RNA–Protein interactions for RNA: ENST00000558649.5

RABGGTA-206, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 2

Gene RABGGTA, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-206ENST00000558649 CNTLNQ9NXG0 1405 aa24.23■■□□□ 1.47
RABGGTA-206ENST00000558649 ADGRL2O95490 1459 aa24.23■■□□□ 1.47
RABGGTA-206ENST00000558649 RNF17Q9BXT8 1623 aaKnown RBP24.23■■□□□ 1.47
RABGGTA-206ENST00000558649 NCOA1Q15788 1441 aa24.21■■□□□ 1.47
RABGGTA-206ENST00000558649 ERBINQ96RT1 1412 aa24.2■■□□□ 1.46
RABGGTA-206ENST00000558649 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.2■■□□□ 1.46
RABGGTA-206ENST00000558649 KDM5DQ9BY66 1539 aa24.19■■□□□ 1.46
RABGGTA-206ENST00000558649 MROH1Q8NDA8 1641 aa24.17■■□□□ 1.46
RABGGTA-206ENST00000558649 CEP152O94986 1710 aa24.15■■□□□ 1.46
RABGGTA-206ENST00000558649 ZMYM3Q14202 1370 aa24.15■■□□□ 1.46
RABGGTA-206ENST00000558649 PPP6R1Q9UPN7 881 aa24.14■■□□□ 1.45
RABGGTA-206ENST00000558649 ZC3H13Q5T200 1668 aaKnown RBP24.14■■□□□ 1.45
RABGGTA-206ENST00000558649 PREX1Q8TCU6 1659 aa24.14■■□□□ 1.45
RABGGTA-206ENST00000558649 WASHC2CQ9Y4E1 1318 aa24.13■■□□□ 1.45
RABGGTA-206ENST00000558649 FAM135AQ9P2D6 1515 aa24.13■■□□□ 1.45
RABGGTA-206ENST00000558649 DEPDC5O75140 1603 aa24.12■■□□□ 1.45
RABGGTA-206ENST00000558649 PRDM15P57071 1507 aaPredicted RBP24.11■■□□□ 1.45
RABGGTA-206ENST00000558649 ABCC3O15438 1527 aa24.1■■□□□ 1.45
RABGGTA-206ENST00000558649 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.1■■□□□ 1.452e-8■■□□□ 12.3
RABGGTA-206ENST00000558649 ROCK1Q13464 1354 aa24.1■■□□□ 1.45
RABGGTA-206ENST00000558649 ANKRD50Q9ULJ7 1429 aa24.1■■□□□ 1.45
RABGGTA-206ENST00000558649 LMTK3Q96Q04 1460 aa24.09■■□□□ 1.45
RABGGTA-206ENST00000558649 CAMSAP1Q5T5Y3 1602 aa24.08■■□□□ 1.45
RABGGTA-206ENST00000558649 UHRF1BP1Q6BDS2 1440 aa24.04■■□□□ 1.44
RABGGTA-206ENST00000558649 KANK1Q14678 1352 aa24.03■■□□□ 1.44
RABGGTA-206ENST00000558649 NPATQ14207 1427 aa24.03■■□□□ 1.44
RABGGTA-206ENST00000558649 MYO3AQ8NEV4 1616 aa24.02■■□□□ 1.44
RABGGTA-206ENST00000558649 PZPP20742 1482 aa24.02■■□□□ 1.44
RABGGTA-206ENST00000558649 GCC2Q8IWJ2 1684 aa24.02■■□□□ 1.44
RABGGTA-206ENST00000558649 SETD1BQ9UPS6 1966 aaKnown RBP24.01■■□□□ 1.43
RABGGTA-206ENST00000558649 UNC13BO14795 1591 aa24■■□□□ 1.43
RABGGTA-206ENST00000558649 HSPA2P54652 639 aa24■■□□□ 1.43
RABGGTA-206ENST00000558649 FBXO31Q5XUX0 539 aaPredicted RBP23.99■■□□□ 1.43
RABGGTA-206ENST00000558649 VWDEQ8N2E2 1590 aa23.99■■□□□ 1.43
RABGGTA-206ENST00000558649 CFAP65Q6ZU64 1925 aaKnown RBP23.98■■□□□ 1.43
RABGGTA-206ENST00000558649 ZNF142P52746 1687 aaPredicted RBP23.95■■□□□ 1.42
RABGGTA-206ENST00000558649 TNRQ92752 1358 aa23.94■■□□□ 1.42
RABGGTA-206ENST00000558649 NAIPQ13075 1403 aa23.93■■□□□ 1.42
RABGGTA-206ENST00000558649 CEP170BQ9Y4F5 1589 aaPredicted RBP23.93■■□□□ 1.42
RABGGTA-206ENST00000558649 LMTK2Q8IWU2 1503 aa23.93■■□□□ 1.42
RABGGTA-206ENST00000558649 EFCAB6Q5THR3 1501 aa23.92■■□□□ 1.42
RABGGTA-206ENST00000558649 ERVK-7P63135 1459 aa23.92■■□□□ 1.42
RABGGTA-206ENST00000558649 SPATA31D1Q6ZQQ2 1576 aa23.91■■□□□ 1.42
RABGGTA-206ENST00000558649 TET3O43151 1660 aa23.9■■□□□ 1.42
RABGGTA-206ENST00000558649 IQGAP3Q86VI3 1631 aa23.9■■□□□ 1.42
RABGGTA-206ENST00000558649 HFM1A2PYH4 1435 aa23.9■■□□□ 1.42
RABGGTA-206ENST00000558649 ARHGAP31Q2M1Z3 1444 aa23.88■■□□□ 1.41
RABGGTA-206ENST00000558649 NUP155O75694 1391 aa23.87■■□□□ 1.41
RABGGTA-206ENST00000558649 A2ML1A8K2U0 1454 aa23.86■■□□□ 1.41
RABGGTA-206ENST00000558649 E9PCH4 1651 aa23.83■■□□□ 1.41
RABGGTA-206ENST00000558649 NLRP1Q9C000 1473 aa23.82■■□□□ 1.4
RABGGTA-206ENST00000558649 STRCQ7RTU9 1775 aa23.82■■□□□ 1.4
RABGGTA-206ENST00000558649 SYNMO15061 1565 aa23.79■■□□□ 1.4
RABGGTA-206ENST00000558649 UGGT1Q9NYU2 1555 aa23.79■■□□□ 1.4
RABGGTA-206ENST00000558649 RPRD2Q5VT52 1461 aaKnown RBP23.79■■□□□ 1.4
RABGGTA-206ENST00000558649 TRIM52Q96A61 297 aa23.78■■□□□ 1.4
RABGGTA-206ENST00000558649 PIK3C2BO00750 1634 aa23.77■■□□□ 1.4
RABGGTA-206ENST00000558649 UBR1Q8IWV7 1749 aa23.76■■□□□ 1.39
RABGGTA-206ENST00000558649 NOS1P29475 1434 aa23.74■■□□□ 1.39
RABGGTA-206ENST00000558649 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
RABGGTA-206ENST00000558649 PLA2R1Q13018 1463 aa23.72■■□□□ 1.39
RABGGTA-206ENST00000558649 SETD5Q9C0A6 1442 aa23.71■■□□□ 1.39
RABGGTA-206ENST00000558649 NCKAP5LQ9HCH0 1330 aa23.71■■□□□ 1.39
RABGGTA-206ENST00000558649 SPHKAPQ2M3C7 1700 aa23.7■■□□□ 1.39
RABGGTA-206ENST00000558649 THEMISQ8N1K5 641 aaPredicted RBP23.69■■□□□ 1.38
RABGGTA-206ENST00000558649 STAG3Q9UJ98 1225 aa23.68■■□□□ 1.38
RABGGTA-206ENST00000558649 ADGRB3O60242 1522 aa23.66■■□□□ 1.38
RABGGTA-206ENST00000558649 IDI1Q13907 227 aa23.66■■□□□ 1.38
RABGGTA-206ENST00000558649 SLC4A1APQ9BWU0 796 aaKnown RBP23.65■■□□□ 1.38
RABGGTA-206ENST00000558649 DMRT2Q9Y5R5 561 aa23.65■■□□□ 1.38
RABGGTA-206ENST00000558649 MYO5BQ9ULV0 1848 aa23.65■■□□□ 1.38
RABGGTA-206ENST00000558649 RAB3GAP2Q9H2M9 1393 aa23.65■■□□□ 1.38
RABGGTA-206ENST00000558649 KDM5AP29375 1690 aaKnown RBP23.64■■□□□ 1.38
RABGGTA-206ENST00000558649 PKD2Q13563 968 aa23.63■■□□□ 1.37
RABGGTA-206ENST00000558649 NEURL4Q96JN8 1562 aa23.63■■□□□ 1.37
RABGGTA-206ENST00000558649 SLC52A1Q9NWF4 448 aa23.62■■□□□ 1.37
RABGGTA-206ENST00000558649 PTPRTO14522 1441 aa23.61■■□□□ 1.37
RABGGTA-206ENST00000558649 ANKLE2Q86XL3 938 aa23.6■■□□□ 1.37
RABGGTA-206ENST00000558649 CHGAP10645 457 aaKnown RBP23.59■■□□□ 1.37
RABGGTA-206ENST00000558649 TMEM131LA2VDJ0 1609 aa23.59■■□□□ 1.37
RABGGTA-206ENST00000558649 SLIT1O75093 1534 aa23.58■■□□□ 1.36
RABGGTA-206ENST00000558649 TRPM2O94759 1503 aa23.58■■□□□ 1.36
RABGGTA-206ENST00000558649 CLTCL1P53675 1640 aa23.57■■□□□ 1.36
RABGGTA-206ENST00000558649 IQGAP1P46940 1657 aa23.57■■□□□ 1.36
RABGGTA-206ENST00000558649 ARHGAP23Q9P227 1491 aa23.56■■□□□ 1.36
RABGGTA-206ENST00000558649 FOXD1Q16676 465 aa23.56■■□□□ 1.36
RABGGTA-206ENST00000558649 SCAF11Q99590 1463 aaKnown RBP23.56■■□□□ 1.36
RABGGTA-206ENST00000558649 TMEM2Q9UHN6 1383 aa23.55■■□□□ 1.36
RABGGTA-206ENST00000558649 NPHP4O75161 1426 aaPredicted RBP23.54■■□□□ 1.36
RABGGTA-206ENST00000558649 MPHOSPH9Q99550 1183 aa23.54■■□□□ 1.36
RABGGTA-206ENST00000558649 TXNDC2Q86VQ3 553 aa23.52■■□□□ 1.36
RABGGTA-206ENST00000558649 EID1Q9Y6B2 187 aa23.52■■□□□ 1.36
RABGGTA-206ENST00000558649 MED14O60244 1454 aa23.51■■□□□ 1.35
RABGGTA-206ENST00000558649 LTKP29376 864 aa23.51■■□□□ 1.35
RABGGTA-206ENST00000558649 KIF1BO60333 1816 aa23.51■■□□□ 1.35
RABGGTA-206ENST00000558649 ACIN1Q9UKV3 1341 aaKnown RBP23.51■■□□□ 1.35
RABGGTA-206ENST00000558649 SENP3Q9H4L4 574 aaPredicted RBP23.48■■□□□ 1.35
RABGGTA-206ENST00000558649 RIMS2Q9UQ26 1411 aa23.48■■□□□ 1.35
RABGGTA-206ENST00000558649 ZNF335Q9H4Z2 1342 aaPredicted RBP23.46■■□□□ 1.35
RABGGTA-206ENST00000558649 ZFYVE9O95405 1425 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms