RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 KIF14Q15058 1648 aa12.65□□□□□ -0.38
SYNE2-213ENST00000554805 IPO9Q96P70 1041 aaKnown RBP12.64□□□□□ -0.39
SYNE2-213ENST00000554805 MBD5Q9P267 1494 aa12.64□□□□□ -0.39
SYNE2-213ENST00000554805 BCORL1Q5H9F3 1711 aa12.63□□□□□ -0.39
SYNE2-213ENST00000554805 ADGRL2O95490 1459 aa12.63□□□□□ -0.39
SYNE2-213ENST00000554805 RNF123Q5XPI4 1314 aa12.63□□□□□ -0.39
SYNE2-213ENST00000554805 RALGAPBQ86X10 1494 aa12.63□□□□□ -0.39
SYNE2-213ENST00000554805 CDCA7LQ96GN5 454 aa12.62□□□□□ -0.39
SYNE2-213ENST00000554805 CCDC144AA2RUR9 1427 aa12.61□□□□□ -0.39
SYNE2-213ENST00000554805 PLIN1O60240 522 aa12.61□□□□□ -0.39
SYNE2-213ENST00000554805 ITSN2Q9NZM3 1697 aa12.61□□□□□ -0.39
SYNE2-213ENST00000554805 MAGI1Q96QZ7 1491 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-213ENST00000554805 UHRF1BP1Q6BDS2 1440 aa12.61□□□□□ -0.39
SYNE2-213ENST00000554805 SYNJ2O15056 1496 aa12.6□□□□□ -0.39
SYNE2-213ENST00000554805 PANK3Q9H999 370 aa12.6□□□□□ -0.39
SYNE2-213ENST00000554805 KDM5CP41229 1560 aa12.59□□□□□ -0.39
SYNE2-213ENST00000554805 ATP10BO94823 1461 aa12.59□□□□□ -0.39
SYNE2-213ENST00000554805 PTPRGP23470 1445 aa12.59□□□□□ -0.39
SYNE2-213ENST00000554805 PDE3BQ13370 1112 aa12.58□□□□□ -0.39
SYNE2-213ENST00000554805 TMF1P82094 1093 aa12.58□□□□□ -0.4
SYNE2-213ENST00000554805 ADGBQ8N7X0 1667 aa12.58□□□□□ -0.4
SYNE2-213ENST00000554805 TCERG1O14776 1098 aaKnown RBP12.57□□□□□ -0.4
SYNE2-213ENST00000554805 LRPPRCP42704 1394 aaKnown RBP12.57□□□□□ -0.4
SYNE2-213ENST00000554805 LAS1LQ9Y4W2 734 aaKnown RBP12.57□□□□□ -0.4
SYNE2-213ENST00000554805 CEP170Q5SW79 1584 aa12.56□□□□□ -0.4
SYNE2-213ENST00000554805 RSPH4AQ5TD94 716 aa12.56□□□□□ -0.4
SYNE2-213ENST00000554805 PDE4AP27815 886 aa12.56□□□□□ -0.4
SYNE2-213ENST00000554805 WDR43Q15061 677 aaKnown RBP eCLIP12.55□□□□□ -0.4
SYNE2-213ENST00000554805 CRBNQ96SW2 442 aa12.54□□□□□ -0.4
SYNE2-213ENST00000554805 ARHGEF12Q9NZN5 1544 aa12.54□□□□□ -0.4
SYNE2-213ENST00000554805 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
SYNE2-213ENST00000554805 ABCC10Q5T3U5 1492 aa12.53□□□□□ -0.4
SYNE2-213ENST00000554805 SHANK2Q9UPX8 1470 aa12.53□□□□□ -0.4
SYNE2-213ENST00000554805 PER1O15534 1290 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-213ENST00000554805 SKAP1Q86WV1 359 aa12.53□□□□□ -0.4
SYNE2-213ENST00000554805 CCDC141Q6ZP82 1450 aa12.52□□□□□ -0.41
SYNE2-213ENST00000554805 PARD3Q8TEW0 1356 aa12.52□□□□□ -0.41
SYNE2-213ENST00000554805 PRAG1Q86YV5 1406 aa12.51□□□□□ -0.41
SYNE2-213ENST00000554805 DISP3Q9P2K9 1392 aa12.51□□□□□ -0.41
SYNE2-213ENST00000554805 DAXXQ9UER7 740 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-213ENST00000554805 SENP3Q9H4L4 574 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-213ENST00000554805 NUP160Q12769 1436 aa12.51□□□□□ -0.41
SYNE2-213ENST00000554805 ADAMTS8Q9UP79 889 aa12.5□□□□□ -0.41
SYNE2-213ENST00000554805 FAM135AQ9P2D6 1515 aa12.5□□□□□ -0.41
SYNE2-213ENST00000554805 CYB5RLQ6IPT4 315 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 TESK2Q96S53 571 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 E9PCH4 1651 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 CROCC2H7BZ55 1655 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 NEFMP07197 916 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 ERBINQ96RT1 1412 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 BACH2Q9BYV9 841 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 ADCY10Q96PN6 1610 aa12.49□□□□□ -0.41
SYNE2-213ENST00000554805 NPM1P06748 294 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNE2-213ENST00000554805 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
SYNE2-213ENST00000554805 MS4A1P11836 297 aa12.47□□□□□ -0.41
SYNE2-213ENST00000554805 WASHC2CQ9Y4E1 1318 aa12.47□□□□□ -0.41
SYNE2-213ENST00000554805 CDC42BPAQ5VT25 1732 aa12.47□□□□□ -0.41
SYNE2-213ENST00000554805 C20orf194Q5TEA3 1177 aa12.47□□□□□ -0.41
SYNE2-213ENST00000554805 ABCA8O94911 1581 aa12.47□□□□□ -0.41
SYNE2-213ENST00000554805 PLEKHH2Q8IVE3 1493 aa12.46□□□□□ -0.41
SYNE2-213ENST00000554805 CCDC146Q8IYE0 955 aa12.46□□□□□ -0.42
SYNE2-213ENST00000554805 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.45□□□□□ -0.42
SYNE2-213ENST00000554805 A2MP01023 1474 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 ZMYM4Q5VZL5 1548 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 PPP2R1AP30153 589 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 CDCA8Q53HL2 280 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 EFCAB2Q5VUJ9 269 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 KDM5DQ9BY66 1539 aa12.45□□□□□ -0.42
SYNE2-213ENST00000554805 RGS3P49796 1198 aa12.44□□□□□ -0.42
SYNE2-213ENST00000554805 GOLGA2Q08379 1002 aa12.44□□□□□ -0.42
SYNE2-213ENST00000554805 SYCP2Q9BX26 1530 aa12.43□□□□□ -0.42
SYNE2-213ENST00000554805 DDRGK1Q96HY6 314 aa12.43□□□□□ -0.42
SYNE2-213ENST00000554805 PLA2R1Q13018 1463 aa12.43□□□□□ -0.42
SYNE2-213ENST00000554805 COL17A1Q9UMD9 1497 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-213ENST00000554805 PPM1GO15355 546 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-213ENST00000554805 SLC4A3P48751 1232 aa12.42□□□□□ -0.42
SYNE2-213ENST00000554805 GPRASP1Q5JY77 1395 aa12.42□□□□□ -0.42
SYNE2-213ENST00000554805 ARHGEF5Q12774 1597 aa12.41□□□□□ -0.42
SYNE2-213ENST00000554805 ERCC6L2Q5T890 1561 aa12.41□□□□□ -0.42
SYNE2-213ENST00000554805 SAMD9LQ8IVG5 1584 aa12.41□□□□□ -0.42
SYNE2-213ENST00000554805 SPAG9O60271 1321 aaKnown RBP12.4□□□□□ -0.42
SYNE2-213ENST00000554805 CANXP27824 592 aaKnown RBP12.4□□□□□ -0.42
SYNE2-213ENST00000554805 CHGAP10645 457 aaKnown RBP12.39□□□□□ -0.43
SYNE2-213ENST00000554805 AFAP1Q8N556 730 aa12.39□□□□□ -0.43
SYNE2-213ENST00000554805 APAF1O14727 1248 aa12.39□□□□□ -0.43
SYNE2-213ENST00000554805 VIRMAQ69YN4 1812 aaKnown RBP12.39□□□□□ -0.43
SYNE2-213ENST00000554805 CENPQQ7L2Z9 268 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-213ENST00000554805 DUSP27Q5VZP5 1158 aa12.38□□□□□ -0.43
SYNE2-213ENST00000554805 BLMP54132 1417 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-213ENST00000554805 PLEKHH1Q9ULM0 1364 aa12.37□□□□□ -0.43
SYNE2-213ENST00000554805 NEUROD2Q15784 382 aa12.37□□□□□ -0.43
SYNE2-213ENST00000554805 AMER1Q5JTC6 1135 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-213ENST00000554805 TRPM1Q7Z4N2 1603 aa12.37□□□□□ -0.43
SYNE2-213ENST00000554805 TNNT2P45379 298 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-213ENST00000554805 RTN4Q9NQC3 1192 aaKnown RBP12.36□□□□□ -0.43
SYNE2-213ENST00000554805 LAMC1P11047 1609 aa12.36□□□□□ -0.43
SYNE2-213ENST00000554805 CHD1O14646 1710 aa12.36□□□□□ -0.43
SYNE2-213ENST00000554805 KIF3BO15066 747 aa12.36□□□□□ -0.43
SYNE2-213ENST00000554805 FAM161AQ3B820 660 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms