RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 UHRF1BP1Q6BDS2 1440 aa31.83■■■□□ 2.69
CCDC88C-210ENST00000555995 ZMYM3Q14202 1370 aa31.82■■■□□ 2.69
CCDC88C-210ENST00000555995 KIF15Q9NS87 1388 aa31.81■■■□□ 2.68
CCDC88C-210ENST00000555995 ZC3H13Q5T200 1668 aaKnown RBP31.8■■■□□ 2.68
CCDC88C-210ENST00000555995 ERBINQ96RT1 1412 aa31.8■■■□□ 2.68
CCDC88C-210ENST00000555995 ANKRD30AQ9BXX3 1397 aa31.8■■■□□ 2.68
CCDC88C-210ENST00000555995 FAM50AQ14320 339 aaKnown RBP31.78■■■□□ 2.68
CCDC88C-210ENST00000555995 ADGRL2O95490 1459 aa31.75■■■□□ 2.67
CCDC88C-210ENST00000555995 WASHC2CQ9Y4E1 1318 aa31.72■■■□□ 2.67
CCDC88C-210ENST00000555995 PTPRKQ15262 1439 aa31.7■■■□□ 2.67
CCDC88C-210ENST00000555995 NCOA1Q15788 1441 aa31.69■■■□□ 2.66
CCDC88C-210ENST00000555995 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.68■■■□□ 2.66
CCDC88C-210ENST00000555995 PZPP20742 1482 aa31.68■■■□□ 2.66
CCDC88C-210ENST00000555995 RRP7BPQ9NSQ0 103 aa31.68■■■□□ 2.66
CCDC88C-210ENST00000555995 PRDM15P57071 1507 aaPredicted RBP31.68■■■□□ 2.66
CCDC88C-210ENST00000555995 MROH1Q8NDA8 1641 aa31.67■■■□□ 2.66
CCDC88C-210ENST00000555995 MYO3AQ8NEV4 1616 aa31.67■■■□□ 2.66
CCDC88C-210ENST00000555995 ZNF142P52746 1687 aaPredicted RBP31.67■■■□□ 2.66
CCDC88C-210ENST00000555995 HSPA2P54652 639 aa31.66■■■□□ 2.66
CCDC88C-210ENST00000555995 DEPDC5O75140 1603 aa31.66■■■□□ 2.66
CCDC88C-210ENST00000555995 ABCC3O15438 1527 aa31.65■■■□□ 2.66
CCDC88C-210ENST00000555995 CHIC2Q9UKJ5 165 aa31.65■■■□□ 2.66
CCDC88C-210ENST00000555995 CEP152O94986 1710 aa31.61■■■□□ 2.65
CCDC88C-210ENST00000555995 CAMSAP1Q5T5Y3 1602 aa31.59■■■□□ 2.65
CCDC88C-210ENST00000555995 KANK1Q14678 1352 aa31.58■■■□□ 2.65
CCDC88C-210ENST00000555995 PPARGC1BQ86YN6 1023 aaKnown RBP31.58■■■□□ 2.65
CCDC88C-210ENST00000555995 CEP170BQ9Y4F5 1589 aaPredicted RBP31.58■■■□□ 2.65
CCDC88C-210ENST00000555995 ROCK1Q13464 1354 aa31.56■■■□□ 2.64
CCDC88C-210ENST00000555995 RRBP1Q9P2E9 1410 aaKnown RBP31.55■■■□□ 2.64
CCDC88C-210ENST00000555995 TNRQ92752 1358 aa31.55■■■□□ 2.64
CCDC88C-210ENST00000555995 ANKRD50Q9ULJ7 1429 aa31.54■■■□□ 2.64
CCDC88C-210ENST00000555995 A2ML1A8K2U0 1454 aa31.52■■■□□ 2.64
CCDC88C-210ENST00000555995 STRCQ7RTU9 1775 aa31.51■■■□□ 2.64
CCDC88C-210ENST00000555995 DMRT2Q9Y5R5 561 aa31.51■■■□□ 2.63
CCDC88C-210ENST00000555995 SPATA31D1Q6ZQQ2 1576 aa31.5■■■□□ 2.63
CCDC88C-210ENST00000555995 ARHGAP31Q2M1Z3 1444 aa31.49■■■□□ 2.63
CCDC88C-210ENST00000555995 VWDEQ8N2E2 1590 aa31.49■■■□□ 2.63
CCDC88C-210ENST00000555995 NLRP1Q9C000 1473 aa31.49■■■□□ 2.63
CCDC88C-210ENST00000555995 LMTK2Q8IWU2 1503 aa31.49■■■□□ 2.63
CCDC88C-210ENST00000555995 PLA2R1Q13018 1463 aa31.47■■■□□ 2.63
CCDC88C-210ENST00000555995 ERVK-7P63135 1459 aa31.46■■■□□ 2.63
CCDC88C-210ENST00000555995 FBXO31Q5XUX0 539 aaPredicted RBP31.45■■■□□ 2.63
CCDC88C-210ENST00000555995 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.44■■■□□ 2.62
CCDC88C-210ENST00000555995 UNC13BO14795 1591 aa31.42■■■□□ 2.62
CCDC88C-210ENST00000555995 PTPRTO14522 1441 aa31.41■■■□□ 2.62
CCDC88C-210ENST00000555995 ITGAEP38570 1179 aa31.39■■■□□ 2.62
CCDC88C-210ENST00000555995 EFCAB6Q5THR3 1501 aa31.39■■■□□ 2.61
CCDC88C-210ENST00000555995 CFAP65Q6ZU64 1925 aaKnown RBP31.37■■■□□ 2.61
CCDC88C-210ENST00000555995 UGGT1Q9NYU2 1555 aa31.36■■■□□ 2.61
CCDC88C-210ENST00000555995 PKD2Q13563 968 aa31.35■■■□□ 2.61
CCDC88C-210ENST00000555995 TET3O43151 1660 aa31.35■■■□□ 2.61
CCDC88C-210ENST00000555995 GCC2Q8IWJ2 1684 aa31.33■■■□□ 2.61
CCDC88C-210ENST00000555995 RPRD2Q5VT52 1461 aaKnown RBP31.33■■■□□ 2.61
CCDC88C-210ENST00000555995 POLR1AO95602 1720 aaPredicted RBP31.32■■■□□ 2.61
CCDC88C-210ENST00000555995 THEMISQ8N1K5 641 aaPredicted RBP31.3■■■□□ 2.6
CCDC88C-210ENST00000555995 IQGAP3Q86VI3 1631 aa31.29■■■□□ 2.6
CCDC88C-210ENST00000555995 UBR1Q8IWV7 1749 aa31.25■■■□□ 2.59
CCDC88C-210ENST00000555995 KDM5AP29375 1690 aaKnown RBP31.25■■■□□ 2.59
CCDC88C-210ENST00000555995 NCKAP5LQ9HCH0 1330 aa31.22■■■□□ 2.59
CCDC88C-210ENST00000555995 NOS1P29475 1434 aa31.21■■■□□ 2.59
CCDC88C-210ENST00000555995 SYNMO15061 1565 aa31.18■■■□□ 2.58
CCDC88C-210ENST00000555995 HFM1A2PYH4 1435 aa31.18■■■□□ 2.58
CCDC88C-210ENST00000555995 NAIPQ13075 1403 aa31.18■■■□□ 2.58
CCDC88C-210ENST00000555995 PIK3C2BO00750 1634 aa31.18■■■□□ 2.58
CCDC88C-210ENST00000555995 ANKLE2Q86XL3 938 aa31.18■■■□□ 2.58
CCDC88C-210ENST00000555995 NUP155O75694 1391 aa31.17■■■□□ 2.58
CCDC88C-210ENST00000555995 NEURL4Q96JN8 1562 aa31.17■■■□□ 2.58
CCDC88C-210ENST00000555995 E9PCH4 1651 aa31.16■■■□□ 2.58
CCDC88C-210ENST00000555995 SLC52A1Q9NWF4 448 aa31.13■■■□□ 2.57
CCDC88C-210ENST00000555995 MED14O60244 1454 aa31.13■■■□□ 2.57
CCDC88C-210ENST00000555995 SLIT1O75093 1534 aa31.12■■■□□ 2.57
CCDC88C-210ENST00000555995 ADGRB3O60242 1522 aa31.1■■■□□ 2.57
CCDC88C-210ENST00000555995 STAG3Q9UJ98 1225 aa31.1■■■□□ 2.57
CCDC88C-210ENST00000555995 IQGAP1P46940 1657 aa31.09■■■□□ 2.57
CCDC88C-210ENST00000555995 ARHGAP23Q9P227 1491 aa31.09■■■□□ 2.57
CCDC88C-210ENST00000555995 CERKQ8TCT0 537 aa31.09■■■□□ 2.57
CCDC88C-210ENST00000555995 NPHP4O75161 1426 aaPredicted RBP31.07■■■□□ 2.57
CCDC88C-210ENST00000555995 SCAF11Q99590 1463 aaKnown RBP31.07■■■□□ 2.56
CCDC88C-210ENST00000555995 LTBP4Q8N2S1 1624 aa31.06■■■□□ 2.56
CCDC88C-210ENST00000555995 FBXO41Q8TF61 875 aa31.06■■■□□ 2.56
CCDC88C-210ENST00000555995 IDI1Q13907 227 aa31.05■■■□□ 2.56
CCDC88C-210ENST00000555995 IQSEC2Q5JU85 1478 aa31.04■■■□□ 2.56
CCDC88C-210ENST00000555995 ILDR1Q86SU0 546 aaPredicted RBP31.02■■■□□ 2.56
CCDC88C-210ENST00000555995 EID1Q9Y6B2 187 aa31.02■■■□□ 2.56
CCDC88C-210ENST00000555995 TMEM2Q9UHN6 1383 aa31.02■■■□□ 2.56
CCDC88C-210ENST00000555995 SPHKAPQ2M3C7 1700 aa31.01■■■□□ 2.55
CCDC88C-210ENST00000555995 ZNF335Q9H4Z2 1342 aaPredicted RBP30.97■■■□□ 2.55
CCDC88C-210ENST00000555995 ACIN1Q9UKV3 1341 aaKnown RBP30.97■■■□□ 2.55
CCDC88C-210ENST00000555995 TMEM131LA2VDJ0 1609 aa30.95■■■□□ 2.55
CCDC88C-210ENST00000555995 CPS1P31327 1500 aa30.95■■■□□ 2.55
CCDC88C-210ENST00000555995 TXNDC2Q86VQ3 553 aa30.95■■■□□ 2.55
CCDC88C-210ENST00000555995 MYO5BQ9ULV0 1848 aa30.94■■■□□ 2.54
CCDC88C-210ENST00000555995 TRIM52Q96A61 297 aa30.91■■■□□ 2.54
CCDC88C-210ENST00000555995 HDGFP51858 240 aaKnown RBP30.89■■■□□ 2.54
CCDC88C-210ENST00000555995 LTKP29376 864 aa30.88■■■□□ 2.53
CCDC88C-210ENST00000555995 TRPM2O94759 1503 aa30.88■■■□□ 2.53
CCDC88C-210ENST00000555995 ZFYVE9O95405 1425 aa30.84■■■□□ 2.53
CCDC88C-210ENST00000555995 RIMS2Q9UQ26 1411 aa30.82■■■□□ 2.52
CCDC88C-210ENST00000555995 CHGAP10645 457 aaKnown RBP30.82■■■□□ 2.52
CCDC88C-210ENST00000555995 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.82■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms