RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 SIGLEC1Q9BZZ2 1709 aa14.2□□□□□ -0.14
VRK1-206ENST00000557222 MLECQ14165 292 aa14.19□□□□□ -0.14
VRK1-206ENST00000557222 KDM5CP41229 1560 aa14.18□□□□□ -0.14
VRK1-206ENST00000557222 HSPA2P54652 639 aa14.18□□□□□ -0.14
VRK1-206ENST00000557222 CCDC61Q9Y6R9 512 aa14.18□□□□□ -0.14
VRK1-206ENST00000557222 ARHGAP5Q13017 1502 aa14.18□□□□□ -0.14
VRK1-206ENST00000557222 FER1L4A9Z1Z3 1794 aa14.18□□□□□ -0.14
VRK1-206ENST00000557222 CASKIN1Q8WXD9 1431 aa14.17□□□□□ -0.14
VRK1-206ENST00000557222 AFAP1Q8N556 730 aa14.17□□□□□ -0.14
VRK1-206ENST00000557222 CCDC18Q5T9S5 1454 aa14.17□□□□□ -0.14
VRK1-206ENST00000557222 MLH3Q9UHC1 1453 aa14.17□□□□□ -0.14
VRK1-206ENST00000557222 SETD1BQ9UPS6 1966 aaKnown RBP14.16□□□□□ -0.14
VRK1-206ENST00000557222 GALR2O43603 387 aaPredicted RBP14.16□□□□□ -0.14
VRK1-206ENST00000557222 REREQ9P2R6 1566 aa14.16□□□□□ -0.14
VRK1-206ENST00000557222 KLHL34Q8N239 644 aa14.13□□□□□ -0.15
VRK1-206ENST00000557222 AGLP35573 1532 aa14.12□□□□□ -0.15
VRK1-206ENST00000557222 CERKQ8TCT0 537 aa14.12□□□□□ -0.15
VRK1-206ENST00000557222 MYT1LQ9UL68 1186 aa14.12□□□□□ -0.15
VRK1-206ENST00000557222 CDC42BPBQ9Y5S2 1711 aa14.12□□□□□ -0.15
VRK1-206ENST00000557222 PREX1Q8TCU6 1659 aa14.11□□□□□ -0.15
VRK1-206ENST00000557222 LRRIQ1Q96JM4 1722 aa14.11□□□□□ -0.15
VRK1-206ENST00000557222 DIP2CQ9Y2E4 1556 aa14.11□□□□□ -0.15
VRK1-206ENST00000557222 CEBPAP49715 358 aaPredicted RBP14.1□□□□□ -0.15
VRK1-206ENST00000557222 PREX2Q70Z35 1606 aa14.1□□□□□ -0.15
VRK1-206ENST00000557222 ABCC1P33527 1531 aa14.1□□□□□ -0.15
VRK1-206ENST00000557222 TRAPPC8Q9Y2L5 1435 aa14.09□□□□□ -0.15
VRK1-206ENST00000557222 POTEIP0CG38 1075 aa14.09□□□□□ -0.15
VRK1-206ENST00000557222 FYCO1Q9BQS8 1478 aa14.09□□□□□ -0.15
VRK1-206ENST00000557222 UHRF1BP1Q6BDS2 1440 aa14.08□□□□□ -0.15
VRK1-206ENST00000557222 ESF1Q9H501 851 aaKnown RBP14.08□□□□□ -0.16
VRK1-206ENST00000557222 CNTLNQ9NXG0 1405 aa14.07□□□□□ -0.16
VRK1-206ENST00000557222 IFNLR1Q8IU57 520 aaPredicted RBP14.07□□□□□ -0.16
VRK1-206ENST00000557222 FAM212AQ96EL1 285 aa14.07□□□□□ -0.16
VRK1-206ENST00000557222 KIF12Q96FN5 646 aa14.07□□□□□ -0.16
VRK1-206ENST00000557222 ABCA6Q8N139 1617 aa14.06□□□□□ -0.16
VRK1-206ENST00000557222 MS4A3Q96HJ5 214 aa14.06□□□□□ -0.16
VRK1-206ENST00000557222 DCBLD2Q96PD2 775 aa14.06□□□□□ -0.16
VRK1-206ENST00000557222 ITSN2Q9NZM3 1697 aa14.05□□□□□ -0.16
VRK1-206ENST00000557222 KIAA1107Q9UPP5 1409 aa14.05□□□□□ -0.16
VRK1-206ENST00000557222 CDC42BPAQ5VT25 1732 aa14.04□□□□□ -0.16
VRK1-206ENST00000557222 KIDINS220Q9ULH0 1771 aa14.04□□□□□ -0.16
VRK1-206ENST00000557222 PTPRTO14522 1441 aa14.03□□□□□ -0.16
VRK1-206ENST00000557222 PLEKHH2Q8IVE3 1493 aa14.03□□□□□ -0.16
VRK1-206ENST00000557222 GPATCH8Q9UKJ3 1502 aaKnown RBP14.03□□□□□ -0.16
VRK1-206ENST00000557222 SPAG9O60271 1321 aaKnown RBP14.02□□□□□ -0.17
VRK1-206ENST00000557222 STRCQ7RTU9 1775 aa14.01□□□□□ -0.17
VRK1-206ENST00000557222 C3P01024 1663 aa14.01□□□□□ -0.17
VRK1-206ENST00000557222 SAMD9LQ8IVG5 1584 aa14.01□□□□□ -0.17
VRK1-206ENST00000557222 DCAF8Q5TAQ9 597 aa14.01□□□□□ -0.17
VRK1-206ENST00000557222 NPATQ14207 1427 aa14□□□□□ -0.17
VRK1-206ENST00000557222 MAP3K13O43283 966 aa14□□□□□ -0.17
VRK1-206ENST00000557222 CFDP1Q9UEE9 299 aaPredicted RBP14□□□□□ -0.17
VRK1-206ENST00000557222 ZNF777Q9ULD5 760 aaPredicted RBP14□□□□□ -0.17
VRK1-206ENST00000557222 HNRNPMP52272 730 aaKnown RBP eCLIP13.99□□□□□ -0.17
VRK1-206ENST00000557222 CCNB3Q8WWL7 1395 aa13.98□□□□□ -0.17
VRK1-206ENST00000557222 MROH2AA6NES4 1674 aa13.98□□□□□ -0.17
VRK1-206ENST00000557222 ZMYM3Q14202 1370 aa13.97□□□□□ -0.17
VRK1-206ENST00000557222 SYCP2Q9BX26 1530 aa13.97□□□□□ -0.17
VRK1-206ENST00000557222 MTUS2Q5JR59 1369 aa13.96□□□□□ -0.17
VRK1-206ENST00000557222 NCOA1Q15788 1441 aa13.96□□□□□ -0.18
VRK1-206ENST00000557222 ATP7AQ04656 1500 aa13.95□□□□□ -0.18
VRK1-206ENST00000557222 SPOCK2Q92563 424 aa13.95□□□□□ -0.18
VRK1-206ENST00000557222 A2MP01023 1474 aa13.94□□□□□ -0.18
VRK1-206ENST00000557222 IQSEC2Q5JU85 1478 aa13.94□□□□□ -0.18
VRK1-206ENST00000557222 PLXNC1O60486 1568 aa13.94□□□□□ -0.18
VRK1-206ENST00000557222 INO80Q9ULG1 1556 aaPredicted RBP13.92□□□□□ -0.18
VRK1-206ENST00000557222 RTEL1-TNFRSF6BF6WH68 1400 aa13.92□□□□□ -0.18
VRK1-206ENST00000557222 GSE1Q14687 1217 aa13.91□□□□□ -0.18
VRK1-206ENST00000557222 RSPH4AQ5TD94 716 aa13.91□□□□□ -0.18
VRK1-206ENST00000557222 SGIP1Q9BQI5 828 aa13.91□□□□□ -0.18
VRK1-206ENST00000557222 CEP162Q5TB80 1403 aa13.9□□□□□ -0.18
VRK1-206ENST00000557222 PKD2Q13563 968 aa13.9□□□□□ -0.18
VRK1-206ENST00000557222 PCDHB13Q9Y5F0 798 aa13.9□□□□□ -0.18
VRK1-206ENST00000557222 MBD5Q9P267 1494 aa13.9□□□□□ -0.18
VRK1-206ENST00000557222 SUPT6HQ7KZ85 1726 aaKnown RBP13.9□□□□□ -0.18
VRK1-206ENST00000557222 LTBP4Q8N2S1 1624 aa13.9□□□□□ -0.19
VRK1-206ENST00000557222 EHBP1L1Q8N3D4 1523 aa13.9□□□□□ -0.19
VRK1-206ENST00000557222 PTPRKQ15262 1439 aa13.9□□□□□ -0.19
VRK1-206ENST00000557222 PLA2R1Q13018 1463 aa13.89□□□□□ -0.19
VRK1-206ENST00000557222 PYGBP11216 843 aa13.89□□□□□ -0.19
VRK1-206ENST00000557222 GGT6Q6P531 493 aa13.89□□□□□ -0.19
VRK1-206ENST00000557222 TRPC6Q9Y210 931 aa13.89□□□□□ -0.19
VRK1-206ENST00000557222 ASTLQ6HA08 431 aaPredicted RBP13.88□□□□□ -0.19
VRK1-206ENST00000557222 CAMSAP1Q5T5Y3 1602 aa13.88□□□□□ -0.19
VRK1-206ENST00000557222 ADGBQ8N7X0 1667 aa13.88□□□□□ -0.19
VRK1-206ENST00000557222 DHX29Q7Z478 1369 aaKnown RBP13.87□□□□□ -0.19
VRK1-206ENST00000557222 ATMINO43313 823 aaPredicted RBP13.87□□□□□ -0.19
VRK1-206ENST00000557222 TIAM1Q13009 1591 aa13.87□□□□□ -0.19
VRK1-206ENST00000557222 ZNF644Q9H582 1327 aaPredicted RBP13.87□□□□□ -0.19
VRK1-206ENST00000557222 CLTCQ00610 1675 aaKnown RBP13.86□□□□□ -0.19
VRK1-206ENST00000557222 ZNF142P52746 1687 aaPredicted RBP13.85□□□□□ -0.19
VRK1-206ENST00000557222 FAM135AQ9P2D6 1515 aa13.85□□□□□ -0.19
VRK1-206ENST00000557222 IFNL1Q8IU54 200 aa13.85□□□□□ -0.19
VRK1-206ENST00000557222 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
VRK1-206ENST00000557222 TCOF1Q13428 1488 aaKnown RBP13.85□□□□□ -0.19
VRK1-206ENST00000557222 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
VRK1-206ENST00000557222 CEP170BQ9Y4F5 1589 aaPredicted RBP13.83□□□□□ -0.2
VRK1-206ENST00000557222 MYO3AQ8NEV4 1616 aa13.82□□□□□ -0.2
VRK1-206ENST00000557222 TIE1P35590 1138 aa13.82□□□□□ -0.2
VRK1-206ENST00000557222 BMP2KQ9NSY1 1161 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms