RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 FBXO31Q5XUX0 539 aaPredicted RBP22.49■■□□□ 1.19
SHMT2-208ENST00000553868 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.49■■□□□ 1.19
SHMT2-208ENST00000553868 ATP7AQ04656 1500 aa22.47■■□□□ 1.19
SHMT2-208ENST00000553868 LRRC7Q96NW7 1537 aa22.47■■□□□ 1.19
SHMT2-208ENST00000553868 APLP2Q06481 763 aa22.46■■□□□ 1.19
SHMT2-208ENST00000553868 ANKLE2Q86XL3 938 aa22.46■■□□□ 1.19
SHMT2-208ENST00000553868 NPHP4O75161 1426 aaPredicted RBP22.44■■□□□ 1.18
SHMT2-208ENST00000553868 TNRQ92752 1358 aa22.44■■□□□ 1.18
SHMT2-208ENST00000553868 RNF17Q9BXT8 1623 aaKnown RBP22.44■■□□□ 1.18
SHMT2-208ENST00000553868 INO80Q9ULG1 1556 aaPredicted RBP22.42■■□□□ 1.18
SHMT2-208ENST00000553868 FYCO1Q9BQS8 1478 aa22.4■■□□□ 1.18
SHMT2-208ENST00000553868 MED14O60244 1454 aa22.39■■□□□ 1.17
SHMT2-208ENST00000553868 CASKIN1Q8WXD9 1431 aa22.39■■□□□ 1.17
SHMT2-208ENST00000553868 IQGAP1P46940 1657 aa22.38■■□□□ 1.17
SHMT2-208ENST00000553868 DEPDC5O75140 1603 aa22.35■■□□□ 1.17
SHMT2-208ENST00000553868 THEMISQ8N1K5 641 aaPredicted RBP22.35■■□□□ 1.17
SHMT2-208ENST00000553868 SYNMO15061 1565 aa22.34■■□□□ 1.17
SHMT2-208ENST00000553868 GPATCH8Q9UKJ3 1502 aaKnown RBP22.33■■□□□ 1.17
SHMT2-208ENST00000553868 UGGT1Q9NYU2 1555 aa22.33■■□□□ 1.16
SHMT2-208ENST00000553868 MAP3K1Q13233 1512 aa22.32■■□□□ 1.16
SHMT2-208ENST00000553868 ADGBQ8N7X0 1667 aa22.32■■□□□ 1.16
SHMT2-208ENST00000553868 PZPP20742 1482 aa22.31■■□□□ 1.16
SHMT2-208ENST00000553868 FAM135AQ9P2D6 1515 aa22.3■■□□□ 1.16
SHMT2-208ENST00000553868 XIRP1Q702N8 1843 aaKnown RBP22.28■■□□□ 1.16
SHMT2-208ENST00000553868 MIA2Q96PC5 1412 aa22.28■■□□□ 1.16
SHMT2-208ENST00000553868 KIAA1107Q9UPP5 1409 aa22.28■■□□□ 1.16
SHMT2-208ENST00000553868 CCDC18Q5T9S5 1454 aa22.27■■□□□ 1.16
SHMT2-208ENST00000553868 SRCAPQ6ZRS2 3230 aa22.27■■□□□ 1.15
SHMT2-208ENST00000553868 UPF1Q92900 1129 aaKnown RBP eCLIP22.26■■□□□ 1.15
SHMT2-208ENST00000553868 CFDP1Q9UEE9 299 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-208ENST00000553868 NLRP1Q9C000 1473 aa22.25■■□□□ 1.15
SHMT2-208ENST00000553868 KIF3BO15066 747 aa22.24■■□□□ 1.15
SHMT2-208ENST00000553868 KDM5DQ9BY66 1539 aa22.24■■□□□ 1.15
SHMT2-208ENST00000553868 TIAM1Q13009 1591 aa22.24■■□□□ 1.15
SHMT2-208ENST00000553868 ZC3H13Q5T200 1668 aaKnown RBP22.23■■□□□ 1.15
SHMT2-208ENST00000553868 PLEKHH2Q8IVE3 1493 aa22.22■■□□□ 1.15
SHMT2-208ENST00000553868 ZNF644Q9H582 1327 aaPredicted RBP22.22■■□□□ 1.15
SHMT2-208ENST00000553868 WASHC2CQ9Y4E1 1318 aa22.22■■□□□ 1.15
SHMT2-208ENST00000553868 FAM135BQ49AJ0 1406 aa22.22■■□□□ 1.15
SHMT2-208ENST00000553868 DHX29Q7Z478 1369 aaKnown RBP22.21■■□□□ 1.15
SHMT2-208ENST00000553868 PPARGC1BQ86YN6 1023 aaKnown RBP22.19■■□□□ 1.14
SHMT2-208ENST00000553868 ROBO1Q9Y6N7 1651 aa22.17■■□□□ 1.14
SHMT2-208ENST00000553868 TRIM52Q96A61 297 aa22.15■■□□□ 1.14
SHMT2-208ENST00000553868 CCNB3Q8WWL7 1395 aa22.14■■□□□ 1.14
SHMT2-208ENST00000553868 TRIM26Q12899 539 aaPredicted RBP22.14■■□□□ 1.13
SHMT2-208ENST00000553868 LRRC9Q6ZRR7 1453 aa22.14■■□□□ 1.13
SHMT2-208ENST00000553868 MBD5Q9P267 1494 aa22.14■■□□□ 1.13
SHMT2-208ENST00000553868 KANK4Q5T7N3 995 aaPredicted RBP22.12■■□□□ 1.13
SHMT2-208ENST00000553868 RBM33Q96EV2 1170 aaKnown RBP22.12■■□□□ 1.13
SHMT2-208ENST00000553868 LTKP29376 864 aa22.11■■□□□ 1.13
SHMT2-208ENST00000553868 SCAF11Q99590 1463 aaKnown RBP22.1■■□□□ 1.13
SHMT2-208ENST00000553868 RTEL1-TNFRSF6BF6WH68 1400 aa22.1■■□□□ 1.13
SHMT2-208ENST00000553868 MTUS2Q5JR59 1369 aa22.1■■□□□ 1.13
SHMT2-208ENST00000553868 TMEM94Q12767 1356 aa22.09■■□□□ 1.13
SHMT2-208ENST00000553868 UBR1Q8IWV7 1749 aa22.07■■□□□ 1.12
SHMT2-208ENST00000553868 EHBP1L1Q8N3D4 1523 aa22.06■■□□□ 1.12
SHMT2-208ENST00000553868 TXNDC2Q86VQ3 553 aa22.06■■□□□ 1.12
SHMT2-208ENST00000553868 NCOA2Q15596 1464 aa22.04■■□□□ 1.12
SHMT2-208ENST00000553868 PHLPP1O60346 1717 aa22.04■■□□□ 1.12
SHMT2-208ENST00000553868 CFAP65Q6ZU64 1925 aaKnown RBP22.04■■□□□ 1.12
SHMT2-208ENST00000553868 ERVK-7P63135 1459 aa22.03■■□□□ 1.12
SHMT2-208ENST00000553868 LRP6O75581 1613 aa22.03■■□□□ 1.12
SHMT2-208ENST00000553868 JCADQ9P266 1359 aa22.02■■□□□ 1.12
SHMT2-208ENST00000553868 ABCC3O15438 1527 aa22.01■■□□□ 1.11
SHMT2-208ENST00000553868 ARHGAP23Q9P227 1491 aa22■■□□□ 1.11
SHMT2-208ENST00000553868 MEX3CQ5U5Q3 659 aaKnown RBP21.98■■□□□ 1.11
SHMT2-208ENST00000553868 SLIT1O75093 1534 aa21.97■■□□□ 1.11
SHMT2-208ENST00000553868 ZNF772Q68DY9 489 aaPredicted RBP21.97■■□□□ 1.11
SHMT2-208ENST00000553868 PROSER2Q86WR7 435 aaPredicted RBP21.97■■□□□ 1.11
SHMT2-208ENST00000553868 CCDC141Q6ZP82 1450 aa21.96■■□□□ 1.11
SHMT2-208ENST00000553868 PCGF6Q9BYE7 350 aa21.95■■□□□ 1.1
SHMT2-208ENST00000553868 RXRBP28702 533 aa21.94■■□□□ 1.1
SHMT2-208ENST00000553868 COL16A1Q07092 1604 aaPredicted RBP21.94■■□□□ 1.1
SHMT2-208ENST00000553868 KCNA6P17658 529 aa21.93■■□□□ 1.1
SHMT2-208ENST00000553868 SLAIN2Q9P270 581 aa21.93■■□□□ 1.1
SHMT2-208ENST00000553868 EID1Q9Y6B2 187 aa21.93■■□□□ 1.1
SHMT2-208ENST00000553868 SLC26A8Q96RN1 970 aa21.92■■□□□ 1.1
SHMT2-208ENST00000553868 CEP152O94986 1710 aa21.91■■□□□ 1.1
SHMT2-208ENST00000553868 PRDM15P57071 1507 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-208ENST00000553868 SPATA31A6Q5VVP1 1343 aa21.88■■□□□ 1.09
SHMT2-208ENST00000553868 CAMSAP2Q08AD1 1489 aa21.88■■□□□ 1.09
SHMT2-208ENST00000553868 RRBP1Q9P2E9 1410 aaKnown RBP21.88■■□□□ 1.09
SHMT2-208ENST00000553868 MSH6P52701 1360 aa21.87■■□□□ 1.09
SHMT2-208ENST00000553868 MROH1Q8NDA8 1641 aa21.87■■□□□ 1.09
SHMT2-208ENST00000553868 TMEM2Q9UHN6 1383 aa21.86■■□□□ 1.09
SHMT2-208ENST00000553868 PIK3C2BO00750 1634 aa21.85■■□□□ 1.09
SHMT2-208ENST00000553868 MYOM3Q5VTT5 1437 aa21.84■■□□□ 1.09
SHMT2-208ENST00000553868 CDK12Q9NYV4 1490 aaPredicted RBP21.83■■□□□ 1.09
SHMT2-208ENST00000553868 TET3O43151 1660 aa21.82■■□□□ 1.08
SHMT2-208ENST00000553868 NUTM2BA6NNL0 878 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-208ENST00000553868 NUTM2EB1AL46 878 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-208ENST00000553868 NUTM2AQ8IVF1 878 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-208ENST00000553868 FGD6Q6ZV73 1430 aa21.81■■□□□ 1.08
SHMT2-208ENST00000553868 NWD1Q149M9 1564 aa21.8■■□□□ 1.08
SHMT2-208ENST00000553868 NKTRP30414 1462 aaKnown RBP21.8■■□□□ 1.08
SHMT2-208ENST00000553868 RGS12O14924 1447 aa21.8■■□□□ 1.08
SHMT2-208ENST00000553868 SHPRHQ149N8 1683 aa21.79■■□□□ 1.08
SHMT2-208ENST00000553868 TSPY4P0CV99 314 aa21.79■■□□□ 1.08
SHMT2-208ENST00000553868 TSPY10P0CW01 314 aa21.79■■□□□ 1.08
SHMT2-208ENST00000553868 RSPH4AQ5TD94 716 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms