RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 ZSWIM6Q9HCJ5 1215 aa9.02□□□□□ -0.97
TDP1-215ENST00000556498 RIMBP2O15034 1052 aa9.01□□□□□ -0.97
TDP1-215ENST00000556498 ARSIQ5FYB1 569 aa9.01□□□□□ -0.97
TDP1-215ENST00000556498 GPR153Q6NV75 609 aa9.01□□□□□ -0.97
TDP1-215ENST00000556498 PCDHGA10Q9Y5H3 936 aa9□□□□□ -0.97
TDP1-215ENST00000556498 FGD1P98174 961 aa8.99□□□□□ -0.97
TDP1-215ENST00000556498 GLIPR1L2Q4G1C9 344 aa8.99□□□□□ -0.97
TDP1-215ENST00000556498 KRI1Q8N9T8 703 aaKnown RBP8.99□□□□□ -0.97
TDP1-215ENST00000556498 KHSRPQ92945 711 aaKnown RBP eCLIP8.99□□□□□ -0.97
TDP1-215ENST00000556498 OTUD5Q96G74 571 aa8.99□□□□□ -0.97
TDP1-215ENST00000556498 NUDT7P0C024 238 aa8.98□□□□□ -0.97
TDP1-215ENST00000556498 ZNF710Q8N1W2 664 aa8.98□□□□□ -0.97
TDP1-215ENST00000556498 JPH4Q96JJ6 628 aa8.98□□□□□ -0.97
TDP1-215ENST00000556498 SNPHO15079 494 aa8.97□□□□□ -0.97
TDP1-215ENST00000556498 FCHSD2O94868 740 aa8.97□□□□□ -0.97
TDP1-215ENST00000556498 HMGB1P09429 215 aaKnown RBP8.97□□□□□ -0.97
TDP1-215ENST00000556498 CDK11BP21127 795 aaKnown RBP8.97□□□□□ -0.97
TDP1-215ENST00000556498 EN1Q05925 392 aaPredicted RBP8.97□□□□□ -0.97
TDP1-215ENST00000556498 TYW1BQ6NUM6 668 aa8.97□□□□□ -0.97
TDP1-215ENST00000556498 AK7Q96M32 723 aa8.97□□□□□ -0.97
TDP1-215ENST00000556498 FOSBP53539 338 aa8.96□□□□□ -0.98
TDP1-215ENST00000556498 PTGDRQ13258 359 aa8.96□□□□□ -0.98
TDP1-215ENST00000556498 FBXW7Q969H0 707 aa8.96□□□□□ -0.98
TDP1-215ENST00000556498 GNPATO15228 680 aa8.95□□□□□ -0.98
TDP1-215ENST00000556498 HIC1Q14526 733 aa8.95□□□□□ -0.98
TDP1-215ENST00000556498 MAP3K7O43318 606 aa8.94□□□□□ -0.98
TDP1-215ENST00000556498 HSP90B1P14625 803 aaKnown RBP8.94□□□□□ -0.98
TDP1-215ENST00000556498 BRPF1P55201 1214 aaPredicted RBP8.94□□□□□ -0.98
TDP1-215ENST00000556498 LHX8Q68G74 356 aa8.94□□□□□ -0.98
TDP1-215ENST00000556498 RBM33Q96EV2 1170 aaKnown RBP8.94□□□□□ -0.98
TDP1-215ENST00000556498 NPDC1Q9NQX5 325 aaPredicted RBP8.94□□□□□ -0.98
TDP1-215ENST00000556498 CLSPNQ9HAW4 1339 aa8.94□□□□□ -0.98
TDP1-215ENST00000556498 ZNF454Q8N9F8 522 aa8.93□□□□□ -0.98
TDP1-215ENST00000556498 MINK1Q8N4C8 1332 aaPredicted RBP8.93□□□□□ -0.98
TDP1-215ENST00000556498 TSR1Q2NL82 804 aaKnown RBP8.92□□□□□ -0.98
TDP1-215ENST00000556498 ZDHHC16Q969W1 377 aa8.92□□□□□ -0.98
TDP1-215ENST00000556498 CHMP4AQ9BY43 222 aa8.92□□□□□ -0.98
TDP1-215ENST00000556498 CDHR5Q9HBB8 845 aa8.92□□□□□ -0.98
TDP1-215ENST00000556498 IRF6O14896 467 aa8.91□□□□□ -0.98
TDP1-215ENST00000556498 HOXB1P14653 301 aaPredicted RBP8.91□□□□□ -0.98
TDP1-215ENST00000556498 FECHP22830 423 aa8.91□□□□□ -0.98
TDP1-215ENST00000556498 MAP2K5Q13163 448 aa8.91□□□□□ -0.98
TDP1-215ENST00000556498 LHX6Q9UPM6 363 aa8.91□□□□□ -0.98
TDP1-215ENST00000556498 TRIM66O15016 1216 aa8.9□□□□□ -0.98
TDP1-215ENST00000556498 C6orf132Q5T0Z8 1188 aa8.9□□□□□ -0.98
TDP1-215ENST00000556498 NEUROD2Q15784 382 aa8.89□□□□□ -0.99
TDP1-215ENST00000556498 PSDA5PKW4 1024 aaPredicted RBP8.88□□□□□ -0.99
TDP1-215ENST00000556498 ADAM33Q9BZ11 813 aa8.88□□□□□ -0.99
TDP1-215ENST00000556498 BCCIPQ9P287 314 aaKnown RBP eCLIP8.88□□□□□ -0.99
TDP1-215ENST00000556498 CCDC102AQ96A19 550 aa8.87□□□□□ -0.99
TDP1-215ENST00000556498 TMEM132AQ24JP5 1023 aa8.86□□□□□ -0.99
TDP1-215ENST00000556498 CERKQ8TCT0 537 aa8.86□□□□□ -0.99
TDP1-215ENST00000556498 PDE4DQ08499 809 aa8.85□□□□□ -0.99
TDP1-215ENST00000556498 PPP4R3BQ5MIZ7 849 aa8.85□□□□□ -0.99
TDP1-215ENST00000556498 RSPH4AQ5TD94 716 aa8.84□□□□□ -0.99
TDP1-215ENST00000556498 BCL2L12Q9HB09 334 aa8.84□□□□□ -0.99
TDP1-215ENST00000556498 AMHR2Q16671 573 aa8.82□□□□□ -1
TDP1-215ENST00000556498 GPBP1L1Q9HC44 474 aaPredicted RBP8.82□□□□□ -1
TDP1-215ENST00000556498 RBM27Q9P2N5 1060 aaKnown RBP8.81□□□□□ -1
TDP1-215ENST00000556498 PRSS12P56730 875 aa8.8□□□□□ -1
TDP1-215ENST00000556498 TTC13Q8NBP0 860 aa8.8□□□□□ -1
TDP1-215ENST00000556498 RSPH6AQ9H0K4 717 aa8.8□□□□□ -1
TDP1-215ENST00000556498 KDM4CQ9H3R0 1056 aa8.8□□□□□ -1
TDP1-215ENST00000556498 COL9A1P20849 921 aa8.79□□□□□ -1
TDP1-215ENST00000556498 PTPREP23469 700 aa8.79□□□□□ -1
TDP1-215ENST00000556498 AAMPQ13685 434 aa8.79□□□□□ -1
TDP1-215ENST00000556498 PADI6Q6TGC4 694 aa8.79□□□□□ -1
TDP1-215ENST00000556498 LOC105371045A0A1W2PR82 267 aa8.78□□□□□ -1
TDP1-215ENST00000556498 ST18O60284 1047 aa8.78□□□□□ -1
TDP1-215ENST00000556498 CDCA7LQ96GN5 454 aa8.78□□□□□ -1
TDP1-215ENST00000556498 PPP1R3GB7ZBB8 358 aa8.77□□□□□ -1.01
TDP1-215ENST00000556498 OATP04181 439 aa8.77□□□□□ -1.01
TDP1-215ENST00000556498 TRIM26Q12899 539 aaPredicted RBP8.76□□□□□ -1.01
TDP1-215ENST00000556498 NEUROD1Q13562 356 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 FAM161AQ3B820 660 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 PARP9Q8IXQ6 854 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 PHOX2BQ99453 314 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 ADGRG1Q9Y653 693 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 ERBB3P21860 1342 aa8.76□□□□□ -1.01
TDP1-215ENST00000556498 METTL3Q86U44 580 aaKnown RBP8.75□□□□□ -1.01
TDP1-215ENST00000556498 PPARGC1BQ86YN6 1023 aaKnown RBP8.75□□□□□ -1.01
TDP1-215ENST00000556498 SHROOM4Q9ULL8 1493 aa8.75□□□□□ -1.01
TDP1-215ENST00000556498 TTLL12Q14166 644 aaPredicted RBP8.74□□□□□ -1.01
TDP1-215ENST00000556498 ARID3AQ99856 593 aa8.74□□□□□ -1.01
TDP1-215ENST00000556498 FAM198AQ9UFP1 575 aa8.74□□□□□ -1.01
TDP1-215ENST00000556498 SALL2Q9Y467 1007 aaPredicted RBP8.74□□□□□ -1.01
TDP1-215ENST00000556498 VARS2Q5ST30 1063 aaKnown RBP8.73□□□□□ -1.01
TDP1-215ENST00000556498 IL27Q8NEV9 243 aa8.73□□□□□ -1.01
TDP1-215ENST00000556498 PXYLP1Q8TE99 480 aa8.73□□□□□ -1.01
TDP1-215ENST00000556498 NAP1L5Q96NT1 182 aaPredicted RBP8.73□□□□□ -1.01
TDP1-215ENST00000556498 KCNK17Q96T54 332 aa8.73□□□□□ -1.01
TDP1-215ENST00000556498 TMUB1Q9BVT8 246 aa8.73□□□□□ -1.01
TDP1-215ENST00000556498 REPIN1Q9BWE0 567 aaKnown RBP8.73□□□□□ -1.01
TDP1-215ENST00000556498 TSKSQ9UJT2 592 aa8.73□□□□□ -1.01
TDP1-215ENST00000556498 DHX37Q8IY37 1157 aaKnown RBP8.72□□□□□ -1.01
TDP1-215ENST00000556498 MARVELD3Q96A59 401 aa8.72□□□□□ -1.01
TDP1-215ENST00000556498 FAM163AQ96GL9 167 aaPredicted RBP8.72□□□□□ -1.01
TDP1-215ENST00000556498 CLCN1P35523 988 aa8.71□□□□□ -1.02
TDP1-215ENST00000556498 EMP3P54852 163 aa8.71□□□□□ -1.02
TDP1-215ENST00000556498 FAM117AQ9C073 453 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms