RNA–Protein interactions for RNA: ENST00000557539.1

MTHFD1-216, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 4

Gene MTHFD1, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-216ENST00000557539 SLC24A3Q9HC58 644 aa9.25□□□□□ -0.93
MTHFD1-216ENST00000557539 AXIN2Q9Y2T1 843 aa9.25□□□□□ -0.93
MTHFD1-216ENST00000557539 SEMA3EO15041 775 aa9.24□□□□□ -0.93
MTHFD1-216ENST00000557539 PDE4AP27815 886 aa9.24□□□□□ -0.93
MTHFD1-216ENST00000557539 UPF1Q92900 1129 aaKnown RBP eCLIP9.23□□□□□ -0.93
MTHFD1-216ENST00000557539 TESPA1A2RU30 521 aaPredicted RBP9.22□□□□□ -0.93
MTHFD1-216ENST00000557539 LSM11P83369 360 aaKnown RBP eCLIP9.22□□□□□ -0.93
MTHFD1-216ENST00000557539 ANKRD13DQ6ZTN6 518 aa9.22□□□□□ -0.93
MTHFD1-216ENST00000557539 LARP6Q9BRS8 491 aaKnown RBP9.22□□□□□ -0.93
MTHFD1-216ENST00000557539 MFSD10Q14728 455 aa9.21□□□□□ -0.94
MTHFD1-216ENST00000557539 TBC1D12O60347 775 aa9.2□□□□□ -0.94
MTHFD1-216ENST00000557539 PBX2P40425 430 aa9.2□□□□□ -0.94
MTHFD1-216ENST00000557539 ERCC6L2Q5T890 1561 aa9.2□□□□□ -0.94
MTHFD1-216ENST00000557539 SUPT5HO00267 1087 aaKnown RBP9.19□□□□□ -0.94
MTHFD1-216ENST00000557539 DDX27Q96GQ7 796 aaKnown RBP9.19□□□□□ -0.94
MTHFD1-216ENST00000557539 BAZ1AQ9NRL2 1556 aaPredicted RBP9.19□□□□□ -0.94
MTHFD1-216ENST00000557539 PSDA5PKW4 1024 aaPredicted RBP9.18□□□□□ -0.94
MTHFD1-216ENST00000557539 RNF166Q96A37 237 aaPredicted RBP9.18□□□□□ -0.94
MTHFD1-216ENST00000557539 MYT1LQ9UL68 1186 aa9.18□□□□□ -0.94
MTHFD1-216ENST00000557539 ARHGEF11O15085 1522 aa9.17□□□□□ -0.94
MTHFD1-216ENST00000557539 ARHGAP33O14559 1287 aa9.16□□□□□ -0.94
MTHFD1-216ENST00000557539 EMILIN3Q9NT22 766 aa9.16□□□□□ -0.94
MTHFD1-216ENST00000557539 PSEN2P49810 448 aa9.15□□□□□ -0.94
MTHFD1-216ENST00000557539 DMRTA1Q5VZB9 504 aa9.15□□□□□ -0.94
MTHFD1-216ENST00000557539 ZMYND10O75800 440 aa9.14□□□□□ -0.95
MTHFD1-216ENST00000557539 PPP4R3BQ5MIZ7 849 aa9.14□□□□□ -0.95
MTHFD1-216ENST00000557539 SMYD5Q6GMV2 418 aa9.14□□□□□ -0.95
MTHFD1-216ENST00000557539 ANO8Q9HCE9 1232 aaPredicted RBP9.14□□□□□ -0.95
MTHFD1-216ENST00000557539 SHROOM4Q9ULL8 1493 aa9.13□□□□□ -0.95
MTHFD1-216ENST00000557539 PTGER2P43116 358 aa9.12□□□□□ -0.95
MTHFD1-216ENST00000557539 EVI5O60447 810 aa9.11□□□□□ -0.95
MTHFD1-216ENST00000557539 ADGRD1Q6QNK2 874 aa9.11□□□□□ -0.95
MTHFD1-216ENST00000557539 FOSBP53539 338 aa9.1□□□□□ -0.95
MTHFD1-216ENST00000557539 ZNF454Q8N9F8 522 aa9.1□□□□□ -0.95
MTHFD1-216ENST00000557539 THOC2Q8NI27 1593 aaKnown RBP9.1□□□□□ -0.95
MTHFD1-216ENST00000557539 HRO43593 1189 aa9.08□□□□□ -0.96
MTHFD1-216ENST00000557539 MAP3K9P80192 1104 aa9.08□□□□□ -0.96
MTHFD1-216ENST00000557539 CAMK2BQ13554 666 aa9.08□□□□□ -0.96
MTHFD1-216ENST00000557539 TK2O00142 265 aa9.07□□□□□ -0.96
MTHFD1-216ENST00000557539 BARGINQ6ZT62 677 aa9.07□□□□□ -0.96
MTHFD1-216ENST00000557539 KCNK17Q96T54 332 aa9.07□□□□□ -0.96
MTHFD1-216ENST00000557539 JPH4Q96JJ6 628 aa9.06□□□□□ -0.96
MTHFD1-216ENST00000557539 BCL2L12Q9HB09 334 aa9.06□□□□□ -0.96
MTHFD1-216ENST00000557539 AK7Q96M32 723 aa9.04□□□□□ -0.96
MTHFD1-216ENST00000557539 ADAM33Q9BZ11 813 aa9.04□□□□□ -0.96
MTHFD1-216ENST00000557539 HECW2Q9P2P5 1572 aa9.03□□□□□ -0.96
MTHFD1-216ENST00000557539 KRI1Q8N9T8 703 aaKnown RBP9.03□□□□□ -0.96
MTHFD1-216ENST00000557539 GPBP1L1Q9HC44 474 aaPredicted RBP9.03□□□□□ -0.96
MTHFD1-216ENST00000557539 ARIH1Q9Y4X5 557 aaPredicted RBP9.03□□□□□ -0.96
MTHFD1-216ENST00000557539 RBM26Q5T8P6 1007 aaKnown RBP9.02□□□□□ -0.97
MTHFD1-216ENST00000557539 ZDHHC16Q969W1 377 aa9.02□□□□□ -0.97
MTHFD1-216ENST00000557539 PCDHGA10Q9Y5H3 936 aa9.02□□□□□ -0.97
MTHFD1-216ENST00000557539 DPYSL4O14531 572 aa9.01□□□□□ -0.97
MTHFD1-216ENST00000557539 GPIHBP1Q8IV16 184 aa9.01□□□□□ -0.97
MTHFD1-216ENST00000557539 IL27Q8NEV9 243 aa9.01□□□□□ -0.97
MTHFD1-216ENST00000557539 VPS9D1Q9Y2B5 631 aa9.01□□□□□ -0.97
MTHFD1-216ENST00000557539 NESP48681 1621 aa8.99□□□□□ -0.97
MTHFD1-216ENST00000557539 PTPREP23469 700 aa8.99□□□□□ -0.97
MTHFD1-216ENST00000557539 MLLT3P42568 568 aaPredicted RBP8.99□□□□□ -0.97
MTHFD1-216ENST00000557539 ZBED2Q9BTP6 218 aa8.99□□□□□ -0.97
MTHFD1-216ENST00000557539 SLC4A5Q9BY07 1137 aa8.99□□□□□ -0.97
MTHFD1-216ENST00000557539 ARAP1Q96P48 1450 aa8.98□□□□□ -0.97
MTHFD1-216ENST00000557539 BHMG1C9JSJ3 638 aaPredicted RBP8.97□□□□□ -0.97
MTHFD1-216ENST00000557539 KCNH8Q96L42 1107 aa8.97□□□□□ -0.97
MTHFD1-216ENST00000557539 SPATA31D1Q6ZQQ2 1576 aa8.97□□□□□ -0.97
MTHFD1-216ENST00000557539 PHF14O94880 888 aa8.96□□□□□ -0.98
MTHFD1-216ENST00000557539 KDM4CQ9H3R0 1056 aa8.96□□□□□ -0.98
MTHFD1-216ENST00000557539 SYNJ2O15056 1496 aa8.96□□□□□ -0.98
MTHFD1-216ENST00000557539 COL9A1P20849 921 aa8.95□□□□□ -0.98
MTHFD1-216ENST00000557539 ZMYND15Q9H091 742 aa8.95□□□□□ -0.98
MTHFD1-216ENST00000557539 SMARCA2P51531 1590 aa8.95□□□□□ -0.98
MTHFD1-216ENST00000557539 TYW1BQ6NUM6 668 aa8.93□□□□□ -0.98
MTHFD1-216ENST00000557539 KCTD12Q96CX2 325 aaKnown RBP8.93□□□□□ -0.98
MTHFD1-216ENST00000557539 TRIM66O15016 1216 aa8.92□□□□□ -0.98
MTHFD1-216ENST00000557539 PDE4DQ08499 809 aa8.92□□□□□ -0.98
MTHFD1-216ENST00000557539 HCSTQ9UBK5 93 aa8.92□□□□□ -0.98
MTHFD1-216ENST00000557539 PPP1R3GB7ZBB8 358 aa8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 UBTFP17480 764 aaKnown RBP8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 PROX2Q3B8N5 592 aa8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 DDX12PQ92771 950 aa8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 FBXW7Q969H0 707 aa8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 RSPH6AQ9H0K4 717 aa8.91□□□□□ -0.98
MTHFD1-216ENST00000557539 PDIA6Q15084 440 aa8.9□□□□□ -0.98
MTHFD1-216ENST00000557539 C6orf132Q5T0Z8 1188 aa8.89□□□□□ -0.99
MTHFD1-216ENST00000557539 STAC3Q96MF2 364 aa8.89□□□□□ -0.99
MTHFD1-216ENST00000557539 EPAS1Q99814 870 aa8.89□□□□□ -0.99
MTHFD1-216ENST00000557539 PODXL2Q9NZ53 605 aa8.89□□□□□ -0.99
MTHFD1-216ENST00000557539 RBM33Q96EV2 1170 aaKnown RBP8.87□□□□□ -0.99
MTHFD1-216ENST00000557539 PRIM1P49642 420 aaKnown RBP8.86□□□□□ -0.99
MTHFD1-216ENST00000557539 SPDYE16A6NNV3 312 aaPredicted RBP8.85□□□□□ -0.99
MTHFD1-216ENST00000557539 MRPL50Q8N5N7 158 aaKnown RBP8.85□□□□□ -0.99
MTHFD1-216ENST00000557539 RABGEF1Q9UJ41 708 aa8.85□□□□□ -0.99
MTHFD1-216ENST00000557539 EN1Q05925 392 aaPredicted RBP8.84□□□□□ -0.99
MTHFD1-216ENST00000557539 TSR1Q2NL82 804 aaKnown RBP8.84□□□□□ -0.99
MTHFD1-216ENST00000557539 THSD4Q6ZMP0 1018 aa8.84□□□□□ -0.99
MTHFD1-216ENST00000557539 FAM117AQ9C073 453 aa8.84□□□□□ -0.99
MTHFD1-216ENST00000557539 PLA2G2EQ9NZK7 142 aa8.84□□□□□ -0.99
MTHFD1-216ENST00000557539 PTPN5P54829 565 aa8.83□□□□□ -1
MTHFD1-216ENST00000557539 ARID3AQ99856 593 aa8.83□□□□□ -1
MTHFD1-216ENST00000557539 WNT2BQ93097 391 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms