56■□□□□ 0.56
SMAD3-207ENST00000558763 WASHC2CQ9Y4E1 1318 aa18.53■□□□□ 0.56
SMAD3-207ENST00000558763 ABCC3O15438 1527 aa18.53■□□□□ 0.56
SMAD3-207ENST00000558763 PLA2R1Q13018 1463 aa18.52■□□□□ 0.56
SMAD3-207ENST00000558763 TET3O43151 1660 aa18.52■□□□□ 0.55
SMAD3-207ENST00000558763 ZC3H13Q5T200 1668 aaKnown RBP18.52■□□□□ 0.55
SMAD3-207ENST00000558763 CLTCQ00610 1675 aaKnown RBP18.5■□□□□ 0.55
SMAD3-207ENST00000558763 CAMSAP1Q5T5Y3 1602 aa18.5■□□□□ 0.55
SMAD3-207ENST00000558763 LMTK2Q8IWU2 1503 aa18.5■□□□□ 0.55
SMAD3-207ENST00000558763 E9PCH4 1651 aa18.49■□□□□ 0.55
SMAD3-207ENST00000558763 EFCAB6Q5THR3 1501 aa18.49■□□□□ 0.55
SMAD3-207ENST00000558763 NBPF8Q3BBV2 869 aa18.47■□□□□ 0.55
SMAD3-207ENST00000558763 ESF1Q9H501 851 aaKnown RBP18.46■□□□□ 0.55
SMAD3-207ENST00000558763 FER1L4A9Z1Z3 1794 aa18.46■□□□□ 0.55
SMAD3-207ENST00000558763 MIER1Q8N108 512 aa18.44■□□□□ 0.54
SMAD3-207ENST00000558763 PPP6R1Q9UPN7 881 aa18.44■□□□□ 0.54
SMAD3-207ENST00000558763 NPATQ14207 1427 aa18.43■□□□□ 0.54
SMAD3-207ENST00000558763 MADDQ8WXG6 1647 aa18.43■□□□□ 0.54
SMAD3-207ENST00000558763 UHRF1BP1Q6BDS2 1440 aa18.42■□□□□ 0.54
SMAD3-207ENST00000558763 HIRIP3Q9BW71 556 aaPredicted RBP18.42■□□□□ 0.54
SMAD3-207ENST00000558763 CFAP65Q6ZU64 1925 aaKnown RBP18.41■□□□□ 0.54
SMAD3-207ENST00000558763 SPHKAPQ2M3C7 1700 aa18.4■□□□□ 0.54
SMAD3-207ENST00000558763 CCDC144AA2RUR9 1427 aa18.4■□□□□ 0.54
SMAD3-207ENST00000558763 ADAMTSL3P82987 1691 aa18.39■□□□□ 0.54
SMAD3-207ENST00000558763 CNTLNQ9NXG0 1405 aa18.39■□□□□ 0.53
SMAD3-207ENST00000558763 MROH2AA6NES4 1674 aa18.39■□□□□ 0.53
SMAD3-207ENST00000558763 RIMS1Q86UR5 1692 aaKnown RBP18.39■□□□□ 0.53
SMAD3-207ENST00000558763 ARHGAP31Q2M1Z3 1444 aa18.39■□□□□ 0.53
SMAD3-207ENST00000558763 SPATA31E1Q6ZUB1 1445 aa18.38■□□□□ 0.53
SMAD3-207ENST00000558763 TRPM2O94759 1503 aa18.37■□□□□ 0.53
SMAD3-207ENST00000558763 ZMYM3Q14202 1370 aa18.37■□□□□ 0.53
SMAD3-207ENST00000558763 PTPRTO14522 1441 aa18.37■□□□□ 0.53
SMAD3-207ENST00000558763 PREX1Q8TCU6 1659 aa18.36■□□□□ 0.53
SMAD3-207ENST00000558763 RALGAPBQ86X10 1494 aa18.35■□□□□ 0.53
SMAD3-207ENST00000558763 HSPA5P11021 654 aaKnown RBP18.35■□□□□ 0.53
SMAD3-207ENST00000558763 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
SMAD3-207ENST00000558763 C3P01024 1663 aa18.35■□□□□ 0.53
SMAD3-207ENST00000558763 FBXO31Q5XUX0 539 aaPredicted RBP18.35■□□□□ 0.53
SMAD3-207ENST00000558763 UGGT1Q9NYU2 1555 aa18.34■□□□□ 0.53
SMAD3-207ENST00000558763 ERVK-7P63135 1459 aa18.33■□□□□ 0.53
SMAD3-207ENST00000558763 CLTCL1P53675 1640 aa18.33■□□□□ 0.53
SMAD3-207ENST00000558763 SYNMO15061 1565 aa18.33■□□□□ 0.52
SMAD3-207ENST00000558763 CEBPAP49715 358 aaPredicted RBP18.33■□□□□ 0.52
SMAD3-207ENST00000558763 NOS1P29475 1434 aa18.32■□□□□ 0.52
SMAD3-207ENST00000558763 POLR1AO95602 1720 aaPredicted RBP18.32■□□□□ 0.52
SMAD3-207ENST00000558763 EIF4G2P78344 907 aaKnown RBP eCLIP18.31■□□□□ 0.52
SMAD3-207ENST00000558763 TRPM1Q7Z4N2 1603 aa18.31■□□□□ 0.52
SMAD3-207ENST00000558763 SPATA31D1Q6ZQQ2 1576 aa18.3■□□□□ 0.52
SMAD3-207ENST00000558763 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
SMAD3-207ENST00000558763 PRAG1Q86YV5 1406 aa18.29■□□□□ 0.52
SMAD3-207ENST00000558763 WASHC2AQ641Q2 1341 aa18.27■□□□□ 0.52
SMAD3-207ENST00000558763 PIK3C2BO00750 1634 aa18.27■□□□□ 0.51
SMAD3-207ENST00000558763 NEURL4Q96JN8 1562 aa18.27■□□□□ 0.51
SMAD3-207ENST00000558763 DCAF11Q8TEB1 546 aa18.26■□□□□ 0.51
SMAD3-207ENST00000558763 PTPRMP28827 1452 aa18.25■□□□□ 0.51
SMAD3-207ENST00000558763 TNRQ92752 1358 aa18.25■□□□□ 0.51
SMAD3-207ENST00000558763 USP47Q96K76 1375 aa18.24■□□□□ 0.51
SMAD3-207ENST00000558763 C11orf95C9JLR9 678 aaPredicted RBP18.24■□□□□ 0.51
SMAD3-207ENST00000558763 ZNF326Q5BKZ1 582 aaKnown RBP18.24■□□□□ 0.51
SMAD3-207ENST00000558763 KIF1BO60333 1816 aa18.23■□□□□ 0.51
SMAD3-207ENST00000558763 LAMC1P11047 1609 aa18.22■□□□□ 0.51
SMAD3-207ENST00000558763 KDM4FA0A1W2PPD8 638 aa18.22■□□□□ 0.51
SMAD3-207ENST00000558763 CHGAP10645 457 aaKnown RBP18.22■□□□□ 0.51
SMAD3-207ENST00000558763 IDI1Q13907 227 aa18.22■□□□□ 0.51
SMAD3-207ENST00000558763 RGL3Q3MIN7 710 aa18.21■□□□□ 0.51
SMAD3-207ENST00000558763 SLC52A1Q9NWF4 448 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms