RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 FAM135AQ9P2D6 1515 aa17.48■□□□□ 0.39
CCDC88C-213ENST00000557455 LTBP4Q8N2S1 1624 aa17.48■□□□□ 0.39
CCDC88C-213ENST00000557455 PLA2R1Q13018 1463 aa17.48■□□□□ 0.39
CCDC88C-213ENST00000557455 WASHC2CQ9Y4E1 1318 aa17.47■□□□□ 0.39
CCDC88C-213ENST00000557455 MAST1Q9Y2H9 1570 aa17.46■□□□□ 0.39
CCDC88C-213ENST00000557455 PKD2Q13563 968 aa17.46■□□□□ 0.39
CCDC88C-213ENST00000557455 MYOM3Q5VTT5 1437 aa17.46■□□□□ 0.39
CCDC88C-213ENST00000557455 MIA2Q96PC5 1412 aa17.46■□□□□ 0.39
CCDC88C-213ENST00000557455 A2ML1A8K2U0 1454 aa17.45■□□□□ 0.38
CCDC88C-213ENST00000557455 DNMT1P26358 1616 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-213ENST00000557455 PZPP20742 1482 aa17.44■□□□□ 0.38
CCDC88C-213ENST00000557455 TCOF1Q13428 1488 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-213ENST00000557455 FBXO31Q5XUX0 539 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-213ENST00000557455 TNRQ92752 1358 aa17.43■□□□□ 0.38
CCDC88C-213ENST00000557455 APLP2Q06481 763 aa17.43■□□□□ 0.38
CCDC88C-213ENST00000557455 IQSEC2Q5JU85 1478 aa17.43■□□□□ 0.38
CCDC88C-213ENST00000557455 RNF17Q9BXT8 1623 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-213ENST00000557455 POLR1AO95602 1720 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-213ENST00000557455 EIF2AK4Q9P2K8 1649 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-213ENST00000557455 ZC3H13Q5T200 1668 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-213ENST00000557455 ZNF335Q9H4Z2 1342 aaPredicted RBP17.4■□□□□ 0.38
CCDC88C-213ENST00000557455 PTPN23Q9H3S7 1636 aa17.37■□□□□ 0.37
CCDC88C-213ENST00000557455 CROCC2H7BZ55 1655 aa17.37■□□□□ 0.37
CCDC88C-213ENST00000557455 ABCC3O15438 1527 aa17.37■□□□□ 0.37
CCDC88C-213ENST00000557455 NLRP1Q9C000 1473 aa17.36■□□□□ 0.37
CCDC88C-213ENST00000557455 DUOX2Q9NRD8 1548 aa17.36■□□□□ 0.37
CCDC88C-213ENST00000557455 CEP152O94986 1710 aa17.35■□□□□ 0.37
CCDC88C-213ENST00000557455 CFAP65Q6ZU64 1925 aaKnown RBP17.35■□□□□ 0.37
CCDC88C-213ENST00000557455 UGGT1Q9NYU2 1555 aa17.35■□□□□ 0.37
CCDC88C-213ENST00000557455 THEMISQ8N1K5 641 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-213ENST00000557455 MROH1Q8NDA8 1641 aa17.34■□□□□ 0.37
CCDC88C-213ENST00000557455 NEURL4Q96JN8 1562 aa17.33■□□□□ 0.37
CCDC88C-213ENST00000557455 SHANK2Q9UPX8 1470 aa17.33■□□□□ 0.37
CCDC88C-213ENST00000557455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.33■□□□□ 0.36
CCDC88C-213ENST00000557455 SPATA31D1Q6ZQQ2 1576 aa17.32■□□□□ 0.36
CCDC88C-213ENST00000557455 ABCC5O15440 1437 aa17.32■□□□□ 0.36
CCDC88C-213ENST00000557455 ANKLE2Q86XL3 938 aa17.32■□□□□ 0.36
CCDC88C-213ENST00000557455 KIF15Q9NS87 1388 aa17.31■□□□□ 0.36
CCDC88C-213ENST00000557455 DAPK1P53355 1430 aa17.3■□□□□ 0.36
CCDC88C-213ENST00000557455 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
CCDC88C-213ENST00000557455 DEPDC5O75140 1603 aa17.29■□□□□ 0.36
CCDC88C-213ENST00000557455 UBAP1LF5GYI3 381 aa17.29■□□□□ 0.36
CCDC88C-213ENST00000557455 RRP7BPQ9NSQ0 103 aa17.29■□□□□ 0.36
CCDC88C-213ENST00000557455 ERVK-7P63135 1459 aa17.29■□□□□ 0.36
CCDC88C-213ENST00000557455 ERBINQ96RT1 1412 aa17.29■□□□□ 0.36
CCDC88C-213ENST00000557455 PRDM15P57071 1507 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-213ENST00000557455 MED14O60244 1454 aa17.26■□□□□ 0.35
CCDC88C-213ENST00000557455 NPHP4O75161 1426 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-213ENST00000557455 DISP3Q9P2K9 1392 aa17.26■□□□□ 0.35
CCDC88C-213ENST00000557455 CPS1P31327 1500 aa17.26■□□□□ 0.35
CCDC88C-213ENST00000557455 IQGAP1P46940 1657 aa17.26■□□□□ 0.35
CCDC88C-213ENST00000557455 UBR1Q8IWV7 1749 aa17.25■□□□□ 0.35
CCDC88C-213ENST00000557455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88C-213ENST00000557455 CHIC2Q9UKJ5 165 aa17.24■□□□□ 0.35
CCDC88C-213ENST00000557455 ANKRD30AQ9BXX3 1397 aa17.24■□□□□ 0.35
CCDC88C-213ENST00000557455 ARHGAP31Q2M1Z3 1444 aa17.23■□□□□ 0.35
CCDC88C-213ENST00000557455 KANK1Q14678 1352 aa17.23■□□□□ 0.35
CCDC88C-213ENST00000557455 VWDEQ8N2E2 1590 aa17.23■□□□□ 0.35
CCDC88C-213ENST00000557455 TOM1O60784 492 aa17.18■□□□□ 0.34
CCDC88C-213ENST00000557455 FAM50AQ14320 339 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-213ENST00000557455 STRCP1A6NGW2 1772 aa17.17■□□□□ 0.34
CCDC88C-213ENST00000557455 PIK3C2BO00750 1634 aa17.17■□□□□ 0.34
CCDC88C-213ENST00000557455 SCAF1Q9H7N4 1312 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-213ENST00000557455 ADGRL2O95490 1459 aa17.16■□□□□ 0.34
CCDC88C-213ENST00000557455 SCAF11Q99590 1463 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-213ENST00000557455 SLIT1O75093 1534 aa17.16■□□□□ 0.34
CCDC88C-213ENST00000557455 LMTK2Q8IWU2 1503 aa17.16■□□□□ 0.34
CCDC88C-213ENST00000557455 PIP4K2BP78356 416 aa17.15■□□□□ 0.34
CCDC88C-213ENST00000557455 TXNDC2Q86VQ3 553 aa17.15■□□□□ 0.34
CCDC88C-213ENST00000557455 ARHGAP23Q9P227 1491 aa17.14■□□□□ 0.33
CCDC88C-213ENST00000557455 STAG3Q9UJ98 1225 aa17.14■□□□□ 0.33
CCDC88C-213ENST00000557455 LTKP29376 864 aa17.13■□□□□ 0.33
CCDC88C-213ENST00000557455 ILDR2Q71H61 639 aa17.13■□□□□ 0.33
CCDC88C-213ENST00000557455 EID1Q9Y6B2 187 aa17.13■□□□□ 0.33
CCDC88C-213ENST00000557455 KDM5AP29375 1690 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-213ENST00000557455 SYNMO15061 1565 aa17.12■□□□□ 0.33
CCDC88C-213ENST00000557455 EFCAB6Q5THR3 1501 aa17.11■□□□□ 0.33
CCDC88C-213ENST00000557455 LRRC7Q96NW7 1537 aa17.11■□□□□ 0.33
CCDC88C-213ENST00000557455 TMEM2Q9UHN6 1383 aa17.1■□□□□ 0.33
CCDC88C-213ENST00000557455 ANKRD50Q9ULJ7 1429 aa17.1■□□□□ 0.33
CCDC88C-213ENST00000557455 HSPA1LP34931 641 aa17.09■□□□□ 0.33
CCDC88C-213ENST00000557455 IDI1Q13907 227 aa17.09■□□□□ 0.33
CCDC88C-213ENST00000557455 NOS1P29475 1434 aa17.08■□□□□ 0.32
CCDC88C-213ENST00000557455 ALKQ9UM73 1620 aa17.07■□□□□ 0.32
CCDC88C-213ENST00000557455 TET3O43151 1660 aa17.06■□□□□ 0.32
CCDC88C-213ENST00000557455 ADGRB3O60242 1522 aa17.06■□□□□ 0.32
CCDC88C-213ENST00000557455 RPRD2Q5VT52 1461 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-213ENST00000557455 SLC52A1Q9NWF4 448 aa17.05■□□□□ 0.32
CCDC88C-213ENST00000557455 XIRP1Q702N8 1843 aaKnown RBP17.05■□□□□ 0.32
CCDC88C-213ENST00000557455 GCC2Q8IWJ2 1684 aa17.04■□□□□ 0.32
CCDC88C-213ENST00000557455 UNC13BO14795 1591 aa17.03■□□□□ 0.32
CCDC88C-213ENST00000557455 SOCS7O14512 581 aa17.03■□□□□ 0.32
CCDC88C-213ENST00000557455 MYO5BQ9ULV0 1848 aa17.03■□□□□ 0.32
CCDC88C-213ENST00000557455 ROCK1Q13464 1354 aa17.01■□□□□ 0.31
CCDC88C-213ENST00000557455 MED1Q15648 1581 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-213ENST00000557455 SLC26A8Q96RN1 970 aa16.99■□□□□ 0.31
CCDC88C-213ENST00000557455 E9PCH4 1651 aa16.98■□□□□ 0.31
CCDC88C-213ENST00000557455 BCANQ96GW7 911 aa16.98■□□□□ 0.31
CCDC88C-213ENST00000557455 SENP3Q9H4L4 574 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-213ENST00000557455 IQGAP3Q86VI3 1631 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms