RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 FBXW7Q969H0 707 aa11.79□□□□□ -0.52
SCFD1-211ENST00000554437 ZDHHC16Q969W1 377 aa11.79□□□□□ -0.52
SCFD1-211ENST00000554437 NUTM2FA1L443 756 aa11.78□□□□□ -0.52
SCFD1-211ENST00000554437 PRIM1P49642 420 aaKnown RBP11.78□□□□□ -0.52
SCFD1-211ENST00000554437 TPRNQ4KMQ1 711 aa11.78□□□□□ -0.52
SCFD1-211ENST00000554437 MAP3K7O43318 606 aa11.77□□□□□ -0.53
SCFD1-211ENST00000554437 EN1Q05925 392 aaPredicted RBP11.77□□□□□ -0.53
SCFD1-211ENST00000554437 GPIHBP1Q8IV16 184 aa11.76□□□□□ -0.53
SCFD1-211ENST00000554437 ADAM33Q9BZ11 813 aa11.74□□□□□ -0.53
SCFD1-211ENST00000554437 ZNF687Q8N1G0 1237 aa11.72□□□□□ -0.53
SCFD1-211ENST00000554437 PRKCSHP14314 528 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-211ENST00000554437 TSR1Q2NL82 804 aaKnown RBP11.71□□□□□ -0.53
SCFD1-211ENST00000554437 ZC3H15Q8WU90 426 aaKnown RBP11.71□□□□□ -0.53
SCFD1-211ENST00000554437 C6orf132Q5T0Z8 1188 aa11.7□□□□□ -0.54
SCFD1-211ENST00000554437 BCL2L12Q9HB09 334 aa11.69□□□□□ -0.54
SCFD1-211ENST00000554437 CDHR5Q9HBB8 845 aa11.69□□□□□ -0.54
SCFD1-211ENST00000554437 FCHSD2O94868 740 aa11.67□□□□□ -0.54
SCFD1-211ENST00000554437 PTPREP23469 700 aa11.66□□□□□ -0.54
SCFD1-211ENST00000554437 PTGDRQ13258 359 aa11.65□□□□□ -0.54
SCFD1-211ENST00000554437 GPR37O15354 613 aa11.64□□□□□ -0.55
SCFD1-211ENST00000554437 KCNH8Q96L42 1107 aa11.64□□□□□ -0.55
SCFD1-211ENST00000554437 KCNK17Q96T54 332 aa11.64□□□□□ -0.55
SCFD1-211ENST00000554437 NPDC1Q9NQX5 325 aaPredicted RBP11.64□□□□□ -0.55
SCFD1-211ENST00000554437 HIC1Q14526 733 aa11.63□□□□□ -0.55
SCFD1-211ENST00000554437 ZMYND10O75800 440 aa11.62□□□□□ -0.55
SCFD1-211ENST00000554437 ANKRD13DQ6ZTN6 518 aa11.62□□□□□ -0.55
SCFD1-211ENST00000554437 CERKQ8TCT0 537 aa11.62□□□□□ -0.55
SCFD1-211ENST00000554437 GNPATO15228 680 aa11.61□□□□□ -0.55
SCFD1-211ENST00000554437 PPP1R3GB7ZBB8 358 aa11.6□□□□□ -0.55
SCFD1-211ENST00000554437 ARHGAP33O14559 1287 aa11.6□□□□□ -0.55
SCFD1-211ENST00000554437 COL9A1P20849 921 aa11.6□□□□□ -0.55
SCFD1-211ENST00000554437 BARGINQ6ZT62 677 aa11.6□□□□□ -0.55
SCFD1-211ENST00000554437 KRI1Q8N9T8 703 aaKnown RBP11.6□□□□□ -0.55
SCFD1-211ENST00000554437 AXIN2Q9Y2T1 843 aa11.6□□□□□ -0.55
SCFD1-211ENST00000554437 PSEN2P49810 448 aa11.59□□□□□ -0.55
SCFD1-211ENST00000554437 PBX2P40425 430 aa11.58□□□□□ -0.56
SCFD1-211ENST00000554437 POTEEQ6S8J3 1075 aa11.58□□□□□ -0.56
SCFD1-211ENST00000554437 FECHP22830 423 aa11.57□□□□□ -0.56
SCFD1-211ENST00000554437 PRSS12P56730 875 aa11.55□□□□□ -0.56
SCFD1-211ENST00000554437 CDCA7LQ96GN5 454 aa11.55□□□□□ -0.56
SCFD1-211ENST00000554437 PADI6Q6TGC4 694 aa11.54□□□□□ -0.56
SCFD1-211ENST00000554437 SLC24A3Q9HC58 644 aa11.54□□□□□ -0.56
SCFD1-211ENST00000554437 DMRTA1Q5VZB9 504 aa11.53□□□□□ -0.56
SCFD1-211ENST00000554437 MAP2K5Q13163 448 aa11.52□□□□□ -0.57
SCFD1-211ENST00000554437 PLA2G2EQ9NZK7 142 aa11.52□□□□□ -0.57
SCFD1-211ENST00000554437 RBM27Q9P2N5 1060 aaKnown RBP11.52□□□□□ -0.57
SCFD1-211ENST00000554437 MINK1Q8N4C8 1332 aaPredicted RBP11.52□□□□□ -0.57
SCFD1-211ENST00000554437 PROX2Q3B8N5 592 aa11.51□□□□□ -0.57
SCFD1-211ENST00000554437 ZBED2Q9BTP6 218 aa11.51□□□□□ -0.57
SCFD1-211ENST00000554437 TRIM6-TRIM34B2RNG4 842 aa11.49□□□□□ -0.57
SCFD1-211ENST00000554437 IRF6O14896 467 aa11.49□□□□□ -0.57
SCFD1-211ENST00000554437 LSM11P83369 360 aaKnown RBP eCLIP11.49□□□□□ -0.573e-6■□□□□ 10
SCFD1-211ENST00000554437 TSKSQ9UJT2 592 aa11.49□□□□□ -0.57
SCFD1-211ENST00000554437 TTC13Q8NBP0 860 aa11.48□□□□□ -0.57
SCFD1-211ENST00000554437 AK7Q96M32 723 aa11.48□□□□□ -0.57
SCFD1-211ENST00000554437 PACS2Q86VP3 889 aa11.47□□□□□ -0.57
SCFD1-211ENST00000554437 CCDC102AQ96A19 550 aa11.47□□□□□ -0.57
SCFD1-211ENST00000554437 SLC4A5Q9BY07 1137 aa11.47□□□□□ -0.57
SCFD1-211ENST00000554437 FAM198AQ9UFP1 575 aa11.47□□□□□ -0.57
SCFD1-211ENST00000554437 FAM161AQ3B820 660 aa11.46□□□□□ -0.57
SCFD1-211ENST00000554437 ONECUT3O60422 494 aaPredicted RBP11.45□□□□□ -0.58
SCFD1-211ENST00000554437 KIAA1468Q9P260 1216 aa11.45□□□□□ -0.58
SCFD1-211ENST00000554437 VPS9D1Q9Y2B5 631 aa11.45□□□□□ -0.58
SCFD1-211ENST00000554437 ADGRG1Q9Y653 693 aa11.44□□□□□ -0.58
SCFD1-211ENST00000554437 NBPF26B4DH59 902 aa11.43□□□□□ -0.58
SCFD1-211ENST00000554437 OATP04181 439 aa11.43□□□□□ -0.58
SCFD1-211ENST00000554437 PNMA3Q9UL41 463 aa11.43□□□□□ -0.58
SCFD1-211ENST00000554437 TK2O00142 265 aa11.42□□□□□ -0.58
SCFD1-211ENST00000554437 NUDT18Q6ZVK8 323 aa11.42□□□□□ -0.58
SCFD1-211ENST00000554437 RABGEF1Q9UJ41 708 aa11.42□□□□□ -0.58
SCFD1-211ENST00000554437 ADGRD1Q6QNK2 874 aa11.41□□□□□ -0.58
SCFD1-211ENST00000554437 RBM46Q8TBY0 533 aaKnown RBP11.41□□□□□ -0.58
SCFD1-211ENST00000554437 TATDN2Q93075 761 aa11.41□□□□□ -0.58
SCFD1-211ENST00000554437 C3orf80F5H4A9 247 aa11.4□□□□□ -0.58
SCFD1-211ENST00000554437 TRIM66O15016 1216 aa11.4□□□□□ -0.58
SCFD1-211ENST00000554437 SMAPO00193 183 aa11.39□□□□□ -0.59
SCFD1-211ENST00000554437 METTL3Q86U44 580 aaKnown RBP11.39□□□□□ -0.59
SCFD1-211ENST00000554437 PXYLP1Q8TE99 480 aa11.38□□□□□ -0.59
SCFD1-211ENST00000554437 HCSTQ9UBK5 93 aa11.38□□□□□ -0.59
SCFD1-211ENST00000554437 EYA1Q99502 592 aa11.37□□□□□ -0.59
SCFD1-211ENST00000554437 NBPF3Q9H094 633 aa11.37□□□□□ -0.59
SCFD1-211ENST00000554437 SEPT9Q9UHD8 586 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-211ENST00000554437 STAC3Q96MF2 364 aa11.36□□□□□ -0.59
SCFD1-211ENST00000554437 PDE4DQ08499 809 aa11.35□□□□□ -0.59
SCFD1-211ENST00000554437 PHOX2BQ99453 314 aa11.35□□□□□ -0.59
SCFD1-211ENST00000554437 BHMG1C9JSJ3 638 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-211ENST00000554437 NLRP7Q8WX94 980 aa11.34□□□□□ -0.59
SCFD1-211ENST00000554437 RCCD1A6NED2 376 aa11.33□□□□□ -0.6
SCFD1-211ENST00000554437 AMHR2Q16671 573 aa11.33□□□□□ -0.6
SCFD1-211ENST00000554437 MRPL50Q8N5N7 158 aaKnown RBP11.33□□□□□ -0.6
SCFD1-211ENST00000554437 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.32□□□□□ -0.6
SCFD1-211ENST00000554437 HRO43593 1189 aa11.32□□□□□ -0.6
SCFD1-211ENST00000554437 DNAJB2P25686 324 aa11.32□□□□□ -0.6
SCFD1-211ENST00000554437 MDM2Q00987 491 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-211ENST00000554437 TTLL12Q14166 644 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-211ENST00000554437 NEUROD2Q15784 382 aa11.31□□□□□ -0.6
SCFD1-211ENST00000554437 FAM98CQ17RN3 349 aaKnown RBP11.31□□□□□ -0.6
SCFD1-211ENST00000554437 LAPTM4BQ86VI4 370 aa11.31□□□□□ -0.6
SCFD1-211ENST00000554437 BRPF1P55201 1214 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-211ENST00000554437 GOLGA8CPA6NN73 597 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms